Bayesian analysis of a multiple-recapture model

In the Bayesian analysis of a multiple-recapture census, different diffuse prior distributions can lead to markedly different inferences about the population size N. Through consideration of the Fisher information matrix it is shown that the number of captures in each sample typically provides little information about N. This suggests that if there is no prior information about capture probabilities, then knowledge of just the sample sizes and not the number of recaptures should leave the distribution of Nunchanged. A prior model that has this property is identified and the posterior distribution is examined. In particular, asymptotic estimates of the posterior mean and variance are derived. Differences between Bayesian and classical point and interval estimators are illustrated through examples.     

Bayesian inference in the triangular cointegration model using a jeffreys prior

This paper presents a strategy for conducting Bayesian inference in the triangular cointegration model. A Jeffreys prior is used to circumvent an identification problem in the parameter region in which there is a near lack of cointegration. Sampling experiments are used to compare the repeated sampling performance of the approach with alternative classical cointegration methods. The Bayesian procedure is applied to testing for substitution between private and public consumption for a range of countries, with posterior estimates produced via Markov Chain Monte Carlo simulators.     

Bayesian inference and prediction analysis of the power law process based on a natural conjugate prior

Under a natural conjugate prior with four hyperparameters, the importance sampling (IS) technique is applied to the Bayesian analysis of the power law process (PLP). Samples of the parameters of the PLP are obtained from IS. Based on these samples, not only the posterior analysis of parameters and some parameter functions in the PLP are performed conveniently, but also single-sample and two-sample prediction procedures are constructed easily. Furthermore, the sensitivity of the posterior mean of the parameter functions in the PLP is studied with respect to the hyperparameters of the natural conjugate prior and it can guide the selections of the hyperparameters directly. Coupled this sensitivity with the relations between the prior moments and the hyperparameters in the natural conjugate prior, it is possible to give directions about the selections of the prior moments to a certain degree. After some numerical experiments illustrate the rationality and feasibility of the proposed methods, an engineering example demonstrates its application.     

Nonparametric Bayesian inference for ergodic diffusions

The problem of nonparametric drift estimation for ergodic diffusions is studied from a Bayesian perspective. In particular, Gaussian process priors are exhibited that yield optimal contraction rates if the drift function belongs to a smoothness class.     

Bayesian inference for truncated exponential distributions

Truncated normal distributions are considered as prior distributions for the truncation parameter in truncated exponential models. Posterior istributions re obtained, and inferenceforthe truncation parameter and for the reliability function is discussed. One and two parameter models are considered.     

Bayesian inference for quantum state tomography

We present a Bayesian approach to the problem of estimating density matrices in quantum state tomography. A general framework is presented based on a suitable mathematical formulation, where a study of the convergence of the Monte Carlo Markov Chain algorithm is given, including a comparison with other estimation methods, such as maximum likelihood estimation and linear inversion. This analysis indicates that our approach not only recovers the underlying parameters quite properly, but also produces physically acceptable punctual and interval estimates. A prior sensitive study was conducted indicating that when useful prior information is available and incorporated, more accurate results are obtained. This general framework, which is based on a reparameterization of the model, allows an easier choice of the prior and proposal distributions for the Metropolis–Hastings algorithm.     

Non parametric Bayesian analysis of the two-sample problem with censoring

Testing for differences between two groups is a fundamental problem in statistics, and due to developments in Bayesian non parametrics and semiparametrics there has been renewed interest in approaches to this problem. Here we describe a new approach to developing such tests and introduce a class of such tests that take advantage of developments in Bayesian non parametric computing. This class of tests uses the connection between the Dirichlet process (DP) prior and the Wilcoxon rank sum test but extends this idea to the DP mixture prior. Here tests are developed that have appropriate frequentist sampling procedures for large samples but have the potential to outperform the usual frequentist tests. Extensions to interval and right censoring are considered and an application to a high-dimensional data set obtained from an RNA-Seq investigation demonstrates the practical utility of the method.     

Bayesian inference for bisexual galton-watson processes

In this work, an approach to the Bayesian estimation in a bisexual Galton-Watson process is considered. First we study an important parametric case assuming offspring distribution belonging to the bivariate series power family of distributions and then, we continue to investigate the nonparametric case. In both situations, Bayes estimators under weighted squared error loss function, for means, variances and covariance of the off spring distribution are obtained. For the superadditive case, the Bayes estimation of the asymptotic growth rate is also considered. Illustrative examples are given.     

Bayesian and fiducial inference for the inverse gaussian distribution via Gibbs sampler

This paper presents a kernel estimation of the distribution of the scale parameter of the inverse Gaussian distribution under type II censoring together with the distribution of the remaining time. Estimation is carried out via the Gibbs sampling algorithm combined with a missing data approach. Estimates and confidence intervals for the parameters of interest are also presented.     

Sensitivity of a bayesian inference to prior assumptions

The sensitivity of-a Bayesian inference to prior assumptions is examined by Monte Carlo simulation for the beta-binomial conjugate family of distributions. Results for the effect on a Bayesian probability interval of the binomial parameter indicate that the Bayesian inference is for the most part quite sensitive to misspecification of the prior distribution. The magnitude of the sensitivity depends primarily on the difference of assigned means and variances from the respective means and variances of the actually-sampled prior distributions. The effect of a disparity in form between the assigned prior and actually-sampled distributions was less important for the cases tested.     

Bayesian meta-analysis of correlation coefficients through power prior

This article proposes a Bayesian approach for meta-analysis of correlation coefficients through power prior. The primary purpose of this method is to allow meta-analytic researchers to evaluate the contribution and influence of each individual study to the estimated overall effect size though power prior. We use the relationship between high-performance work systems and financial performance as an example to illustrate how to apply this method. We also introduce free online software that can be used to conduct Bayesian meta-analysis proposed in this study. Implications and future directions are also discussed in this article.     

Bayesian inference for contingency tables with given marginals

Summary In this paper we introduce a class of prior distributions for contingency tables with given marginals. We are interested in the structrre of concordance/discordance of such tables. There is actually a minor limitation in that the marginals are required to assume only rational values. We do argue, though, that this is not a serious drawback for all applicatory purposes. The posterior and predictive distributions given anM-sample are computed. Examples of Bayesian estimates of some classical indices of concordance are also given. Moreover, we show how to use simulation in order to overcome some difficulties which arise in the computation of the posterior distribution.     

Bayesian estimation for first-order autoregressive model with explanatory variables

In this article, we develop a Bayesian analysis in autoregressive model with explanatory variables. When σ² is known, we consider a normal prior and give the Bayesian estimator for the regression coefficients of the model. For the case σ² is unknown, another Bayesian estimator is given for all unknown parameters under a conjugate prior. Bayesian model selection problem is also being considered under the double-exponential priors. By the convergence of ρ-mixing sequence, the consistency and asymptotic normality of the Bayesian estimators of the regression coefficients are proved. Simulation results indicate that our Bayesian estimators are not strongly dependent on the priors, and are robust.     

Bayesian inference with misspecified models

This article reviews Bayesian inference from the perspective that the designated model is misspecified. This misspecification has implications in interpretation of objects, such as the prior distribution, which has been the cause of recent questioning of the appropriateness of Bayesian inference in this scenario. The main focus of this article is to establish the suitability of applying the Bayes update to a misspecified model, and relies on representation theorems for sequences of symmetric distributions; the identification of parameter values of interest; and the construction of sequences of distributions which act as the guesses as to where the next observation is coming from. A conclusion is that a clear identification of the fundamental starting point for the Bayesian is described.     

Semiparametric Bayesian inference for regression models

This paper presents a method for Bayesian inference for the regression parameters in a linear model with independent and identically distributed errors that does not require the specification of a parametric family of densities for the error distribution. This method first selects a nonparametric kernel density estimate of the error distribution which is unimodal and based on the least-squares residuals. Once the error distribution is selected, the Metropolis algorithm is used to obtain the marginal posterior distribution of the regression parameters. The methodology is illustrated with data sets, and its performance relative to standard Bayesian techniques is evaluated using simulation results.     

Bayesian sequential inference for nonlinear multivariate diffusions

In this paper, we adapt recently developed simulation-based sequential algorithms to the problem concerning the Bayesian analysis of discretely observed diffusion processes. The estimation framework involves the introduction of m−1 latent data points between every pair of observations. Sequential MCMC methods are then used to sample the posterior distribution of the latent data and the model parameters on-line. The method is applied to the estimation of parameters in a simple stochastic volatility model (SV) of the U.S. short-term interest rate. We also provide a simulation study to validate our method, using synthetic data generated by the SV model with parameters calibrated to match weekly observations of the U.S. short-term interest rate.     

Bayesian inference for a flexible class of bivariate beta distributions

Several bivariate beta distributions have been proposed in the literature. In particular, Olkin and Liu [A bivariate beta distribution. Statist Probab Lett. 2003;62(4):407–412] proposed a 3 parameter bivariate beta model which Arnold and Ng [Flexible bivariate beta distributions. J Multivariate Anal. 2011;102(8):1194–1202] extend to 5 and 8 parameter models. The 3 parameter model allows for only positive correlation, while the latter models can accommodate both positive and negative correlation. However, these come at the expense of a density that is mathematically intractable. The focus of this research is on Bayesian estimation for the 5 and 8 parameter models. Since the likelihood does not exist in closed form, we apply approximate Bayesian computation, a likelihood free approach. Simulation studies have been carried out for the 5 and 8 parameter cases under various priors and tolerance levels. We apply the 5 parameter model to a real data set by allowing the model to serve as a prior to correlated proportions of a bivariate beta binomial model. Results and comparisons are then discussed.     

Bayesian inference of asymmetric stochastic conditional duration models

This paper extends stochastic conditional duration (SCD) models for financial transaction data to allow for correlation between error processes and innovations of observed duration process and latent log duration process. Suitable algorithms of Markov Chain Monte Carlo (MCMC) are developed to fit the resulting SCD models under various distributional assumptions about the innovation of the measurement equation. Unlike the estimation methods commonly used to estimate the SCD models in the literature, we work with the original specification of the model, without subjecting the observation equation to a logarithmic transformation. Results of simulation studies suggest that our proposed models and corresponding estimation methodology perform quite well. We also apply an auxiliary particle filter technique to construct one-step-ahead in-sample and out-of-sample duration forecasts of the fitted models. Applications to the IBM transaction data allow comparison of our models and methods to those existing in the literature.     

A nonparametric Bayesian model for inference in related longitudinal studies

Summary.  We discuss a method for combining different but related longitudinal studies to improve predictive precision. The motivation is to borrow strength across clinical studies in which the same measurements are collected at different frequencies. Key features of the data are heterogeneous populations and an unbalanced design across three studies of interest. The first two studies are phase I studies with very detailed observations on a relatively small number of patients. The third study is a large phase III study with over 1500 enrolled patients, but with relatively few measurements on each patient. Patients receive different doses of several drugs in the studies, with the phase III study containing significantly less toxic treatments. Thus, the main challenges for the analysis are to accommodate heterogeneous population distributions and to formalize borrowing strength across the studies and across the various treatment levels. We describe a hierarchical extension over suitable semiparametric longitudinal data models to achieve the inferential goal. A nonparametric random-effects model accommodates the heterogeneity of the population of patients. A hierarchical extension allows borrowing strength across different studies and different levels of treatment by introducing dependence across these nonparametric random-effects distributions. Dependence is introduced by building an analysis of variance (ANOVA) like structure over the random-effects distributions for different studies and treatment combinations. Model structure and parameter interpretation are similar to standard ANOVA models. Instead of the unknown normal means as in standard ANOVA models, however, the basic objects of inference are random distributions, namely the unknown population distributions under each study. The analysis is based on a mixture of Dirichlet processes model as the underlying semiparametric model.