An extended association rule mining strategy for gene relationship discovery from microarray data

DNA microarrays allow for measuring expression levels of a large number of genes between different experimental conditions and/or samples. Association rule mining (ARM) methods are helpful in finding associational relationships between genes. However, classical association rule mining (CARM) algorithms extract only a subset of the associations that exist among different binary states; therefore can only infer part of the relationships on gene regulations. To resolve this problem, we developed an extended association rule mining (EARM) strategy along with a new way of the association rule definition. Compared with the CARM method, our new approach extracted more frequent genesets from a public microarray data set. The EARM method discovered some biologically interesting association rules that were not detected by CARM. Therefore, EARM provides an effective tool for exploring relationships among genes.