An algorithm for constructing optimal resolvable incomplete block designs

This paper describes an efficient algorithm for the construction of optimal or near-optimal resolvable incomplete block designs (IBDs) for any number of treatments v < 100. The performance of this algorithm is evaluated against known lattice designs and the 414 or-designs of Patterson & Williams [36]. For the designs under study, it appears that our algorithm is about equally effective as the simulated annealing algorithm of Venables & Eccleston [42]. An example of the use of our algorithm to construct the row (or column) components of resolvable row-column designs is given.     

D-Optimal Designs for Covariate Parameters in Block Design Set Up

The problem considered is that of finding D-optimal design for the estimation of covariate parameters and the treatment and block contrasts in a block design set up in the presence of non stochastic controllable covariates, when N = 2(mod 4), N being the total number of observations. It is clear that when N ≠ 0 (mod 4), it is not possible to find designs attaining minimum variance for the estimated covariate parameters. Conditions for D-optimum designs for the estimation of covariate parameters were established when each of the covariates belongs to the interval [?1, 1]. Some constructions of D-optimal design have been provided for symmetric balanced incomplete block design (SBIBD) with parameters b = v, r = k = v ? 1, λ =v ? 2 when k = 2 (mod 4) and b is an odd integer.     

Balanced treatment incomplete block designs through integer programming

An algorithm is presented to construct balanced treatment incomplete block (BTIB) designs using a linear integer programming approach. Construction of BTIB designs using the proposed approach is illustrated with an example. A list of efficient BTIB designs for 2 ? v ? 12, v + 1 ? b ? 50, 2 ? k ? min(10, v), r ? 10, r₀ ? 20 is provided. The proposed algorithm is implemented as part of an R package.     

Algorithmic construction of optimal block designs for two-colour cDNA microarray experiments using the linear mixed effects model

ABSTRACT

In this study, methods for efficient construction of A-, MV-, D- and E-optimal or near-optimal block designs for two-colour cDNA microarray experiments with array as the block effect are considered. Two algorithms, namely the array exchange and treatment exchange algorithms together with the complete enumeration technique are introduced. For large numbers of arrays or treatments or both, the complete enumeration method is highly computer intensive. The treatment exchange algorithm computes the optimal or near-optimal designs faster than the array exchange algorithm. The two methods however produce optimal or near-optimal designs with the same efficiency under the four optimality criteria.     

Block designs for incomplete factorial treatment structures with two factors

Abstract

In this paper, the problem of obtaining efficient block designs for incomplete factorial treatment structure with two factors excluding one treatment combination for estimation of dual versus single treatment contrasts is considered. The designs have been obtained using the A-optimal completely randomized designs and modified strongest treatment interchange algorithm. A catalog of efficient block designs has been prepared for m₁?=?3, 4 and m₂?=?2, b?≤?10 and k?≤?9 and for m₁?=?3,4 and m₂?=?3, 4, b?≤?10 and k?≤?10.     

Construction of (M,S)-optimal design for block size 3

(M,S)-optimal designs are constructed for block size three when the number of treatments is of the form 6t + 3.     

Distributional Studies and the Computer: An Analysis of Durbin's Rank Test

A study of the distribution of a statistic involves two major steps: (a) working out its asymptotic, large n, distribution, and (b) making the connection between the asymptotic results and the distribution of the statistic for the sample sizes used in practice. This crucial second step is not included in many studies. In this article, the second step is applied to Durbin's (1951) well-known rank test of treatment effects in balanced incomplete block designs (BIB's). We found that asymptotic, χ², distributions do not provide adequate approximations in most BIB's. Consequently, we feel that several of Durbin's recommendations should be altered.     

E- and R-optimality of block designs for treatment-control comparisons

Abstract

We study optimal block designs for comparing a set of test treatments with a control treatment. We provide the class of all E-optimal approximate block designs, which is characterized by simple linear constraints. Based on this characterization, we obtain a class of E-optimal exact designs for unequal block sizes. In the studied model, we provide a statistical interpretation for wide classes of E-optimal designs. Moreover, we show that all approximate A-optimal designs and a large class of A-optimal exact designs for treatment-control comparisons are also R-optimal. This reinforces the observation that A-optimal designs perform well even for rectangular confidence regions.     

Application of minque procedure to block designs

Method of minimum norm quadratic unbiased estimation (MINQUE) is applied to incomplete block designs. Simple formulae are derived for a class of designs which includes the balanced designs.     

(M,S)-optimal row-column designs

Row-column designs may be considered to have two blocking schemes, namely the treatments by rows and treatments by columns component block designs. The (M,S)-optimality criterion is applied to row-column designs, and che connection between the (M,S)-optimal design and its component block designs is demonstrated.     

On the construction of group divisible incomplete block designs

In this paper a method of constructing group-divisible incomplete block designs has been suggested. A series of balanced incomplete block designs has also been obtained.     

PARTIALLY EQUINEIGHBOURED DESIGNS

This paper presents further results on a class of designs called equineighboured designs, ED. These designs are intended for field and related experiments, especially whenever there is evidence that observations in the same block are correlated. An ED has the property that every unordered pair of treatments occurs as nearest neighbours equally frequently at each level. Ipinyomi (1986) has defined and shown that ED are balanced designs when neighbouring observations are correlated. He has also presented ED as a continuation of the development of optimal block designs. An ED would often require many times the number of experimental materials needed for the construction of an ordinary balanced incomplete block, BIB, design for the same number of treatments and block sizes. Thus for a relatively large number of treatments and block sizes the required minimum number of blocks may be excessively large for practical use of ED. In this paper we shall define and examine partially equineighboured designs with n concurrences, PED (n), as alternatives where ED are practically unachievable. Particular attention will be given to designs with smaller numbers of blocks and for which only as little balance as possible may be lost.     

A note on the nonexistence of the constant block-sum balanced incomplete block designs

Abstract

Due to important practical applications and considerations in biomedical clinical trials, fixed block-sum designs are of interest. We show that in general, the constant block-sum balanced incomplete block designs do not exist.     

Tables of Cyclic Incomplete Block Designs: r=k

Initial blocks and efficiencies are given for cyclic incomplete block designs in the range t= 10(1)60 and r=k= 3(1)10. The designs have been selected by search procedures using optimality criteria which maximize the efficiency factor.     

On optimality properties of simple block designs in the approximate design theory

Optimality properties of approximate block designs are studied under variations of (1) the class of competing designs, (2) the optimality criterion, (3) the parametric function of interest, and (4) the statistical model. The designs which are optimal turn out to be the product of their treatment and block marginals, and uniform designs when the support is specified in advance. Optimality here means uniform, universal, and simultaneous j_p-optimality. The classical balanced incomplete block designs are embedded into this approach, and shown to be simultaneously j_p-optimal for a maximal system of identifiable parameters. A geometric account of universal optimality is given which applies beyond the context of block designs.     

Optimal designs for non-competitive enzyme inhibition kinetic models

In this paper, we present a new method for determining optimal designs for enzyme inhibition kinetic models, which are used to model the influence of the concentration of a substrate and an inhibition on the velocity of a reaction. The approach uses a nonlinear transformation of the vector of predictors such that the model in the new coordinates is given by an incomplete response surface model. Although there exist no explicit solutions of the optimal design problem for incomplete response surface models so far, the corresponding design problem in the new coordinates is substantially more transparent, such that explicit or numerical solutions can be determined more easily. The designs for the original problem can finally be found by an inverse transformation of the optimal designs determined for the response surface model. We illustrate the method determining explicit solutions for the D-optimal design and for the optimal design problem for estimating the individual coefficients in a non-competitive enzyme inhibition kinetic model.     

Partially efficiency-balanced designs-II

efficiency balanced (£R) and partially efficiency balanced (PEB) designs were studied hy Calinski (1971) and Puri and Higam (1971, 1977a). In tais paper we have studied the dual desinas of two classes of PEB designs. It is shown that the dual of any symmetrical PCS design with HN'=N'H is again a PEB design. Also the dual of a PEB(S) with μ₁ = 0 μ₂ = 0and is shown to the again a PEB(S). The relations between PEB designs and linked and partially linked blocks have heen established. As a conseguence, the analysis of linked Mock and partially linkei block designs can he sinrlififid. Sore useful classes of supplencntcd block designs having simple analysis have also been discussed.     

Efficient Block Designs for Dependent Observations—A Computer-Aided Search

In this article, the exchange and interchange algorithm of Zergaw (1989 Zergaw , G. ( 1989 ). A sequential method of constructing optimal block designs . Austral. J. Statist. 31 : 333 – 342 .[Crossref] , [Google Scholar]) and Martin and Eccleston (1992 Martin , R. J. , Eccleston , J. A. ( 1992 ). Recursive formulae for constructing block designs with dependent errors . Biometrika 79 : 426 – 430 .[Crossref], [Web of Science ®] , [Google Scholar]) have been modified and used for searching efficient block designs for making all possible pairwise treatment comparisons when observations are dependent. The lower bounds to the A- and D-efficiencies of the designs in a given class of the designs have been obtained for correlated observation structure and the procedure of computing lower bounds to A- and D-efficiencies has been incorporated in the algorithm. The algorithm has been translated into a computer program using Microsoft Visual C++. Using this program, a search for efficient designs for making all possible pairwise treatment comparisons has been made for v ≤ 10, b ≤ 33, k ≤ 10 such that bk ≤ 100 and v > k. The block designs considered are usual block designs (rectangular block designs) and circular block designs. Nearest neighbor (NN), autoregressive of order 1 (AR(1)) correlation structures are studied. The ranges of correlation coefficients for different correlation structures investigated are |ρ|≤0.50 for NN correlation structure in rectangular blocks, |ρ|≤0.45 for NN correlation structure in circular blocks, and |ρ|≤0.95 for AR(1) correlation structure. For these ranges, the matrix of correlation coefficients among observations within a block is positive definite. Robustness aspects of designs that are efficient for a given value of correlation have been investigated against other values of correlation coefficients. Robustness aspects of designs that are efficient for independent observations have also been studied for experimental situations with dependent observations.