Spatial dependence estimation using FFT of biased covariances

One of the main problems in geostatistics is fitting a valid variogram or covariogram model in order to describe the underlying dependence structure in the data. The dependence between observations can be also modeled in the spectral domain, but the traditional methods based on the periodogram as an estimator of the spectral density may present some problems for the spatial case. In this work, we propose an estimation method for the covariogram parameters based on the fast Fourier transform (FFT) of biased covariances. The performance of this estimator for finite samples is compared through a simulation study with other classical methods stated in spatial domain, such as weighted least squares and maximum likelihood, as well as with other spectral estimators. Additionally, an example of application to real data is given.     

Constructing and fitting models for cokriging and multivariable spatial prediction

We consider best linear unbiased prediction for multivariable data. Minimizing mean-squared-prediction errors leads to prediction equations involving either covariances or variograms. We discuss problems with multivariate extensions that include the construction of valid models and the estimation of their parameters. In this paper, we develop new methods to construct valid crossvariograms, fit them to data, and then use them for multivariable spatial prediction, including cokriging. Crossvariograms are constructed by explicitly modeling spatial data as moving averages over white noise random processes. Parameters of the moving average functions may be inferred from the variogram, and with few additional parameters, crossvariogram models are constructed. Weighted least squares is then used to fit the crossvariogram model to the empirical crossvariogram for the data. We demonstrate the method for simulated data, and show a considerable advantage of cokriging over ordinary kriging.     

An evaluation of a non-parametric method of estimating semi-variograms of isotropic spatial processes

Semi-variograms are useful for describing the correlation strucure of spatial random variables. Valid semi-variograms must be conditionally negative definite. To ensure this restriction when estimating these functions, a valid parametric model is typically fitted to a sample semi-variogram. Recently, a method of fitting valid semi-variograms without having to choose a parametric family has been described in the literature. The method is based on the spectral representation of positive definite functions. In this paper, the method is evaluated using simulated data. The fits obtained using the non-parametric method are compared with fits obtained by fitting four parametric models (exponential, Gaussian, rational quadratic and power) to simulated data using non-linear least squares. The comparisons are based on the integrated squared errors of the resulting fits. The non-parametric estimator always resulted in fits that were as good as those obtained using the parametric models. The non-parametric method is faster, easier to use and more objective than the parametric methods. Some examples are presented.     

Fitting linear regression models to censored data by least squares and maximum likelihood methods

Several approaches have been suggested for fitting linear regression models to censored data. These include Cox's propor­tional hazard models based on quasi-likelihoods. Methods of fitting based on least squares and maximum likelihoods have also been proposed. The methods proposed so far all require special purpose optimization routines. We describe an approach here which requires only a modified standard least squares routine.

We present methods for fitting a linear regression model to censored data by least squares and method of maximum likelihood. In the least squares method, the censored values are replaced by their expectations, and the residual sum of squares is minimized. Several variants are suggested in the ways in which the expect­ation is calculated. A parametric (assuming a normal error model) and two non-parametric approaches are described. We also present a method for solving the maximum likelihood equations in the estimation of the regression parameters in the censored regression situation. It is shown that the solutions can be obtained by a recursive algorithm which needs only a least squares routine for optimization. The suggested procesures gain considerably in computational officiency. The Stanford Heart Transplant data is used to illustrate the various methods.     

Flexible spatio-temporal stationary variogram models

In this paper we propose a generalization of the Shapiro and Botha (1991) approach that allows one to obtain flexible spatio-temporal stationary variogram models. It is shown that if the weighted least squares criterion is chosen, the fitting of such models to pilot estimations of the variogram can be easily carried out by solving a quadratic programming problem. The work also includes an application to real data and a simulation study in order to illustrate the performance of the proposed space-time dependency modeling.     

Closure of the class of binary generalized linear models in some non-standard settings

This paper considers fitting generalized linear models to binary data in nonstandard settings such as case–control samples, studies with misclassified responses and misspecified models. We develop simple methods for fitting models to case–control data and show that a closure property holds for generalized linear models in the nonstandard settings, i.e. if the responses follow a generalized linear model in the population of interest, then so will the observed response in the non-standard setting, but with a modified link function. These results imply that we can analyse data and study problems in the non-standard settings by using classical generalized linear model methods such as the iteratively reweighted least squares algorithm. Example data illustrate the results.     

Ridge estimation in generalized linear models and proportional hazards regressions

Conventionally, a ridge parameter is estimated as a function of regression parameters based on ordinary least squares. In this article, we proposed an iterative procedure instead of the one-step or conventional ridge method. Additionally, we construct an indicator that measures the potential degree of improvement in mean squared error when ridge estimates are employed. Simulations show that our methods are appropriate for a wide class of non linear models including generalized linear models and proportional hazards (PHs) regressions. The method is applied to a PH regression with highly collinear covariates in a cancer recurrence study.     

Fitting Time Series Models by Minimizing Multistep-ahead Errors: a Frequency Domain Approach

This paper brings together two topics in the estimation of time series forecasting models: the use of the multistep-ahead error sum of squares as a criterion to be minimized and frequency domain methods for carrying out this minimization. The methods are developed for the wide class of time series models having a spectrum which is linear in unknown coefficients. This includes the IMA(1, 1) model for which the common exponentially weigh-ted moving average predictor is optimal, besides more general structural models for series exhibiting trends and seasonality. The method is extended to include the Box–Jenkins `air line' model. The value of the multistep criterion is that it provides protection against using an incorrectly specified model. The value of frequency domain estimation is that the iteratively reweighted least squares scheme for fitting generalized linear models is readily extended to construct the parameter estimates and their standard errors. It also yields insight into the loss of efficiency when the model is correct and the robustness of the criterion against an incorrect model. A simple example is used to illustrate the method, and a real example demonstrates the extension to seasonal models. The discussion considers a diagnostic test statistic for indicating an incorrect model.     

The LASSO Method for Bilinear Time Series Models

In this article we propose a method called GLLS for the fitting of bilinear time series models. The GLLS procedure is the combination of the LASSO method, the generalized cross-validation method, the least angle regression method, and the stepwise regression method. Compared with the traditional methods such as the repeated residual method and the genetic algorithm, GLLS has the advantage of shrinking the coefficients of the models and saving the computational time. The Monte Carlo simulation studies and a real data example are reported to assess the performance of the proposed GLLS method.     

Estimation in conditional first order autoregression with discrete support

We consider estimation in the class of first order conditional linear autoregressive models with discrete support that are routinely used to model time series of counts. Various groups of estimators proposed in the literature are discussed: moment-based estimators; regression-based estimators; and likelihood-based estimators. Some of these have been used previously and others not. In particular, we address the performance of new types of generalized method of moments estimators and propose an exact maximum likelihood procedure valid for a Poisson marginal model using backcasting. The small sample properties of all estimators are comprehensively analyzed using simulation. Three situations are considered using data generated with: a fixed autoregressive parameter and equidispersed Poisson innovations; negative binomial innovations; and, additionally, a random autoregressive coefficient. The first set of experiments indicates that bias correction methods, not hitherto used in this context to our knowledge, are some-times needed and that likelihood-based estimators, as might be expected, perform well. The second two scenarios are representative of overdispersion. Methods designed specifically for the Poisson context now perform uniformly badly, but simple, bias-corrected, Yule-Walker and least squares estimators perform well in all cases.     

空间回归模型估计中的最小二乘法

空间回归模型由于引入了空间地理信息而使得其参数估计变得复杂,因为主要采用最大似然法,致使一般人认为在空间回归模型参数估计中不存在最小二乘法。通过分析空间回归模型的参数估计技术,研究发现,最小二乘法和最大似然法分别用于估计空间回归模型的不同的参数,只有将两者结合起来才能快速有效地完成全部的参数估计。数理论证结果表明,空间回归模型参数最小二乘估计量是最佳线性无偏估计量。空间回归模型的回归参数可以在估计量为正态性的条件下而实施显著性检验,而空间效应参数则不可以用此方法进行检验。     

A comparison of sampling grids,cut-off distance and type of residuals in parametric variogram estimation

In spatial statistics, the correct identification of a variogram model when fitted to an empirical variogram depends on many factors. Here, simulation experiments show fitting based on the variogram cloud is preferable to that based on Matheron's and Cressie–Hawkins empirical variogram estimators. For correct model specification, a number of models should be fitted to the empirical variogram using a grid of cut-off values, and recommendations are given for best choice. A design where roughly half the maximum distance between points equals the practical range works well for correct variogram identification of any model, with varying nugget sizes and sample sizes.     

Recursive Estimation of GARCH Models

This article develops three recursive on-line algorithms, based on a two-stage least squares scheme for estimating generalized autoregressive conditionally heteroskedastic (GARCH) models. The first one, denoted by 2S-RLS, is an adaptation of the recursive least squares method for estimating autoregressive conditionally heteroskedastic (ARCH) models. The second and the third ones (denoted, respectively, by 2S-PLR and 2S-RML) are adapted versions of the pseudolinear regression (PLR) and the recursive maximum likelihood (RML) methods to the GARCH case. We show that the proposed algorithms give consistent estimators and that the 2S-RLS and the 2S-RML estimators are asymptotically Gaussian. These methods seem very adequate for modeling the sequential feature of financial time series, which are observed on a high-frequency basis. The performance of these algorithms is shown via a simulation study.     

Efficiency of least squares estimators in the presence of spatial autocorrelation

The effect of spatial autocorrelation on inferences made using ordinary least squares estimation is considered. It is found, in some cases, that ordinary least squares estimators provide a reasonable alternative to the estimated generalized least squares estimators recommended in the spatial statistics literature. One of the most serious problems in using ordinary least squares is that the usual variance estimators are severely biased when the errors are correlated. An alternative variance estimator that adjusts for any observed correlation is proposed. The need to take autocorrelation into account in variance estimation negates much of the advantage that ordinary least squares estimation has in terms of computational simplicity     

Estimation in large cross random-effect models by data augmentation

Estimation in mixed linear models is, in general, computationally demanding, since applied problems may involve extensive data sets and large numbers of random effects. Existing computer algorithms are slow and/or require large amounts of memory. These problems are compounded in generalized linear mixed models for categorical data, since even approximate methods involve fitting of a linear mixed model within steps of an iteratively reweighted least squares algorithm. Only in models in which the random effects are hierarchically nested can the computations for fitting these models to large data sets be carried out rapidly. We describe a data augmentation approach to these computational difficulties in which we repeatedly fit an overlapping series of submodels, incorporating the missing terms in each submodel as 'offsets'. The submodels are chosen so that they have a nested random-effect structure, thus allowing maximum exploitation of the computational efficiency which is available in this case. Examples of the use of the algorithm for both metric and discrete responses are discussed, all calculations being carried out using macros within the MLwiN program.     

Spatially-adaptive Penalties for Spline Fitting

The paper studies spline fitting with a roughness penalty that adapts to spatial heterogeneity in the regression function. The estimates are p th degree piecewise polynomials with p − 1 continuous derivatives. A large and fixed number of knots is used and smoothing is achieved by putting a quadratic penalty on the jumps of the p th derivative at the knots. To be spatially adaptive, the logarithm of the penalty is itself a linear spline but with relatively few knots and with values at the knots chosen to minimize the generalized cross validation (GCV) criterion. This locally-adaptive spline estimator is compared with other spline estimators in the literature such as cubic smoothing splines and knot-selection techniques for least squares regression. Our estimator can be interpreted as an empirical Bayes estimate for a prior allowing spatial heterogeneity. In cases of spatially heterogeneous regression functions, empirical Bayes confidence intervals using this prior achieve better pointwise coverage probabilities than confidence intervals based on a global-penalty parameter. The method is developed first for univariate models and then extended to additive models.     

Generalized least squares estimation of multivariate nonlinear models with missing data

The method of estimated generalized least squares estimation of multiple response models is extended to the randomly missing date case. This estimation procedure is computationally simply when there are many missing data but the number of distinct patterns of missing data for the response vectors is small. The consistency and asymptotic normality of the proposed estimators are established.     

Inference in generalized additive mixed modelsby using smoothing splines

Generalized additive mixed models are proposed for overdispersed and correlated data, which arise frequently in studies involving clustered, hierarchical and spatial designs. This class of models allows flexible functional dependence of an outcome variable on covariates by using nonparametric regression, while accounting for correlation between observations by using random effects. We estimate nonparametric functions by using smoothing splines and jointly estimate smoothing parameters and variance components by using marginal quasi-likelihood. Because numerical integration is often required by maximizing the objective functions, double penalized quasi-likelihood is proposed to make approximate inference. Frequentist and Bayesian inferences are compared. A key feature of the method proposed is that it allows us to make systematic inference on all model components within a unified parametric mixed model framework and can be easily implemented by fitting a working generalized linear mixed model by using existing statistical software. A bias correction procedure is also proposed to improve the performance of double penalized quasi-likelihood for sparse data. We illustrate the method with an application to infectious disease data and we evaluate its performance through simulation.     

Heteroskedastic linear regression model with compositional response and covariates

Compositional data are known as a sort of complex multidimensional data with the feature that reflect the relative information rather than absolute information. There are a variety of models for regression analysis with compositional variables. Similar to the traditional regression analysis, the heteroskedasticity still exists in these models. However, the existing heteroskedastic regression analysis methods cannot apply in these models with compositional error term. In this paper, we mainly study the heteroskedastic linear regression model with compositional response and covariates. The parameter estimator is obtained through weighted least squares method. For the hypothesis test of parameter, the test statistic is based on the original least squares estimator and corresponding heteroskedasticity-consistent covariance matrix estimator. When the proposed method is applied to both simulation and real example, we use the original least squares method as a comparison during the whole process. The results implicate the model's practicality and effectiveness in regression analysis with heteroskedasticity.     

Feasible robust estimator in restricted semiparametric regression models based on the LTS approach

Under some nonstochastic linear restrictions based on either additional information or prior knowledge in a semiparametric regression model, a family of feasible generalized robust estimators for the regression parameter is proposed. The least trimmed squares (LTS) method proposed by Rousseeuw as a highly robust regression estimator is a statistical technique for fitting a regression model based on the subset of h observations (out of n) whose least-square fit possesses the smallest sum of squared residuals. The coverage h may be set between n/2 and n. The LTS estimator involves computing the hyperplane that minimizes the sum of the smallest h squared residuals. For practical purpose, it is assumed that the covariance matrix of the error term is unknown and thus feasible estimators are replaced. Then, we develop an algorithm for the LTS estimator based on feasible methods. Through the Monte Carlo simulation studies and a real data example, performance of the feasible type of robust estimators is compared with the classical ones in restricted semiparametric regression models.