Nonparametric estimation of discrete hazard functions

A smoothing procedure for discrete time failure data is proposed which allows for the inclusion of covariates. This purely nonparametric method is based on discrete or continuous kernel smoothing techniques that gives a compromise between the data and smoothness. The method may be used as an exploratory tool to uncover the underlying structure or as an alternative to parametric methods when prediction is the primary objective. Confidence intervals are considered and alternative techniques of cross validation based choices of smoothing parameters are investigated.     

Generalized additive models for longitudinal data

We introduce a class of models for longitudinal data by extending the generalized estimating equations approach of Liang and Zeger (1986) to incorporate the flexibility of nonparametric smoothing. The algorithm provides a unified estimation procedure for marginal distributions from the exponential family. We propose pointwise standard-error bands and approximate likelihood-ratio and score tests for inference. The algorithm is formally derived by using the penalized quasilikelihood framework. Convergence of the estimating equations and consistency of the resulting solutions are discussed. We illustrate the algorithm with data on the population dynamics of Colorado potato beetles on potato plants.     

A semiparametric stochastic mixed effects model for bivariate cyclic longitudinal data

We propose a flexible semiparametric stochastic mixed effects model for bivariate cyclic longitudinal data. The model can handle either single cycle or, more generally, multiple consecutive cycle data. The approach models the mean of responses by parametric fixed effects and a smooth nonparametric function for the underlying time effects, and the relationship across the bivariate responses by a bivariate Gaussian random field and a joint distribution of random effects. The proposed model not only can model complicated individual profiles, but also allows for more flexible within-subject and between-response correlations. The fixed effects regression coefficients and the nonparametric time functions are estimated using maximum penalized likelihood, where the resulting estimator for the nonparametric time function is a cubic smoothing spline. The smoothing parameters and variance components are estimated simultaneously using restricted maximum likelihood. Simulation results show that the parameter estimates are close to the true values. The fit of the proposed model on a real bivariate longitudinal dataset of pre-menopausal women also performs well, both for a single cycle analysis and for a multiple consecutive cycle analysis. The Canadian Journal of Statistics 48: 471–498; 2020 © 2020 Statistical Society of Canada     

Fitting semiparametric accelerated failure time models for nested case–control data

A nested case–control (NCC) study is an efficient cohort-sampling design in which a subset of controls are sampled from the risk set at each event time. Since covariate measurements are taken only for the sampled subjects, time and efforts of conducting a full scale cohort study can be saved. In this paper, we consider fitting a semiparametric accelerated failure time model to failure time data from a NCC study. We propose to employ an efficient induced smoothing procedure for rank-based estimating method for regression parameters estimation. For variance estimation, we propose to use an efficient resampling method that utilizes the robust sandwich form. We extend our proposed methods to a generalized NCC study that allows a sampling of cases. Finite sample properties of the proposed estimators are investigated via an extensive stimulation study. An application to a tumor study illustrates the utility of the proposed method in routine data analysis.     

Bayesian factor models for multivariate categorical data obtained from questionnaires

Factor analysis is a flexible technique for assessment of multivariate dependence and codependence. Besides being an exploratory tool used to reduce the dimensionality of multivariate data, it allows estimation of common factors that often have an interesting theoretical interpretation in real problems. However, standard factor analysis is only applicable when the variables are scaled, which is often inappropriate, for example, in data obtained from questionnaires in the field of psychology, where the variables are often categorical. In this framework, we propose a factor model for the analysis of multivariate ordered and non-ordered polychotomous data. The inference procedure is done under the Bayesian approach via Markov chain Monte Carlo methods. Two Monte Carlo simulation studies are presented to investigate the performance of this approach in terms of estimation bias, precision and assessment of the number of factors. We also illustrate the proposed method to analyze participants'' responses to the Motivational State Questionnaire dataset, developed to study emotions in laboratory and field settings.     

Fast covariance estimation for sparse functional data

Smoothing of noisy sample covariances is an important component in functional data analysis. We propose a novel covariance smoothing method based on penalized splines and associated software. The proposed method is a bivariate spline smoother that is designed for covariance smoothing and can be used for sparse functional or longitudinal data. We propose a fast algorithm for covariance smoothing using leave-one-subject-out cross-validation. Our simulations show that the proposed method compares favorably against several commonly used methods. The method is applied to a study of child growth led by one of coauthors and to a public dataset of longitudinal CD4 counts.     

Interval-valued data regression using partial linear model

Semi-parametric modelling of interval-valued data is of great practical importance, as exampled by applications in economic and financial data analysis. We propose a flexible semi-parametric modelling of interval-valued data by integrating the partial linear regression model based on the Center & Range method, and investigate its estimation procedure. Furthermore, we introduce a test statistic that allows one to decide between a parametric linear model and a semi-parametric model, and approximate its null asymptotic distribution based on wild Bootstrap method to obtain the critical values. Extensive simulation studies are carried out to evaluate the performance of the proposed methodology and the new test. Moreover, several empirical data sets are analysed to document its practical applications.     

Local Box–Cox transformation on time-varying parametric models for smoothing estimation of conditional CDF with longitudinal data

Nonparametric estimation and inferences of conditional distribution functions with longitudinal data have important applications in biomedical studies, such as epidemiological studies and longitudinal clinical trials. Estimation approaches without any structural assumptions may lead to inadequate and numerically unstable estimators in practice. We propose in this paper a nonparametric approach based on time-varying parametric models for estimating the conditional distribution functions with a longitudinal sample. Our model assumes that the conditional distribution of the outcome variable at each given time point can be approximated by a parametric model after local Box–Cox transformation. Our estimation is based on a two-step smoothing method, in which we first obtain the raw estimators of the conditional distribution functions at a set of disjoint time points, and then compute the final estimators at any time by smoothing the raw estimators. Applications of our two-step estimation method have been demonstrated through a large epidemiological study of childhood growth and blood pressure. Finite sample properties of our procedures are investigated through a simulation study. Application and simulation results show that smoothing estimation from time-variant parametric models outperforms the existing kernel smoothing estimator by producing narrower pointwise bootstrap confidence band and smaller root mean squared error.     

Smoothing combined estimating equations in quantile regression for longitudinal data

Quantile regression has become a powerful complement to the usual mean regression. A simple approach to use quantile regression in marginal analysis of longitudinal data is to assume working independence. However, this may incur potential efficiency loss. On the other hand, correctly specifying a working correlation in quantile regression can be difficult. We propose a new quantile regression model by combining multiple sets of unbiased estimating equations. This approach can account for correlations between the repeated measurements and produce more efficient estimates. Because the objective function is discrete and non-convex, we propose induced smoothing for fast and accurate computation of the parameter estimates, as well as their asymptotic covariance, using Newton-Raphson iteration. We further develop a robust quantile rank score test for hypothesis testing. We show that the resulting estimate is asymptotically normal and more efficient than the simple estimate using working independence. Extensive simulations and a real data analysis show the usefulness of the method.     

Testing of mean interval for interval-valued data

Abstract

A new parametric hypothesis test of mean interval for interval-valued data set, which can deal with massive information contained in nowadays massive data “Big data” sets, is proposed. An approach using an orthogonal transformation is introduced to obtain an equivalent hypothesis test of mean interval in terms of the mid-point and mid-range of the interval-valued variable. The new test is very efficient in small interval-valued sample scenarios. Some simulation studies are conducted for the investigation of the sample size and the power of test. The performance of the proposed test is illustrated with two real-life examples.     

Two-step estimation of functional linear models with applications to longitudinal data

Functional linear models are useful in longitudinal data analysis. They include many classical and recently proposed statistical models for longitudinal data and other functional data. Recently, smoothing spline and kernel methods have been proposed for estimating their coefficient functions nonparametrically but these methods are either intensive in computation or inefficient in performance. To overcome these drawbacks, in this paper, a simple and powerful two-step alternative is proposed. In particular, the implementation of the proposed approach via local polynomial smoothing is discussed. Methods for estimating standard deviations of estimated coefficient functions are also proposed. Some asymptotic results for the local polynomial estimators are established. Two longitudinal data sets, one of which involves time-dependent covariates, are used to demonstrate the approach proposed. Simulation studies show that our two-step approach improves the kernel method proposed by Hoover and co-workers in several aspects such as accuracy, computational time and visual appeal of the estimators.     

Functional and dynamic magnetic resonance imaging using vector adaptive weights smoothing

We consider the problem of statistical inference for functional and dynamic magnetic resonance imaging (MRI). A new approach is proposed which extends the adaptive weights smoothing procedure of Polzehl and Spokoiny that was originally designed for image denoising. We demonstrate how the adaptive weights smoothing method can be applied to time series of images, which typically occur in functional and dynamic MRI. It is shown how signal detection in functional MRI and the analysis of dynamic MRI can benefit from spatially adaptive smoothing. The performance of the procedure is illustrated by using real and simulated data.     

Analysis of growth curve data by using cubic smoothing splines

Longitudinal data frequently arises in various fields of applied sciences where individuals are measured according to some ordered variable, e.g. time. A common approach used to model such data is based on the mixed models for repeated measures. This model provides an eminently flexible approach to modeling of a wide range of mean and covariance structures. However, such models are forced into a rigidly defined class of mathematical formulas which may not be well supported by the data within the whole sequence of observations. A possible non-parametric alternative is a cubic smoothing spline, which is highly flexible and has useful smoothing properties. It can be shown that under normality assumption, the solution of the penalized log-likelihood equation is the cubic smoothing spline, and this solution can be further expressed as a solution of the linear mixed model. It is shown here how cubic smoothing splines can be easily used in the analysis of complete and balanced data. Analysis can be greatly simplified by using the unweighted estimator studied in the paper. It is shown that if the covariance structure of random errors belong to certain class of matrices, the unweighted estimator is the solution to the penalized log-likelihood function. This result is new in smoothing spline context and it is not only confined to growth curve settings. The connection to mixed models is used in developing a rough testing of group profiles. Numerical examples are presented to illustrate the techniques proposed.     

A simple,automatic and adaptive bivariate density estimator based on conditional densities

The standard approach to non-parametric bivariate density estimation is to use a kernel density estimator. Practical performance of this estimator is hindered by the fact that the estimator is not adaptive (in the sense that the level of smoothing is not sensitive to local properties of the density). In this paper a simple, automatic and adaptive bivariate density estimator is proposed based on the estimation of marginal and conditional densities. Asymptotic properties of the estimator are examined, and guidance to practical application of the method is given. Application to two examples illustrates the usefulness of the estimator as an exploratory tool, particularly in situations where the local behaviour of the density varies widely. The proposed estimator is also appropriate for use as a pilot estimate for an adaptive kernel estimate, since it is relatively inexpensive to calculate.     

Wavelet shrinkage for unequally spaced data

Wavelet shrinkage (WaveShrink) is a relatively new technique for nonparametric function estimation that has been shown to have asymptotic near-optimality properties over a wide class of functions. As originally formulated by Donoho and Johnstone, WaveShrink assumes equally spaced data. Because so many statistical applications (e.g., scatterplot smoothing) naturally involve unequally spaced data, we investigate in this paper how WaveShrink can be adapted to handle such data. Focusing on the Haar wavelet, we propose four approaches that extend the Haar wavelet transform to the unequally spaced case. Each approach is formulated in terms of continuous wavelet basis functions applied to a piecewise constant interpolation of the observed data, and each approach leads to wavelet coefficients that can be computed via a matrix transform of the original data. For each approach, we propose a practical way of adapting WaveShrink. We compare the four approaches in a Monte Carlo study and find them to be quite comparable in performance. The computationally simplest approach (isometric wavelets) has an appealing justification in terms of a weighted mean square error criterion and readily generalizes to wavelets of higher order than the Haar.     

Adaptive modelling of dose–response relationships using smoothing splines

We consider the use of smoothing splines for the adaptive modelling of dose–response relationships. A smoothing spline is a nonparametric estimator of a function that is a compromise between the fit to the data and the degree of smoothness and thus provides a flexible way of modelling dose–response data. In conjunction with decision rules for which doses to continue with after an interim analysis, it can be used to give an adaptive way of modelling the relationship between dose and response. We fit smoothing splines using the generalized cross‐validation criterion for deciding on the degree of smoothness and we use estimated bootstrap percentiles of the predicted values for each dose to decide upon which doses to continue with after an interim analysis. We compare this approach with a corresponding adaptive analysis of variance approach based upon new simulations of the scenarios previously used by the PhRMA Working Group on Adaptive Dose‐Ranging Studies. The results obtained for the adaptive modelling of dose–response data using smoothing splines are mostly comparable with those previously obtained by the PhRMA Working Group for the Bayesian Normal Dynamic Linear model (GADA) procedure. These methods may be useful for carrying out adaptations, detecting dose–response relationships and identifying clinically relevant doses. Copyright © 2009 John Wiley & Sons, Ltd.     

A modified approximate method for analysis of degradation data

Estimation of the lifetime distribution of industrial components and systems yields very important information for manufacturers and consumers. However, obtaining reliability data is time consuming and costly. In this context, degradation tests are a useful alternative approach to lifetime and accelerated life tests in reliability studies. The approximate method is one of the most used techniques for degradation data analysis. It is very simple to understand and easy to implement numerically in any statistical software package. This paper uses time series techniques in order to propose a modified approximate method (MAM). The MAM improves the standard one in two aspects: (1) it uses previous observations in the degradation path as a Markov process for future prediction and (2) it is not necessary to specify a parametric form for the degradation path. Characteristics of interest such as mean or median time to failure and percentiles, among others, are obtained by using the modified method. A simulation study is performed in order to show the improved properties of the modified method over the standard one. Both methods are also used to estimate the failure time distribution of the fatigue-crack-growth data set.     

Simple methods for ecological inference in 2×2 tables

This paper considers inference about the individual level relationship between two dichotomous variables based on aggregated data. It is known that such analyses suffer from 'ecological bias', caused by the lack of homogeneity of this relationship across the groups over which the aggregation occurs. Two new methods for overcoming this bias, one based on local smoothing and the other a simple semiparametric approach, are developed and evaluated. The local smoothing approach performs best when it is used with a covariate which accounts for some of the variation in the relationships across groups. The semiparametric approach performed well in our evaluation even without such auxiliary information