Randomized response multivariate designs for categorical data

Three approaches to multivariate estimation for categorical data using randomized response (RR) are described. In the first approach, practical only for 2×2 contingency tables, a multi-proportions design is used. In the second approach, a separate RR trial is used for each variate and it is noted that the multi­variate design matrix of conditional probabilities is given by the Kroneeker product of the univariate design matrices of each trial, provided that the trials are independent of each other in a certain sense. The third approach requires only a single randomization and thus may be viewed as the use of vector response. Finally, a special-purpose bivariate design is presented.     

On analysis of binary response data in longitudinal factorial studies

Binary data are commonly used as responses to assess the effects of independent variables in longitudinal factorial studies. Such effects can be assessed in terms of the rate difference (RD), the odds ratio (OR), or the rate ratio (RR). Traditionally, the logistic regression seems always a recommended method with statistical comparisons made in terms of the OR. Statistical inference in terms of the RD and RR can then be derived using the delta method. However, this approach is hard to realize when repeated measures occur. To obtain statistical inference in longitudinal factorial studies, the current article shows that the mixed-effects model for repeated measures, the logistic regression for repeated measures, the log-transformed regression for repeated measures, and the rank-based methods are all valid methods that lead to inference in terms of the RD, OR, and RR, respectively. Asymptotic linear relationships between the estimators of the regression coefficients of these models are derived when the weight (working covariance) matrix is an identity matrix. Conditions for the Wald-type tests to be asymptotically equivalent in these models are provided and powers were compared using simulation studies. A phase III clinical trial is used to illustrate the investigated methods with corresponding SAS® code supplied.     

Aligned rank statistics for repeated measurement models with orthonormal design, employing a Chernoff–Savage approach

In this paper, aligned rank statistics are considered for testing hypotheses regarding the location in repeated measurement designs, where the design matrix for each set of measurements is orthonormal. Such a design may, for instance, be used when testing for linearity. It turns out that the centered design matrix is not of full rank, and therefore it does not quite satisfy the usual conditions in the literature. The number of degrees of freedom of the limiting chi-square distribution of the test statistic under the null hypothesis, however, is not affected, unless rather special hypotheses are tested. An independent derivation of this limiting distribution is given, using the Chernoff–Savage approach. In passing, it is observed that independence of the choice of aligner, which in the location problem is well-known to be due to cancellation, may in scale problems occur as a result of the type of score function suitable for scale tests. A possible extension to multivariate data is briefly indicated.     

On the analysis of multivariate repeated measures designs

The relationship between the mixed-model analysis and multivariate approach to a repeated measures design with multiple responses is presented. It is shown that by taking the trace of the appropriate submatrix of the hypothesis (error) sums of squares and crossproducts (SSCP) matrix obtained from the multivariate approach, one can get the hypothesis (error) SSCP matrix for the mixed-model analysis. Thus, when analyzing data from a multivariate repeated measures design, it is advantageous to use the multivariate approach because the result of the mixed-model analysis can also be obtained without additional computation.     

Testing for lack of fit in linear multiresponse models based on exact or near replicates

Three procedures for testing the adequacy of a proposed linear multiresponse regression model against unspecified general alternatives are considered. The model has an error structure with a matrix normal distribution which allows the vector of responses for a particular run to have an unknown covariance matrix while the responses for different runs are uncorrelated. Furthermore, each response variable may be modeled by a separate design matrix. Multivariate statistics corresponding to the classical univariate lack of fit and pure error sums of squares are defined and used to determine the multivariate lack of fit tests. A simulation study was performed to compare the power functions of the test procedures in the case of replication. Generalizations of the tests for the case in which there are no independent replicates on all responses are also presented.     

Optimal designs for multivariate logistic mixed models with longitudinal data

This paper considers the optimal design problem for multivariate mixed-effects logistic models with longitudinal data. A decomposition method of the binary outcome and the penalized quasi-likelihood are used to obtain the information matrix. The D-optimality criterion based on the approximate information matrix is minimized under different cost constraints. The results show that the autocorrelation coefficient plays a significant role in the design. To overcome the dependence of the D-optimal designs on the unknown fixed-effects parameters, the Bayesian D-optimality criterion is proposed. The relative efficiencies of designs reveal that both the cost ratio and autocorrelation coefficient play an important role in the optimal designs.     

Estimating a distribution for each category of a sensitive variate

The use of a Randomized Response (RR) design makes it possible to estimate the distribution of a sensitive variate. In this paper, the estimation of the distribution of a non-sensitive variate for each category of a sensitive variate is considered for the case where data on the sensitive variate is obtained by use of an RR procedure. Simple estimators are developed without making any distributional assumptions about the non-sensitive variate. However, if distributional assumptions are made, it is shown that the EM algorithm may be used to compute Maximum Likelihood estimates. Computational comparisons of the estimators, using simulation, indicate that the simple estimators perform well, particularly for large sample sizes.     

Remove unwanted variation retrieves unknown experimental designs

Remove unwanted variation (RUV) is an estimation and normalization system in which the underlying correlation structure of a multivariate dataset is estimated from negative control measurements, typically gene expression values, which are assumed to stay constant across experimental conditions. In this paper we derive the weight matrix which is estimated and incorporated into the generalized least squares estimates of RUV-inverse, and show that this weight matrix estimates the average covariance matrix across negative control measurements. RUV-inverse can thus be viewed as an estimation method adjusting for an unknown experimental design. We show that for a balanced incomplete block design (BIBD), RUV-inverse recovers intra- and interblock estimates of the relevant parameters and combines them as a weighted sum just like the best linear unbiased estimator (BLUE), except that the weights are globally estimated from the negative control measurements instead of being individually optimized to each measurement as in the classical, single measurement BIBD BLUE.     

Analysis of multivariate repeated measures data with a Kronecker product structured covariance matrix

In this article we consider a set of t repeated measurements on p variables (or characteristics) on each of the n individuals. Thus, data on each individual is a p ×t matrix. The n individuals themselves may be divided and randomly assigned to g groups. Analysis of these data using a MANOVA model, assuming that the data on an individual has a covariance matrix which is a Kronecker product of two positive definite matrices, is considered. The well-known Satterthwaite type approximation to the distribution of a quadratic form in normal variables is extended to the distribution of a multivariate quadratic form in multivariate normal variables. The multivariate tests using this approximation are developed for testing the usual hypotheses. Results are illustrated on a data set. A method for analysing unbalanced data is also discussed.     

Maximum likelihood estimates in the multivariate normal with patterned mean and covariance via the em algorithm

The maximum likelihood equations for a multivariate normal model with structured mean and structured covariance matrix may not have an explicit solution. In some cases the model's error term may be decomposed as the sum of two independent error terms, each having a patterned covariance matrix, such that if one of the unobservable error terms is artificially treated as "missing data", the EM algorithm can be used to compute the maximum likelihood estimates for the original problem. Some decompositions produce likelihood equations which do not have an explicit solution at each iteration of the EM algorithm, but within-iteration explicit solutions are shown for two general classes of models including covariance component models used for analysis of longitudinal data.     

On randomized response surveys for estimating a proportion

In studies about sensitive characteristics, randomized response (RR) methods are useful for generating reliable data, protecting respondents’ privacy. It is shown that all RR surveys for estimating a proportion can be encompassed in a common model and some general results for statistical inferences can be used for any given survey. The concepts of design and scheme are introduced for characterizing RR surveys. Some consequences of comparing RR designs based on statistical measures of efficiency and respondent’ protection are discussed. In particular, such comparisons lead to the designs that may not be suitable in practice. It is suggested that one should consider other criteria and the scheme parameters for planning a RR survey.     

Eliciting Dirichlet and Gaussian copula prior distributions for multinomial models

In this paper, we propose novel methods of quantifying expert opinion about prior distributions for multinomial models. Two different multivariate priors are elicited using median and quartile assessments of the multinomial probabilities. First, we start by eliciting a univariate beta distribution for the probability of each category. Then we elicit the hyperparameters of the Dirichlet distribution, as a tractable conjugate prior, from those of the univariate betas through various forms of reconciliation using least-squares techniques. However, a multivariate copula function will give a more flexible correlation structure between multinomial parameters if it is used as their multivariate prior distribution. So, second, we use beta marginal distributions to construct a Gaussian copula as a multivariate normal distribution function that binds these marginals and expresses the dependence structure between them. The proposed method elicits a positive-definite correlation matrix of this Gaussian copula. The two proposed methods are designed to be used through interactive graphical software written in Java.     

Comparison of designs for multivariate generalized linear models

The purpose of this paper is to discuss response surface designs for multivariate generalized linear models (GLMs). Such models are considered whenever several response variables can be measured for each setting of a group of control variables, and the response variables are adequately represented by GLMs. The mean-squared error of prediction (MSEP) matrix is used to assess the quality of prediction associated with a given design. The MSEP incorporates both the prediction variance and the prediction bias, which results from using maximum likelihood estimates of the parameters of the fitted linear predictor. For a given design, quantiles of a scalar-valued function of the MSEP are obtained within a certain region of interest. The quantiles depend on the unknown parameters of the linear predictor. The dispersion of these quantiles over the space of the unknown parameters is determined and then depicted by the so-called quantile dispersion graphs. An application of the proposed methodology is presented using the special case of the bivariate binary distribution.     

Distribution of multivariate quadratic forms under certain covariance structures

Necessary and sufficient conditions are given for the covariance structure of all the observations in a multivariate factorial experiment under which certain multivariate quadratic forms are independent and distributed as a constant times a Wishart. It is also shown that exact multivariate test statistics can be formed for certain covariance structures of the observations when the assumption of equal covariance matrices for each normal population is relaxed. A characterization is given for the dependency structure between random vectors in which the sample mean and sample covariance matrix have certain properties.     

Multivariate analysis with a stationary time series covariance structure

When a covariance matrix has a pattern associated with a stationary time series on the errors, it is shown how certain hypothesis testing problems In multivariate analysis can be transformed into a product of two similar multivariate problems that each involve unpatterned covariance matrices.     

Admissibilities of matrix linear estimators multivariate linear models

This article respectively provides sufficient conditions and necessary conditions of matrix linear estimators of an estimable parameter matrix linear function in multivariate linear models with and without the assumption that the underlying distribution is a normal one with completely unknown covariance matrix. In the latter model, a necessary and sufficient condition is given for matrix linear estimators to be admissible in the space of all matrix linear estimators under each of three different kinds of quadratic matrix loss functions, respectively. In the former model, a sufficient condition is first provided for matrix linear estimators to be admissible in the space of all matrix estimators having finite risks under each of the same loss functions, respectively. Furthermore in the former model, one of these sufficient conditions, correspondingly under one of the loss functions, is also proved to be necessary, if additional conditions are assumed.     

Posterior moments of scalar functions of a covariance matrix

Given multivariate normal data and a certain spherically invariant prior distribution on the covariance matrix, it is desired to estimate the moments of the posterior marginal distributions of some scalar functions of the covariance matrix by importance sampling. To this end a family of distributions is defined on the group of orthogonal matrices and a procedure is proposed for selecting one of these distributions for use as a weighting distribution in the importance sampling process. In an example estimates are calculated for the posterior mean and variance of each element in the covariance matrix expressed in the original coordinates, for the posterior mean of each element in the correlation matrix expressed in the original coordinates, and for the posterior mean of each element in the covariance matrix expressed in the coordinates of the principal variables.     

Sequential monitoring of high-dimensional time series

In the paper we derive new types of multivariate exponentially weighted moving average (EWMA) control charts which are based on the Euclidean distance and on the distance defined by using the inverse of the diagonal matrix consisting of the variances. The design of the proposed control schemes does not involve the computation of the inverse covariance matrix and, thus, it can be used in the high-dimensional setting. The distributional properties of the control statistics are obtained and are used in the determination of the new control procedures. Within an extensive simulation study, the new approaches are compared with the multivariate EWMA control charts which are based on the Mahalanobis distance.     

Using a mixture model for multiple imputation in the presence of outliers: the 'Healthy for life' project

Summary.  We consider the problem of obtaining population-based inference in the presence of missing data and outliers in the context of estimating the prevalence of obesity and body mass index measures from the 'Healthy for life' study. Identifying multiple outliers in a multivariate setting is problematic because of problems such as masking, in which groups of outliers inflate the covariance matrix in a fashion that prevents their identification when included, and swamping, in which outliers skew covariances in a fashion that makes non-outlying observations appear to be outliers. We develop a latent class model that assumes that each observation belongs to one of K unobserved latent classes, with each latent class having a distinct covariance matrix. We consider the latent class covariance matrix with the largest determinant to form an 'outlier class'. By separating the covariance matrix for the outliers from the covariance matrices for the remainder of the data, we avoid the problems of masking and swamping. As did Ghosh-Dastidar and Schafer, we use a multiple-imputation approach, which allows us simultaneously to conduct inference after removing cases that appear to be outliers and to promulgate uncertainty in the outlier status through the model inference. We extend the work of Ghosh-Dastidar and Schafer by embedding the outlier class in a larger mixture model, consider penalized likelihood and posterior predictive distributions to assess model choice and model fit, and develop the model in a fashion to account for the complex sample design. We also consider the repeated sampling properties of the multiple imputation removal of outliers.     

A note on multivariate linear regression

In this note, a hypothesis test based on relevant statistical differences is proposed for multivariate linear regression models whose design matrix rank does not equal the number of regression variables. A statistical example is also provided to illustrate the proposed hypothesis test.