The cluster correlation-network support vector machine for high-dimensional binary classification

ABSTRACT

Identifying homogeneous subsets of predictors in classification can be challenging in the presence of high-dimensional data with highly correlated variables. We propose a new method called cluster correlation-network support vector machine (CCNSVM) that simultaneously estimates clusters of predictors that are relevant for classification and coefficients of penalized SVM. The new CCN penalty is a function of the well-known Topological Overlap Matrix whose entries measure the strength of connectivity between predictors. CCNSVM implements an efficient algorithm that alternates between searching for predictors’ clusters and optimizing a penalized SVM loss function using Majorization–Minimization tricks and a coordinate descent algorithm. This combining of clustering and sparsity into a single procedure provides additional insights into the power of exploring dimension reduction structure in high-dimensional binary classification. Simulation studies are considered to compare the performance of our procedure to its competitors. A practical application of CCNSVM on DNA methylation data illustrates its good behaviour.     

Interpreting the Principal Component Analysis of Multivariate Density Functions

Functional principal component analysis (FPCA) as a reduction data technique of a finite number T of functions can be used to identify the dominant modes of variation of numeric three-way data.

We carry out the FPCA on multidimensional probability density functions, relate this method to other standard methods and define its centered or standardized versions. Grounded on the relationship between FPCA of densities, FPCA of their corresponding characteristic functions, PCA of the MacLaurin expansions of these characteristic functions and dual STATIS method applied to their variance matrices, we propose a method for interpreting the results of the FPCA of densities. This method is based on the investigations of the relationships between the scores of the FPCA and the moments associated to the densities.

The method is illustrated using known Gaussian densities. In practice, FPCA of densities deals with observations of multidimensional variables on T occasions. These observations can be used to estimate the T associated densities (i) by estimating the parameters of these densities, assuming that they are Gaussian, or (ii) by using the Gaussian kernel method and choosing the matrix bandwidth by the normal reference rule. Thereafter, FPCA estimate is derived from these estimates and the interpretation method is carried out to explore the dominant modes of variation of the types of three-way data encountered in sensory analysis and archaeology.     

Does the internet change how we die and mourn? Overview and analysis

The article outlines the issues that the internet presents to death studies. Part 1 describes a range of online practices that may affect dying, the funeral, grief and memorialization, inheritance and archaeology; it also summarizes the kinds of research that have been done in these fields. Part 2 argues that these new online practices have implications for, and may be illuminated by, key concepts in death studies: the sequestration (or separation from everyday life) of death and dying, disenfranchisement of grief, private grief, social death, illness and grief narratives, continuing bonds with the dead, and the presence of the dead in society. In particular, social network sites can bring dying and grieving out of both the private and public realms and into the everyday life of social networks beyond the immediate family, and provide an audience for once private communications with the dead.     

Mixed-spectra analysis for stationary random fields

We consider a, discrete time, weakly stationary bidimensional process, for which the spectral measure is the sum of an absolutely continuous measure, a discrete measure of finite order and a finite number of absolutely continuous measures on several lines. In this paper we are interested in estimating the spectral density of the absolutely continuous measure and of the density on the lines. For this aim, by using the double kernel method, we construct consistent estimators of these densities and we study their asymptotic behaviors in term of the mean squared error with rate.     

The Reception of Sufism in the West: The Mystical Experiences of American and European Converts

In the last decade, Islamophobia and racism have become rampant in the West, particularly in the United States of America and Europe. Muslims, whether they are immigrants or not, practitioners or not, are frequently prejudiced and discriminated against. The observer of the world scene is more likely to note that Sufis are valorized by a large audience. Compared to cults that identify themselves with the Salafi or Wahhabi ideology, the Sufi folk are usually defined as peaceful, tolerant and moderate. It is not a coincidence then to find that the Sufi leaders are working tremendously hard to promote love and peace worldwide. The present paper is an attempt to sketch out the reception of Sufism (Islamic mysticism) in the West. More particularly, it sheds light on the experiences of some Western converts, whose attraction to and fascination with Sufism is immeasurable. Central to this enquiry is the reception theory, which claims that people receive discourse in different ways.     

An Automated MCEM Algorithm for Hierarchical Models with Multivariate and Multitype Response Variables

In this article, we consider a model allowing the analysis of multivariate data, which can contain data attributes of different types (e.g., continuous, discrete, binary). This model is a two-level hierarchical model which supports a wide range of correlation structures and can accommodate overdispersed data. Maximum likelihood estimation of the model parameters is achieved with an automated Monte Carlo expectation maximization algorithm. Our method is tested in a simulation study in the bivariate case and applied to a data set dealing with beehive activity.     

Spatio-temporal functional regression on paleoecological data

There is much interest in predicting the impact of global warming on the genetic diversity of natural populations and the influence of climate on biodiversity is an important ecological question. Since Holocene, we face many climate perturbations and the geographical ranges of plant taxa have changed substantially. Actual genetic diversity of plant is a result of these processes and a first step to study the impact of future climate change is to understand the important features of reconstructed climate variables such as temperature or precipitation for the last 15,000 years on actual genetic diversity of forest. We model the relationship between genetic diversity in the European beech (Fagus sylvatica) forests and curves of temperature and precipitation reconstructed from pollen databases. Our model links the genetic measure to the climate curves. We adapt classical functional linear model to take into account interactions between climate variables as a bilinear form. Since the data are georeferenced, our extensions also account for the spatial dependence among the observations. The practical issues of these methodological extensions are discussed.