A new continuous distribution on the unit interval applied to modelling the points ratio of football teams

We introduce a new flexible distribution to deal with variables on the unit interval based on a transformation of the sinh–arcsinh distribution, which accommodates different degrees of skewness and kurtosis and becomes an interesting alternative to model this type of data. We also include this new distribution into the generalised additive models for location, scale and shape (GAMLSS) framework in order to develop and fit its regression model. For different parameter settings, some simulations are performed to investigate the behaviour of the estimators. The potentiality of the new regression model is illustrated by means of a real dataset related to the points rate of football teams at the end of a championship from the four most important leagues in the world: Barclays Premier League (England), Bundesliga (Germany), Serie A (Italy) and BBVA league (Spain) during three seasons (2011–2012, 2012–2013 and 2013–2014).     

Bayesian hierarchical models for the prediction of volleyball results

Statistical modelling of sports data has become more and more popular in the recent years and different types of models have been proposed to achieve a variety of objectives: from identifying the key characteristics which lead a team to win or lose to predicting the outcome of a game or the team rankings in national leagues. Although not as popular as football or basketball, volleyball is a team sport with both national and international level competitions in almost every country. However, there is almost no study investigating the prediction of volleyball game outcomes and team rankings in national leagues. We propose a Bayesian hierarchical model for the prediction of the rankings of volleyball national teams, which also allows to estimate the results of each match in the league. We consider two alternative model specifications of different complexity which are validated using data from the women''s volleyball Italian Serie A1 2017–2018 season.     

Default Bayesian analysis of the Behrens–Fisher problem

In the Bayesian approach, the Behrens–Fisher problem has been posed as one of estimation for the difference of two means. No Bayesian solution to the Behrens–Fisher testing problem has yet been given due, perhaps, to the fact that the conventional priors used are improper. While default Bayesian analysis can be carried out for estimation purposes, it poses difficulties for testing problems. This paper generates sensible intrinsic and fractional prior distributions for the Behrens–Fisher testing problem from the improper priors commonly used for estimation. It allows us to compute the Bayes factor to compare the null and the alternative hypotheses. This default procedure of model selection is compared with a frequentist test and the Bayesian information criterion. We find discrepancy in the sense that frequentist and Bayesian information criterion reject the null hypothesis for data, that the Bayes factor for intrinsic or fractional priors do not.     

Bayesian estimation of logistic regression with misclassified covariates and response

Measurement error is a commonly addressed problem in psychometrics and the behavioral sciences, particularly where gold standard data either does not exist or are too expensive. The Bayesian approach can be utilized to adjust for the bias that results from measurement error in tests. Bayesian methods offer other practical advantages for the analysis of epidemiological data including the possibility of incorporating relevant prior scientific information and the ability to make inferences that do not rely on large sample assumptions. In this paper we consider a logistic regression model where both the response and a binary covariate are subject to misclassification. We assume both a continuous measure and a binary diagnostic test are available for the response variable but no gold standard test is assumed available. We consider a fully Bayesian analysis that affords such adjustments, accounting for the sources of error and correcting estimates of the regression parameters. Based on the results from our example and simulations, the models that account for misclassification produce more statistically significant results, than the models that ignore misclassification. A real data example on math disorders is considered.     

A Bayesian Hierarchical Model for Multiple Comparisons in Mixed Models

We propose a Bayesian hierarchical model for multiple comparisons in mixed models where the repeated measures on subjects are described with the subject random effects. The model facilitates inferences in parameterizing the successive differences of the population means, and for them, we choose independent prior distributions that are mixtures of a normal distribution and a discrete distribution with its entire mass at zero. For the other parameters, we choose conjugate or vague priors. The performance of the proposed hierarchical model is investigated in the simulated and two real data sets, and the results illustrate that the proposed hierarchical model can effectively conduct a global test and pairwise comparisons using the posterior probability that any two means are equal. A simulation study is performed to analyze the type I error rate, the familywise error rate, and the test power. The Gibbs sampler procedure is used to estimate the parameters and to calculate the posterior probabilities.     

Testing a linear ARMA model against threshold-ARMA models: A Bayesian approach

We introduce a Bayesian approach to test linear autoregressive moving-average (ARMA) models against threshold autoregressive moving-average (TARMA) models. First, the marginal posterior densities of all parameters, including the threshold and delay, of a TARMA model are obtained by using Gibbs sampler with Metropolis–Hastings algorithm. Second, reversible-jump Markov chain Monte Carlo (RJMCMC) method is adopted to calculate the posterior probabilities for ARMA and TARMA models: Posterior evidence in favor of TARMA models indicates threshold nonlinearity. Finally, based on RJMCMC scheme and Akaike information criterion (AIC) or Bayesian information criterion (BIC), the procedure for modeling TARMA models is exploited. Simulation experiments and a real data example show that our method works well for distinguishing an ARMA from a TARMA model and for building TARMA models.     

A spatial analysis of health and pharmaceutical firm survival

The presence of knowledge spillovers and shared human capital is at the heart of the Marhall–Arrow–Romer externalities hypothesis. Most of the earlier empirical contributions on knowledge externalities; however, considered data aggregated at a regional level so that conclusions are based on the arbitrary definition of jurisdictional spatial units: this is the essence of the so-called modifiable areal unit problem. A second limitation of these studies is constituted by the fact that, somewhat surprisingly, while concentrating on the effects of agglomeration on firm creation and growth, the literature has, conversely, largely ignored its effects on firm survival. The present paper aims at contributing to the existing literature by answering to some of the open methodological questions reconciling the literature of Cox proportional hazards model with that on point pattern and thus capturing the true nature of spatial information. We also present some empirical results based on Italian firm demography data collected and managed by the Italian National Institute of Statistics (ISTAT).     

Novel nomogram based on risk factors of chronic obstructive pulmonary disease (COPD) using a naïve Bayesian classifier model

In this paper, we identified risk factors for chronic obstructive pulmonary disease (COPD) and proposed a nomogram for COPD. Data were from the 6th Korean National Health and Nutrition Examination Survey (2013–2015). First, a chi-square test was performed to identify risk factors about incidence of COPD. A nomogram was then constructed using the naïve Bayesian classifier model in order to visualize risk factors of COPD. The nomogram shows that asthma had the strongest effect on COPD incidence. We additionally compared Bayesian nomogram with logistic regression model nomogram. Finally, a ROC curve and calibration plot were used to assess the nomogram.     

Forward Simulation Markov Chain Monte Carlo with Applications to Stochastic Epidemic Models

For many stochastic models, it is difficult to make inference about the model parameters because it is impossible to write down a tractable likelihood given the observed data. A common solution is data augmentation in a Markov chain Monte Carlo (MCMC) framework. However, there are statistical problems where this approach has proved infeasible but where simulation from the model is straightforward leading to the popularity of the approximate Bayesian computation algorithm. We introduce a forward simulation MCMC (fsMCMC) algorithm, which is primarily based upon simulation from the model. The fsMCMC algorithm formulates the simulation of the process explicitly as a data augmentation problem. By exploiting non‐centred parameterizations, an efficient MCMC updating schema for the parameters and augmented data is introduced, whilst maintaining straightforward simulation from the model. The fsMCMC algorithm is successfully applied to two distinct epidemic models including a birth–death–mutation model that has only previously been analysed using approximate Bayesian computation methods.     

Bayesian two-stage optimal design for mixture models

In this paper, a Bayesian two-stage D–D optimal design for mixture experimental models under model uncertainty is developed. A Bayesian D-optimality criterion is used in the first stage to minimize the determinant of the posterior variances of the parameters. The second stage design is then generated according to an optimalityprocedure that collaborates with the improved model from the first stage data. The results show that a Bayesian two-stage D–D-optimal design for mixture experiments under model uncertainty is more efficient than both the Bayesian one-stage D-optimal design and the non-Bayesian one-stage D-optimal design in most situations. Furthermore, simulations are used to obtain a reasonable ratio of the sample sizes between the two stages.     

A practical approach for assessing the effect of grouping in hierarchical spatio-temporal models

Hierarchical spatio-temporal models allow for the consideration and estimation of many sources of variability. A general spatio-temporal model can be written as the sum of a spatio-temporal trend and a spatio-temporal random effect. When spatial locations are considered to be homogeneous with respect to some exogenous features, the groups of locations may share a common spatial domain. Differences between groups can be highlighted both in the large-scale, spatio-temporal component and in the spatio-temporal dependence structure. When these differences are not included in the model specification, model performance and spatio-temporal predictions may be weak. This paper proposes a method for evaluating and comparing models that progressively include group differences. Hierarchical modeling under a Bayesian perspective is followed, allowing flexible models and the statistical assessment of results based on posterior predictive distributions. This procedure is applied to tropospheric ozone data in the Italian Emilia–Romagna region for 2001, where 30 monitoring sites are classified according to environmental laws into two groups by their relative position with respect to traffic emissions.     

Markov random-field models for estimating local labour markets

Summary. This work is motivated by data on daily travel-to-work flows observed between pairs of elemental territorial units of an Italian region. The data were collected during the 1991 population census. The aim of the analysis is to partition the region into local labour markets. We present a new method for this which is inspired by the Bayesian texture segmentation approach. We introduce a novel Markov random-field model for the distribution of the variables that label the local labour markets for each territorial unit. Inference is performed by means of Markov chain Monte Carlo methods. The issue of model hyperparameter estimation is also addressed. We compare the results with those obtained by applying a classical method. The methodology can be applied with minor modifications to other data sets.     

A flexible Bayesian non-parametric approach for fitting the odds to case II interval-censored data

Interval-censored survival data arise often in medical applications and clinical trials [Wang L, Sun J, Tong X. Regression analyis of case II interval-censored failure time data with the additive hazards model. Statistica Sinica. 2010;20:1709–1723]. However, most of existing interval-censored survival analysis techniques suffer from challenges such as heavy computational cost or non-proportionality of hazard rates due to complicated data structure [Wang L, Lin X. A Bayesian approach for analyzing case 2 interval-censored data under the semiparametric proportional odds model. Statistics & Probability Letters. 2011;81:876–883; Banerjee T, Chen M-H, Dey DK, et al. Bayesian analysis of generalized odds-rate hazards models for survival data. Lifetime Data Analysis. 2007;13:241–260]. To address these challenges, in this paper, we introduce a flexible Bayesian non-parametric procedure for the estimation of the odds under interval censoring, case II. We use Bernstein polynomials to introduce a prior for modeling the odds and propose a novel and easy-to-implement sampling manner based on the Markov chain Monte Carlo algorithms to study the posterior distributions. We also give general results on asymptotic properties of the posterior distributions. The simulated examples show that the proposed approach is quite satisfactory in the cases considered. The use of the proposed method is further illustrated by analyzing the hemophilia study data [McMahan CS, Wang L. A package for semiparametric regression analysis of interval-censored data; 2015. http://CRAN.R-project.org/package=ICsurv.     

Bayesian goodness-of-fit test for censored data

We propose a Bayesian computation and inference method for the Pearson-type chi-squared goodness-of-fit test with right-censored survival data. Our test statistic is derived from the classical Pearson chi-squared test using the differences between the observed and expected counts in the partitioned bins. In the Bayesian paradigm, we generate posterior samples of the model parameter using the Markov chain Monte Carlo procedure. By replacing the maximum likelihood estimator in the quadratic form with a random observation from the posterior distribution of the model parameter, we can easily construct a chi-squared test statistic. The degrees of freedom of the test equal the number of bins and thus is independent of the dimensionality of the underlying parameter vector. The test statistic recovers the conventional Pearson-type chi-squared structure. Moreover, the proposed algorithm circumvents the burden of evaluating the Fisher information matrix, its inverse and the rank of the variance–covariance matrix. We examine the proposed model diagnostic method using simulation studies and illustrate it with a real data set from a prostate cancer study.     

Bayesian local influence for survival models

The aim of this paper is to develop a Bayesian local influence method (Zhu et al. 2009, submitted) for assessing minor perturbations to the prior, the sampling distribution, and individual observations in survival analysis. We introduce a perturbation model to characterize simultaneous (or individual) perturbations to the data, the prior distribution, and the sampling distribution. We construct a Bayesian perturbation manifold to the perturbation model and calculate its associated geometric quantities including the metric tensor to characterize the intrinsic structure of the perturbation model (or perturbation scheme). We develop local influence measures based on several objective functions to quantify the degree of various perturbations to statistical models. We carry out several simulation studies and analyze two real data sets to illustrate our Bayesian local influence method in detecting influential observations, and for characterizing the sensitivity to the prior distribution and hazard function.     

Reanalyzing Ultimatum Bargaining—Comparing Nondecreasing Curves Without Shape Constraints

We employ a hierarchical Bayesian method with exchangeable prior distributions to estimate and compare similar nondecreasing response curves. A Dirichlet process distribution is assigned to each of the response curves as a first stage prior. A second stage prior is then used to model the hyperparameters. We define parameters which will be used to compare the response curves. A Markov chain Monte Carlo method is applied to compute the resulting Bayesian estimates. To illustrate the methodology, we re-examine data from an experiment designed to test whether experimenter observation influences the ultimatum game. A major restriction of the original analysis was the shape constraint that the present technique allows us to greatly relax. We also consider independent priors and use Bayes factors to compare various models.     

A random effects model for diseases with heterogeneous rates of infection

One form of data collected in the study of infectious diseases is on the transmission of a disease within households. We consider a model which allows the rate of disease transmission to vary between households. A Bayesian hierarchical approach to fitting the model is proposed and is implemented by the Metropolis–Hastings algorithm, a standard Markov chain Monte Carlo (MCMC) method. Results are presented for both simulated epidemic chain data and the Providence measles data, illustrating the potential that MCMC methods have to dealing with heterogeneity in infectious disease transmission.     

Random number generation and estimation with the bimodal asymmetric power-normal distribution

Recently, Bolfarine et al. [Bimodal symmetric-asymmetric power-normal families. Commun Statist Theory Methods. Forthcoming. doi:10.1080/03610926.2013.765475] introduced a bimodal asymmetric model having the normal and skew normal as special cases. Here, we prove a stochastic representation for their bimodal asymmetric model and use it to generate random numbers from that model. It is shown how the resulting algorithm can be seen as an improvement over the rejection method. We also discuss practical and numerical aspects regarding the estimation of the model parameters by maximum likelihood under simple random sampling. We show that a unique stationary point of the likelihood equations exists except when all observations have the same sign. However, the location-scale extension of the model usually presents two or more roots and this fact is illustrated here. The standard maximization routines available in the R system (Broyden–Fletcher–Goldfarb–Shanno (BFGS), Trust, Nelder–Mead) were considered in our implementations but exhibited similar performance. We show the usefulness of inspecting profile loglikelihoods as a method to obtain starting values for maximization and illustrate data analysis with the location-scale model in the presence of multiple roots. A simple Bayesian model is discussed in the context of a data set which presents a flat likelihood in the direction of the skewness parameter.     

A Bayesian test of homogeneity of association parameter using transition modelling of longitudinal mixed responses

In this paper, a Bayesian framework using a joint transition model for analysing longitudinal mixed ordinal and continuous responses is considered. The joint model considers a multivariate mixed model for the responses in which a transitive cumulative logistic regression model and an autoregressive regression model are used to model ordinal and continuous responses, respectively. Also, to take into account the association between longitudinal ordinal and continuous responses, a dynamic association parameter is used. A test is conducted to see whether this parameter is time-invariant and another test is presented to see whether this parameter is equal to zero or significantly far from zero. Our approach is applied to longitudinal PIAT (Peabody Individual Achievement Test) data where the Bayesian estimates of parameters are obtained.     

Scale mixtures log-Birnbaum–Saunders regression models with censored data: a Bayesian approach

The main objective of this paper is to develop a full Bayesian analysis for the Birnbaum–Saunders (BS) regression model based on scale mixtures of the normal (SMN) distribution with right-censored survival data. The BS distributions based on SMN models are a very general approach for analysing lifetime data, which has as special cases the Student-t-BS, slash-BS and the contaminated normal-BS distributions, being a flexible alternative to the use of the corresponding BS distribution or any other well-known compatible model, such as the log-normal distribution. A Gibbs sample algorithm with Metropolis–Hastings algorithm is used to obtain the Bayesian estimates of the parameters. Moreover, some discussions on the model selection to compare the fitted models are given and case-deletion influence diagnostics are developed for the joint posterior distribution based on the Kullback–Leibler divergence. The newly developed procedures are illustrated on a real data set previously analysed under BS regression models.