On the adjacent vertex-distinguishing total chromatic numbers of the graphs with Δ (G) = 3

Let be a simple graph and T(G) be the set of vertices and edges of G. Let C be a k-color set. A (proper) total k-coloring f of G is a function such that no adjacent or incident elements of T(G) receive the same color. For any , denote . The total k-coloring f of G is called the adjacent vertex-distinguishing if for any edge . And the smallest number of colors is called the adjacent vertex-distinguishing total chromatic number of G. In this paper, we prove that for all connected graphs with maximum degree three. This is a step towards a conjecture on the adjacent vertex-distinguishing total coloring. MSC: 05C15     

Graphs with large paired-domination number

In this paper, we continue the study of paired-domination in graphs introduced by Haynes and Slater (1998) Networks 32: 199–206. A paired-dominating set of a graph G with no isolated vertex is a dominating set of vertices whose induced subgraph has a perfect matching. The paired-domination number of G, denoted by , is the minimum cardinality of a paired-dominating set of G. Let G be a connected graph of order n with minimum degree at least two. Haynes and Slater (1998) Networks 32: 199–206, showed that if n ≥ 6, then . In this paper, we show that there are exactly ten graphs that achieve equality in this bound. For n ≥ 14, we show that and we characterize the (infinite family of) graphs that achieve equality in this bound.Research supported in part by the South African National Research Foundation and the University of KwaZulu-Natal.     

Domination and total domination in complementary prisms

Let G be a graph and be the complement of G. The complementary prism of G is the graph formed from the disjoint union of G and by adding the edges of a perfect matching between the corresponding vertices of G and . For example, if G is a 5-cycle, then is the Petersen graph. In this paper we consider domination and total domination numbers of complementary prisms. For any graph G, and , where γ(G) and γ _t (G) denote the domination and total domination numbers of G, respectively. Among other results, we characterize the graphs G attaining these lower bounds. Research supported in part by the South African National Research Foundation and the University of KwaZulu-Natal.     

Fast algorithms for computing the tripartition-based distance between phylogenetic networks

Consider two phylogenetic networks and ’ of size n. The tripartition-based distance finds the proportion of tripartitions which are not shared by and ’. This distance is proposed by Moret et al. (2004) and is a generalization of Robinson-Foulds distance, which is orginally used to compare two phylogenetic trees. This paper gives an -time algorithm to compute this distance, where h is the number of hybrid nodes in and ’ while k is the maximum number of hybrid nodes among all biconnected components in and ’. Note that $k \ll h \ll n$ in a phylogenetic network. In addition, we propose algorithms for comparing galled-trees, which are an important, biological meaningful special case of phylogenetic network. We give an $O(n)$-time algorithm for comparing two galled-trees. We also give an -time algorithm for comparing a galled-tree with another general network, where h and k are the number of hybrid nodes in the latter network and its biggest biconnected component respectively.     

Finding a Noncrossing Steiner Forest in Plane Graphs Under a 2-Face Condition

Let G = (V,E) be a plane graph with nonnegative edge weights, and let be a family of k vertex sets , called nets. Then a noncrossing Steiner forest for in G is a set of k trees in G such that each tree connects all vertices, called terminals, in net N _i, any two trees in do not cross each other, and the sum of edge weights of all trees is minimum. In this paper we give an algorithm to find a noncrossing Steiner forest in a plane graph G for the case where all terminals in nets lie on any two of the face boundaries of G. The algorithm takes time if G has n vertices and each net contains a bounded number of terminals.     

Efficient algorithms for finding a longest common increasing subsequence

We study the problem of finding a longest common increasing subsequence (LCIS) of multiple sequences of numbers. The LCIS problem is a fundamental issue in various application areas, including the whole genome alignment. In this paper we give an efficient algorithm to find the LCIS of two sequences in time where n is the length of each sequence andr is the number of ordered pairs of positions at which the two sequences match, ℓ is the length of the LCIS, and Sort(n) is the time to sort n numbers. For m sequences wherem ≥ 3, we find the LCIS in Sort(n)) time where r is the total number of m-tuples of positions at which the m sequences match. The previous results find the LCIS of two sequences in O(n ²) and Sort(n)) time. Our algorithm is faster when r is relatively small, e.g., for .     

Improved algorithms for largest cardinality 2-interval pattern problem

The 2-INTERVAL PATTERN problem is to find the largest constrained pattern in a set of 2-intervals. The constrained pattern is a subset of the given 2-intervals such that any pair of them are R-comparable, where model . The problem stems from the study of general representation of RNA secondary structures. In this paper, we give three improved algorithms for different models. Firstly, an O(n{log} n +L) algorithm is proposed for the case , where is the total length of all 2-intervals (density d is the maximum number of 2-intervals over any point). This improves previous O(n ²log n) algorithm. Secondly, we use dynamic programming techniques to obtain an O(nlog n + dn) algorithm for the case R = { <, ⊏ }, which improves previous O(n ²) result. Finally, we present another algorithm for the case with disjoint support(interval ground set), which improves previous O(n ²□n) upper bound. A preliminary version of this article appears in Proceedings of the 16th Annual International Symposium on Algorithms and Computation, Springer LNCS, Vol. 3827, pp. 412–421, Hainan, China, December 19–21, 2005.     

Optimal st-orientations for plane triangulations

For plane triangulations, it has been proved that there exists a plane triangulation G with n vertices such that for any st-orientation of G, the length of the longest directed paths of G in the st-orientation is (Zhang and He in Lecture Notes in Computer Science, vol. 3383, pp. 425–430, 2005). In this paper, we prove the bound is optimal by showing that every plane triangulation G with n-vertices admits an st-orientation with the length of its longest directed paths bounded by . In addition, this st-orientation is constructible in linear time. A by-product of this result is that every plane graph G with n vertices admits a visibility representation with height , constructible in linear time, which is also optimal. A preliminary version of this paper was presented at AAIM 2007.     

On zero error algorithms having oracle access to one query

It is known that (Cai, 2001). The reverse direction of whether ZPP^NP is contained in remains open. We show that if the zero-error algorithm is allowed to ask only one query to the NP oracle (for any input and random string), then it can be simulated in . That is, we prove that . Next we consider whether the above result can be improved as and point out a difficulty in doing so. Via a simple proof, we observe that BPP ⊆ ZPP^NP[1] (a result implicitly proven in some prior work). Thus, achieving the above improvement would imply BPP ⊆ P^NP, settling a long standing open problem. We then argue that the above mentioned improvement can be obtained for the next level of the polynomial time hierarchy. Namely, we prove that . On the other hand, by adapting our proof of our main result it can be shown that . For the purpose of comparing these two results, we prove that . We conclude by observing that the above claims extend to the higher levels of the hierarchy: for k ≥ 2, and . Research supported in part by NSF grant CCR-0208013. A preliminary version of the paper was presented at COCOON′05 Cai and Chakaravarthy (2005). Part of the research was conducted while the author was at the University of Wisconsin, Madison.     

Improved approximation algorithms for metric MaxTSP

We present two polynomial-time approximation algorithms for the metric case of the maximum traveling salesman problem. One of them is for directed graphs and its approximation ratio is . The other is for undirected graphs and its approximation ratio is . Both algorithms improve on the previous bests. A preliminary version of this paper appeared in the Proceedings of 13th European Symposium on Algorithms (ESA2005), Lecture Notes in Computer Science, Vol. 3669, pp. 179–190, 2005.     

Parameterized dominating set problem in chordal graphs: complexity and lower bound

In this paper, we study the parameterized dominating set problem in chordal graphs. The goal of the problem is to determine whether a given chordal graph G=(V,E) contains a dominating set of size k or not, where k is an integer parameter. We show that the problem is W[1]-hard and it cannot be solved in time unless 3SAT can be solved in subexponential time. In addition, we show that the upper bound of this problem can be improved to when the underlying graph G is an interval graph.     

Construction of the nearest neighbor embracing graph of a point set

This paper gives optimal algorithms for the construction of the Nearest Neighbor Embracing Graph (NNE-graph) of a given point set V of size n in the k-dimensional space (k-D) for k = 2,3. The NNE-graph provides another way of connecting points in a communication network, which has lower expected degree at each point and shorter total length of connections with respect to those using Delaunay triangulation. In fact, the NNE-graph can also be used as a tool to test whether a point set is randomly generated or has some particular properties. We show that in 2-D the NNE-graph can be constructed in optimal time in the worst case. We also present an time algorithm, where d is the -th largest degree in the utput NNE-graph. The algorithm is optimal when . The algorithm is also sensitive to the structure of the NNE-graph, for instance when , the number of edges in NNE-graph is bounded by for any value g with . We finally propose an time algorithm for the problem in 3-D, where d and are the -th largest vertex degree and the largest vertex degree in the NNE-graph, respectively. The algorithm is optimal when the largest vertex degree of the NNE-graph is .     

Packing <Emphasis Type="Bold">[1, Δ]</Emphasis>-factors in graphs of small degree

Given an undirected, connected graph G with maximum degree Δ, we introduce the concept of a [1, Δ]-factor k-packing in G, defined as a set of k edge-disjoint subgraphs of G such that every vertex of G has an incident edge in at least one subgraph. The problem of deciding whether a graph admits a [1,Δ]-factor k-packing is shown to be solvable in linear time for k = 2, but NP-complete for all k≥ 3. For k = 2, the optimisation problem of minimising the total number of edges of the subgraphs of the packing is NP-hard even when restricted to subcubic planar graphs, but can in general be approximated within a factor of by reduction to the Maximum 2-Edge-Colorable Subgraph problem. Finally, we discuss implications of the obtained results for the problem of fault-tolerant guarding of a grid, which provides the main motivation for research.     

On Ring Grooming in optical networks

An instance I of Ring Grooming consists of m sets A ₁,A ₂,…, A _m from the universe {0, 1,…, n − 1} and an integer g ≥ 2. The unrestricted variant of Ring Grooming, referred to as Unrestricted Ring Grooming, seeks a partition {P ₁ , P ₂, …,P _k } of {1, 2, …, m} such that for each 1 ≤ i ≤ k and is minimized. The restricted variant of Ring Grooming, referred to as Restricted Ring Grooming, seeks a partition of {1,2,…,m} such that | P _i | ≤ g for each and is minimized. If g = 2, we provide an optimal polynomial-time algorithm for both variants. If g > 2, we prove that both both variants are NP-hard even with fixed g. When g is a power of two, we propose an approximation algorithm called iterative matching. Its approximation ratio is exactly 1.5 when g = 4, at most 2.5 when g = 8, and at most in general while it is conjectured to be at most . The iterative matching algorithm is also extended for Unrestricted Ring Grooming with arbitrary g, and a loose upper bound on its approximation ratio is . In addition, set-cover based approximation algorithms have been proposed for both Unrestricted Ring Grooming and Restricted Ring Grooming. They have approximation ratios of at most 1 + log g, but running time in polynomial of m ^g . Work supported by a DIMACS postdoctoral fellowship.     

Center and Distinguisher for Strings with Unbounded Alphabet

Consider two sets and of strings of length L with characters from an unbounded alphabet , i.e., the size of is not bounded by a constant and has to be taken into consideration as a parameter for input size. A closest string s* of is a string that minimizes the maximum of Hamming¹ distance(s, s*) over all string s : s . In contrast, a farthest string t* from maximizes the minimum of Hamming distance(t*,t) over all elements t: t . A distinguisher of from is a string that is close to every string in and far away from any string in . We obtain polynomial time approximation schemes to settle the above problems.     

Minimum ε-equivalent Circuit Size Problem

For a Boolean function f given by its truth table (of length ) and a parameter s the problem considered is whether there is a Boolean function g -equivalent to f, i.e., , and computed by a circuit of size at most s. In this paper we investigate the complexity of this problem and show that for specific values of it is unlikely to be in P/poly. Under the same assumptions we also consider the optimization variant of the problem and prove its inapproximability.     

On-line production order scheduling with preemption penalties

This paper studies the on-line production order scheduling problem where each preemption causes a penalty, and the objective is to maximize the net profit, i.e., the total weights of completed orders minus the total penalties caused by preemptions. Two greedy strategies are shown to be at best and -competitive respectively, where Δ is the ratio between the longest and shortest length of order. After that we mainly present an improved strategy, named WAL, which takes advantage of the knowledge of Δ and is proved to be -competitive for Δ > 9. Furthermore, two lower bounds for deterministic strategies, and 6.33, are given for the cases of nonuniform and uniform length respectively. This research is supported by NSF of China under Grants 70471035, 70525004, 70121001 and 70602031.     

On the total {k}-domination number of Cartesian products of graphs

Let γ _t ^{k}(G) denote the total {k}-domination number of graph G, and let denote the Cartesian product of graphs G and H. In this paper, we show that for any graphs G and H without isolated vertices, . As a corollary of this result, we have for all graphs G and H without isolated vertices, which is given by Pak Tung Ho (Util. Math., 2008, to appear) and first appeared as a conjecture proposed by Henning and Rall (Graph. Comb. 21:63–69, 2005). The work was supported by NNSF of China (No. 10701068 and No. 10671191).     

On a hyperplane arrangement problem and tighter analysis of an error-tolerant pooling design

In this paper, we formulate and investigate the following problem: given integers d,k and r where k>r≥1,d≥2, and a prime power q, arrange d hyperplanes on to maximize the number of r-dimensional subspaces of each of which belongs to at least one of the hyperplanes. The problem is motivated by the need to give tighter bounds for an error-tolerant pooling design based on finite vector spaces. This work is partially supported by NSF CAREER Award CCF-0347565.     

Augmenting a Submodular and Posi-modular Set Function by a Multigraph

Given a finite set V and a set function , we consider the problem of constructing an undirected multigraph G = (V,E) such that the cut function together has value at least 2 for all non-empty and proper subsets of V. If f is intersecting submodular and posi-modular, and satisfies the tripartite inequality, then we show that such a multigraph G with the minimum number of edges can be found in time, where is the time to compute the value of f(X) for a subset .