A comparison of tests of homogeneity for sparse contingency tables

Five tests of homogeneity for a 2x(k+l) contingency table are compared using Monte Carlo techniques. For these studiesit is assumed that k becomes large in such a way that thecontingency table is sparse for 2xk of the cells, but the sample size in two of the cells remains large. The test statistics studied are: the chi-square approximation to the Pearson test statistic, the chi-square approximation to the likelihood ratio statistic, the normal approximation to Zelterman's (1984)the normal approximation to Pearson's chi-square, and the normal approximation to the likelihood ratio statistic. For the range of parameters studied the chi-square approximation to Pearson's statistic performs consistently well with regard to its size and power.     

Goodness of fit tests for the multiple logistic regression model

Several test statistics are proposed for the purpose of assessing the goodness of fit of the multiple logistic regression model. The test statistics are obtained by applying a chi-square test for a contingency table in which the expected frequencies are determined using two different grouping strategies and two different sets of distributional assumptions. The null distributions of these statistics are examined by applying the theory for chi-square tests of Moore Spruill (1975) and through computer simulations. All statistics are shown to have a chi-square distribution or a distribution which can be well approximated by a chi-square. The degrees of freedom are shown to depend on the particular statistic and the distributional assumptions.

The power of each of the proposed statistics is examined for the normal, linear, and exponential alternative models using computer simulations.     

Goodness-of-fit Tests for GEE with Correlated Binary Data

The marginal logistic regression, in combination with GEE, is an increasingly important method in dealing with correlated binary data. As for independent binary data, when the number of possible combinations of the covariate values in a logistic regression model is much larger than the sample size, such as when the logistic model contains at least one continuous covariate, many existing chi-square goodness-of-fit tests either are not applicable or have some serious drawbacks. In this paper two residual based normal goodness-of-fit test statistics are proposed: the Pearson chi-square and an unweighted sum of residual squares. Easy-to-calculate approximations to the mean and variance of either statistic are also given. Their performance, in terms of both size and power, was satisfactory in our simulation studies. For illustration we apply them to a real data set.     

Testing the homogeneity of several two‐parameter populations

The authors extend Fisher's method of combining two independent test statistics to test homogeneity of several two‐parameter populations. They explore two procedures combining asymptotically independent test statistics: the first pools two likelihood ratio statistics and the other, score test statistics. They then give specific results to test homogeneity of several normal, negative binomial or beta‐binomial populations. Their simulations provide evidence that in this context, Fisher's method performs generally well, even when the statistics to be combined are only asymptotically independent. They are led to recommend Fisher's test based on score statistics, since the latter have simple forms, are easy to calculate, and have uniformly good level properties.     

Optimal detection of a jump in the intensity of a Poisson process or in a density with likelihood ratio statistics

We consider the problem of detecting a ‘bump’ in the intensity of a Poisson process or in a density. We analyze two types of likelihood ratio‐based statistics, which allow for exact finite sample inference and asymptotically optimal detection: The maximum of the penalized square root of log likelihood ratios (‘penalized scan’) evaluated over a certain sparse set of intervals and a certain average of log likelihood ratios (‘condensed average likelihood ratio’). We show that penalizing the square root of the log likelihood ratio — rather than the log likelihood ratio itself — leads to a simple penalty term that yields optimal power. The thus derived penalty may prove useful for other problems that involve a Brownian bridge in the limit. The second key tool is an approximating set of intervals that is rich enough to allow for optimal detection, but which is also sparse enough to allow justifying the validity of the penalization scheme simply via the union bound. This results in a considerable simplification in the theoretical treatment compared with the usual approach for this type of penalization technique, which requires establishing an exponential inequality for the variation of the test statistic. Another advantage of using the sparse approximating set is that it allows fast computation in nearly linear time. We present a simulation study that illustrates the superior performance of the penalized scan and of the condensed average likelihood ratio compared with the standard scan statistic.     

Powers of Discrete Goodness-of-Fit Test Statistics for a Uniform Null Against a Selection of Alternative Distributions

The comparative powers of six discrete goodness-of-fit test statistics for a uniform null distribution against a variety of fully specified alternative distributions are discussed. The results suggest that the test statistics based on the empirical distribution function for ordinal data (Kolmogorov–Smirnov, Cramér–von Mises, and Anderson–Darling) are generally more powerful for trend alternative distributions. The test statistics for nominal (Pearson's chi-square and the nominal Kolmogorov–Smirnov) and circular data (Watson's test statistic) are shown to be generally more powerful for the investigated triangular (∨), flat (or platykurtic type), sharp (or leptokurtic type), and bimodal alternative distributions.     

Negative exponential disparity based family of goodness-of-fit tests for multinomial models

This paper investigates a new family of goodness-of-fit tests based on the negative exponential disparities. This family includes the popular Pearson's chi-square as a member and is a subclass of the general class of disparity tests (Basu and Sarkar, 1994) which also contains the family of power divergence statistics. Pitman efficiency and finite sample power comparisons between different members of this new family are made. Three asymptotic approximations of the exact null distributions of the negative exponential disparity famiiy of tests are discussed. Some numerical results on the small sample perfomance of this family of tests are presented for the symmetric null hypothesis. It is shown that the negative exponential disparity famiiy, Like the power divergence family, produces a new goodness-of-fit test statistic that can be a very attractive alternative to the Pearson's chi-square. Some numerical results suggest that, application of this test statistic, as an alternative to Pearson's chi-square, could be preferable to the I ^2/3 statistic of Cressie and Read (1984) under the use of chi-square critical values.     

A test for bivariate two sample location problem

A consistent test for difference in locations between two bivariate populations is proposed, The test is similar as the Mann-Whitney test and depends on the exceedances of slopes of the two samples where slope for each sample observation is computed by taking the ratios of the observed values. In terms of the slopes, it reduces to a univariate problem, The power of the test has been compared with those of various existing tests by simulation. The proposed test statistic is compared with Mardia's(1967) test statistics, Peters-Randies(1991) test statistic, Wilcoxon's rank sum test. statistic and Hotelling' T² test statistic using Monte Carlo technique. It performs better than other statistics compared for small differences in locations between two populations when underlying population is population 7(light tailed population) and sample size 15 and 18 respectively. When underlying population is population 6(heavy tailed population) and sample sizes are 15 and 18 it performas better than other statistic compared except Wilcoxon's rank sum test statistics for small differences in location between two populations. It performs better than Mardia's(1967) test statistic for large differences in location between two population when underlying population is bivariate normal mixture with probability p=0.5, population 6, Pearson type II population and Pearson type VII population for sample size 15 and 18 .Under bivariate normal population it performs as good as Mardia' (1967) test statistic for small differences in locations between two populations and sample sizes 15 and 18. For sample sizes 25 and 28 respectively it performs better than Mardia's (1967) test statistic when underlying population is population 6, Pearson type II population and Pearson type VII population     

Multiple Marginal Independence Testing for Pick Any/C Variables

Many survey questions allow respondents to pick any number out of c possible categorical responses or “items”. These kinds of survey questions often use the terminology “choose all that apply” or “pick any”. Often of interest is determining if the marginal response distributions of each item differ among r different groups of respondents. Agresti and Liu (1998, 1999) call this a test for multiple marginal independence (MMI). If respondents are allowed to pick only 1 out of c responses, the hypothesis test may be performed using the Pearson chi-square test of independence. However, since respondents may pick more or less than 1 response, the test's assumptions that responses are made independently of each other is violated. Recently, a few MMI testing methods have been proposed. Loughin and Scherer (1998) propose using a bootstrap method based on a modified version of the Pearson chi-square test statistic. Agresti and Liu (1998, 1999) propose using marginal logit models, quasisymmetric loglinear models, and a few methods based on Pearson chi-square test statistics. Decady and Thomas (1999) propose using a Rao-Scott adjusted chi-squared test statistic. There has not been a full investigation of these MMI testing methods. The purpose here is to evaluate the proposed methods and propose a few new methods. Recommendations are given to guide the practitioner in choosing which MMI testing methods to use.     

A new method for the comparison of survival distributions

The assessment of overall homogeneity of time‐to‐event curves is a key element in survival analysis in biomedical research. The currently commonly used testing methods, e.g. log‐rank test, Wilcoxon test, and Kolmogorov–Smirnov test, may have a significant loss of statistical testing power under certain circumstances. In this paper we propose a new testing method that is robust for the comparison of the overall homogeneity of survival curves based on the absolute difference of the area under the survival curves using normal approximation by Greenwood's formula. Monte Carlo simulations are conducted to investigate the performance of the new testing method compared against the log‐rank, Wilcoxon, and Kolmogorov–Smirnov tests under a variety of circumstances. The proposed new method has robust performance with greater power to detect the overall differences than the log‐rank, Wilcoxon, and Kolmogorov–Smirnov tests in many scenarios in the simulations. Furthermore, the applicability of the new testing approach is illustrated in a real data example from a kidney dialysis trial. Copyright © 2009 John Wiley & Sons, Ltd.     

A bivariate signed rank test for two sample location problem

An affine-invariant signed rank test for the difference in location between two symmetric populations is proposed. The proposed test statistic is compared with Hotelling's T2 test statistic, Mardia's(1967)test statistic, Peters-Randles(1991) test statistic and Wilcoxon's rank sum test statistic using a Monte Carlo Study. It performs better than Mardia's test statistic under almost all populations considered. Under the bivariate normal distribution, it performs better than other test statistics compared for small differences in location between two populations except Hotelling's T2. It performs better than all statistics, including Hotelling's T , for sample size 15 when samples are drawn from Pearson type.     

Generalized likelihood-ratio test of the number of components in finite mixture models

The number of components is an important feature in finite mixture models. Because of the irregularity of the parameter space, the log-likelihood-ratio statistic does not have a chi-square limit distribution. It is very difficult to find a test with a specified significance level, and this is especially true for testing k — 1 versus k components. Most of the existing work has concentrated on finding a comparable approximation to the limit distribution of the log-likelihood-ratio statistic. In this paper, we use a statistic similar to the usual log likelihood ratio, but its null distribution is asymptotically normal. A simulation study indicates that the method has good power at detecting extra components. We also discuss how to improve the power of the test, and some simulations are performed.     

Iso‐chi‐squared testing of 2 × k: ordered tables

The Pearson chi‐squared statistic for testing the equality of two multinomial populations when the categories are nominal is much less appropriate for ordinal categories. Test statistics typically used in this context are based on scorings of the ordinal levels, but the results of these tests are highly dependent on the choice of scores. The authors propose a test which naturally modifies the Pearson chi‐squared statistic to incorporate the ordinal information. The proposed test statistic does not depend on the scores and under the null hypothesis of equality of populations, it is asymptotically equivalent to the likelihood ratio test against the alternative of two‐sided likelihood ratio ordering.     

Improved testing for the binomial distribution using chi-squared components with data-dependent cells

A power study suggests that a good test of fit analysis for the binomial distribution is provided by a data-dependent Chernoff–Lehmann X ² test with class expectations greater than unity, and its components. These data-dependent statistics involve arithmetically simple parameter estimation, convenient approximate distributions and provide a comprehensive assessment of how well the data agree with a binomial distribution. We suggest that a well-performed single test of fit statistic is the Anderson–Darling statistic.     

Bootstrap Bartlett correction in inflated beta regression

The inflated beta regression model aims to enable the modeling of responses in the intervals (0, 1], [0, 1), or [0, 1]. In this model, hypothesis testing is often performed based on the likelihood ratio statistic. The critical values are obtained from asymptotic approximations, which may lead to distortions of size in small samples. In this sense, this article proposes the bootstrap Bartlett correction to the statistic of likelihood ratio in the inflated beta regression model. The proposed adjustment only requires a simple Monte Carlo simulation. Through extensive Monte Carlo simulations the finite sample performance (size and power) of the proposed corrected test is compared to the usual likelihood ratio test and the Skovgaard adjustment already proposed in the literature. The numerical results evidence that inference based on the proposed correction is much more reliable than that based on the usual likelihood ratio statistics and the Skovgaard adjustment. At the end of the work, an application to real data is also presented.     

Empirical phi-divergence test statistics for testing simple and composite null hypotheses

The main purpose of this paper is to introduce first a new family of empirical test statistics for testing a simple null hypothesis when the vector of parameters of interest is defined through a specific set of unbiased estimating functions. This family of test statistics is based on a distance between two probability vectors, with the first probability vector obtained by maximizing the empirical likelihood (EL) on the vector of parameters, and the second vector defined from the fixed vector of parameters under the simple null hypothesis. The distance considered for this purpose is the phi-divergence measure. The asymptotic distribution is then derived for this family of test statistics. The proposed methodology is illustrated through the well-known data of Newcomb's measurements on the passage time for light. A simulation study is carried out to compare its performance with that of the EL ratio test when confidence intervals are constructed based on the respective statistics for small sample sizes. The results suggest that the ‘empirical modified likelihood ratio test statistic’ provides a competitive alternative to the EL ratio test statistic, and is also more robust than the EL ratio test statistic in the presence of contamination in the data. Finally, we propose empirical phi-divergence test statistics for testing a composite null hypothesis and present some asymptotic as well as simulation results for evaluating the performance of these test procedures.     

Testing for linearity in generalized linear models using kernel smoothing

A test statistic proposed by Li (1999) for testing the adequacy of heteroscedastic nonlinear regression models using nonparametric kernel smoothers is applied to testing for linearity in generalized linear models. Simulation results for models with centered gamma and inverse Gaussian errors are presented to illustrate the performance of the resulting test compared with log-likelihood ratio tests for specific parametric alternatives. The test is applied to a data set of coronary heart disease status (Hosmer and Lemeshow, (1990).     

Overdispersed poisson regression models for studies of air pollution and human health

This paper presents results from a simulation study motivated by a recent study of the relationships between ambient levels of air pollution and human health in the community of Prince George, British Columbia. The simulation study was designed to evaluate the performance of methods based on overdispersed Poisson regression models for the analysis of series of count data. Aspects addressed include estimation of the dispersion parameter, estimation of regression coefficients and their standard errors, and the performance of model selection tests. The effects of varying amounts of overdispersion and differing underlying variance structure on this performance were of particular interest. This study is related to work reported by Breslow (1990) although the context is quite different. Preliminary work led to the conclusion that estimation of the dispersion parameter should be based on Pearson's chi-square statistic rather than the Poisson deviance. Regression coefficients are well estimated, even in the présence of substantial overdispersion and when the model for the variance function is incorrectly specified. Despite potential greater variability, the empirical estimator of the covariance matrix is preferred because the model-based estimator is unreliable in general. When the model for the variance function is incorrect, model-based test statistics may perform poorly, in sharp contrast to empirical test statistics, which performed very well in this study.     

Testing for normality in linear regression models

The importance of the normal distribution for fitting continuous data is well known. However, in many practical situations data distribution departs from normality. For example, the sample skewness and the sample kurtosis are far away from 0 and 3, respectively, which are nice properties of normal distributions. So, it is important to have formal tests of normality against any alternative. D'Agostino et al. [A suggestion for using powerful and informative tests of normality, Am. Statist. 44 (1990), pp. 316–321] review four procedures Z ²(g ₁), Z ²(g ₂), D and K ² for testing departure from normality. The first two of these procedures are tests of normality against departure due to skewness and kurtosis, respectively. The other two tests are omnibus tests. An alternative to the normal distribution is a class of skew-normal distributions (see [A. Azzalini, A class of distributions which includes the normal ones, Scand. J. Statist. 12 (1985), pp. 171–178]). In this paper, we obtain a score test (W) and a likelihood ratio test (LR) of goodness of fit of the normal regression model against the skew-normal family of regression models. It turns out that the score test is based on the sample skewness and is of very simple form. The performance of these six procedures, in terms of size and power, are compared using simulations. The level properties of the three statistics LR, W and Z ²(g ₁) are similar and close to the nominal level for moderate to large sample sizes. Also, their power properties are similar for small departure from normality due to skewness (γ₁≤0.4). Of these, the score test statistic has a very simple form and computationally much simpler than the other two statistics. The LR statistic, in general, has highest power, although it is computationally much complex as it requires estimates of the parameters under the normal model as well as those under the skew-normal model. So, the score test may be used to test for normality against small departure from normality due to skewness. Otherwise, the likelihood ratio statistic LR should be used as it detects general departure from normality (due to both skewness and kurtosis) with, in general, largest power.     

Jackknife-After-Bootstrap as Logistic Regression Diagnostic Tool

In this study, we propose using Jackknife-after-Bootstrap (JaB) method to detect influential observations in binary logistic regression model. Performance of the proposed method has been compared with the traditional method for standardized Pearson residuals, Cook's distance, change in the Pearson chi-square and change in the deviance statistics by both real world examples and simulation studies. The results reveal that under the various scenarios considered in this article, JaB performs better than the traditional method and is more robust to masking effect especially for Cook's distance.