Random-intercept misspecification in generalized linear mixed models for binary responses

We study properties of maximum likelihood estimators of parameters in generalized linear mixed models for a binary response in the presence of random-intercept model misspecification. Further exploiting the test proposed in an existing work initially designed for detecting general random-effects misspecification, we are able to reveal how the true random-intercept distribution deviates from the assumed. Besides this advance compared to the existing methods, we also provide theoretical insights on when and why the proposed test has low power to identify certain forms of misspecification. Large-sample numerical study and finite-sample simulation experiments are carried out to illustrate the theoretical findings.     

On the analysis of unbalanced two-level supersaturated designs via generalized linear models

Supersaturated designs (SSDs) are factorial designs in which the number of experimental runs is smaller than the number of parameters to be estimated in the model. While most of the literature on SSDs has focused on balanced designs, the construction and analysis of unbalanced designs has not been developed to a great extent. Recent studies discuss the possible advantages of relaxing the balance requirement in construction or data analysis of SSDs, and that unbalanced designs compare favorably to balanced designs for several optimality criteria and for the way in which the data are analyzed. Moreover, the effect analysis framework of unbalanced SSDs until now is restricted to the central assumption that experimental data come from a linear model. In this article, we consider unbalanced SSDs for data analysis under the assumption of generalized linear models (GLMs), revealing that unbalanced SSDs perform well despite the unbalance property. The examination of Type I and Type II error rates through an extensive simulation study indicates that the proposed method works satisfactorily.     

Prior distribution elicitation for generalized linear and piecewise-linear models

An elicitation method is proposed for quantifying subjective opinion about the regression coefficients of a generalized linear model. Opinion between a continuous predictor variable and the dependent variable is modelled by a piecewise-linear function, giving a flexible model that can represent a wide variety of opinion. To quantify his or her opinions, the expert uses an interactive computer program, performing assessment tasks that involve drawing graphs and bar-charts to specify medians and other quantiles. Opinion about the regression coefficients is represented by a multivariate normal distribution whose parameters are determined from the assessments. It is practical to use the procedure with models containing a large number of parameters. This is illustrated through practical examples and the benefit from using prior knowledge is examined through cross-validation.     

Improved wrong-model inference for generalized linear models for binary responses in the presence of link misspecification

Statistical Methods & Applications - In the framework of generalized linear models for binary responses, we develop parametric methods that yield estimators for regression coefficients less...     

Empirical likelihood for generalized linear models with missing responses

The paper uses the empirical likelihood method to study the construction of confidence intervals and regions for regression coefficients and response mean in generalized linear models with missing response. By using the inverse selection probability weighted imputation technique, the proposed empirical likelihood ratios are asymptotically chi-squared. Our approach is to directly calibrate the empirical likelihood ratio, which is called as a bias-correction method. Also, a class of estimators for the parameters of interest is constructed, and the asymptotic distributions of the proposed estimators are obtained. A simulation study indicates that the proposed methods are comparable in terms of coverage probabilities and average lengths/areas of confidence intervals/regions. An example of a real data set is used for illustrating our methods.     

Fraction of design space plots for generalized linear models

The use of graphical methods for comparing the quality of prediction throughout the design space of an experiment has been explored extensively for responses modeled with standard linear models. In this paper, fraction of design space (FDS) plots are adapted to evaluate designs for generalized linear models (GLMs). Since the quality of designs for GLMs depends on the model parameters, initial parameter estimates need to be provided by the experimenter. Consequently, an important question to consider is the design's robustness to user misspecification of the initial parameter estimates. FDS plots provide a graphical way of assessing the relative merits of different designs under a variety of types of parameter misspecification. Examples using logistic and Poisson regression models with their canonical links are used to demonstrate the benefits of the FDS plots.     

Prior specification for binary Markov mesh models

Statistics and Computing - We propose prior distributions for all parts of the specification of a Markov mesh model. In the formulation, we define priors for the sequential neighborhood, for the...     

Goodness-of-fit tests of generalized linear mixed models for repeated ordinal responses

Categorical longitudinal data are frequently applied in a variety of fields, and are commonly fitted by generalized linear mixed models (GLMMs) and generalized estimating equations models. The cumulative logit is one of the useful link functions to deal with the problem involving repeated ordinal responses. To check the adequacy of the GLMMs with cumulative logit link function, two goodness-of-fit tests constructed by the unweighted sum of squared model residuals using numerical integration and bootstrap resampling technique are proposed. The empirical type I error rates and powers of the proposed tests are examined by simulation studies. The ordinal longitudinal studies are utilized to illustrate the application of the two proposed tests.     

Optimal design in average for inference in generalized linear models

This paper considers the problem of optimal design for inference in Generalized Linear Models, when prior information about the parameters is available. The general theory of optimum design usually requires knowledge of the parameter values. These are usually unknown and optimal design can, therefore, not be used in practice. However, one way to circumvent this problem is through so-called “optimal design in average”, or shortly, “ave optimal”. The ave optimal design is chosen to minimize the expected value of some criterion function over a prior distribution. We focus our interest on the aveD _A-optimality, including aveD- and avec-optimality and show the appropriate equivalence theorems for these optimality criterions, which give necessary conditions for an optimal design. Ave optimal designs are of interest when e.g. a factorial experiment with a binary or a Poisson response in to be conducted. The results are applied to factorial experiments, including a control group experiment and a 2×2 experiment.     

A Monte Carlo-based pseudo-coefficient of determination for generalized linear models with binary outcome

In this article, we focus on a pseudo-coefficient of determination for generalized linear models with binary outcome. Although there are numerous coefficients of determination proposed in the literature, none of them is identified as the best in terms of estimation accuracy, or incorporates all desired characteristics of a precise coefficient of determination. Considering this, we propose a new coefficient of determination by using a computational Monte Carlo approach, and exhibit main characteristics of the proposed coefficient of determination both analytically and numerically. We evaluate and compare performances of the proposed and nine existing coefficients of determination by a comprehensive Monte Carlo simulation study. The proposed measure is found superior to the existent measures when dependent variable is balanced or moderately unbalanced for probit, logit, and complementary log–log link functions and a wide range of sample sizes. Due to the extensive design space of our simulation study, we identify new conditions in which previously recommended coefficients of determination should be used carefully.     

Bootstrap for generalized linear models

We consider the distribution of the (standardized) ML-estimator of the unknown parameter vector in a Generalized Linear Model with canonical link function. It will be shown that its (parametric) Bootstrap estimator is consistent under the same assumptions needed by Fahrmeir & Kaufmann (1985, 1986) to show its asymptotic normality.     

Prediction for generalized linear models

Regression models are often used to make predictions. All the information needed is contained in the predictive distribution. However, this cannot be evaluated explicitly for most generalized linear models. We construct two approximations to this distribution and demonstrate their use on two sets of survival data, corresponding to the outcome of patients admitted to intensive care units and the survival times of leukaemia patients.Regression models are often used to make predictions. All the information needed is contained in the predictive distribution. However, this cannot be evaluated explicitly for most generalized linear models. We construct two approximations to this distribution and demonstrate their use on two sets of survival data, corresponding to the outcome of patients admitted to intensive care units and the survival times of leukaemia patients.Regression models are often used to make predictions. All the information needed is contained in the predictive distribution. However, this cannot be evaluated explicitly for most generalized linear models. We construct two approximations to this distribution and demonstrate their use on two sets of survival data, corresponding to the outcome of patients admitted to intensive care units and the survival times of leukaemia patients.Regression models are often used to make predictions. All the information needed is contained in the predictive distribution. However, this cannot be evaluated explicitly for most generalized linear models. We construct two approximations to this distribution and demonstrate their use on two sets of survival data, corresponding to the outcome of patients admitted to intensive care units and the survival times of leukaemia patients.     

Analysis of accelerated life tests with weibull failure distribution via generalized linear models

Efficient industrial experiments for reliability analysis of manufactured goods may consist in subjecting the units to higher stress levels than those of the usual working conditions. This results in the so called "accelerated life tests" where, for each pre-fixed stress level, the experiment ends after the failure of a certain pre-fixed proportion of units or a certain test time is reached. The aim of this paper is to determine estimates of the mean lifetime of the units under usual working conditions from censored failure data obtained under stress conditions. This problem is approached through generalized linear modelling and related inferential techniques, considering a Weibull failure distribution and a log-linear stress-response relationship. The general framework considered has as particular cases, the Inverse Power Law model, the Eyring model, the Arrhenius model and the generalized Eyring model. In order to illustrate the proposed methodology, a numerical example is provided.     

Testing for linearity in generalized linear models using kernel smoothing

A test statistic proposed by Li (1999) for testing the adequacy of heteroscedastic nonlinear regression models using nonparametric kernel smoothers is applied to testing for linearity in generalized linear models. Simulation results for models with centered gamma and inverse Gaussian errors are presented to illustrate the performance of the resulting test compared with log-likelihood ratio tests for specific parametric alternatives. The test is applied to a data set of coronary heart disease status (Hosmer and Lemeshow, (1990).     

Analysis of generalized linear mixed models via a stochastic approximation algorithm with Markov chain Monte-Carlo method

In recent years much effort has been devoted to maximum likelihood estimation of generalized linear mixed models. Most of the existing methods use the EM algorithm, with various techniques in handling the intractable E-step. In this paper, a new implementation of a stochastic approximation algorithm with Markov chain Monte Carlo method is investigated. The proposed algorithm is computationally straightforward and its convergence is guaranteed. A simulation and three real data sets, including the challenging salamander data, are used to illustrate the procedure and to compare it with some existing methods. The results indicate that the proposed algorithm is an attractive alternative for problems with a large number of random effects or with high dimensional intractable integrals in the likelihood function.     

Optimal designs for generalized linear models

Summary This paper solves some D-optimal design problems for certain Generalized Linear Models where the mean depends on two parameters and two explanatory variables. In all of the cases considered the support point of the optimal designs are found to be independent of the unknown parameters. While in some cases the optimal design measures are given by two points with equal weights, in others the support is given by three point with weights depending on the unknown parameters, hence the designs are locally optimal in general. Empirical results on the efficiency of the locally optimal designs are also given. Some of the designs found can also be used for planning D-optimal experiments for the normal linear model, where the mean must be positive. This research was carried out in part at University College, London as an M.Sc. project. Thanks are due to Prof. I. Ford (University of Glasgow) and Prof. A. Giovagnoli (University of Perugia) for their valuable suggestions and critical observations.     

Splice plots for generalized linear models

ABSTRACT

We develop splice plots as a diagnostic tool for parametric generalized linear models. Splice plots use the independence of the outcome and explanatory measures given the regression function. Plotting differences between the estimated parametric regression function and non-parametric estimates of the regression function computed in small neighborhoods of the fitted values from the parametric model can be used to assess model fit.     

A unified approach to estimating association measures via a joint generalized linear model for paired binary data

Paired binary data arise frequently in biomedical studies with unique features of their own. For instance, in clinical studies involving pairs such as ears, eyes etc., often both the intrapair association parameter and the event probability are of interest. In addition, we may be interested in the dependence of the association parameter on certain covariates as well. Although various methods have been proposed to model paired binary data, this paper proposes a unified approach for estimating various intrapair measures under a generalized linear model with simultaneous maximum likelihood estimates of the marginal probabilities and the intrapair association. The methods are illustrated with a twin morbidity study.