Likelihood estimation for longitudinal zero-inflated power series regression models

In this paper, a zero-inflated power series regression model for longitudinal count data with excess zeros is presented. We demonstrate how to calculate the likelihood for such data when it is assumed that the increment in the cumulative total follows a discrete distribution with a location parameter that depends on a linear function of explanatory variables. Simulation studies indicate that this method can provide improvements in obtaining standard errors of the estimates. We also calculate the dispersion index for this model. The influence of a small perturbation of the dispersion index of the zero-inflated model on likelihood displacement is also studied. The zero-inflated negative binomial regression model is illustrated on data regarding joint damage in psoriatic arthritis.     

Robust regression: an inferential method for determining which independent variables are most important

Consider the usual linear regression model consisting of two or more explanatory variables. There are many methods aimed at indicating the relative importance of the explanatory variables. But in general these methods do not address a fundamental issue: when all of the explanatory variables are included in the model, how strong is the empirical evidence that the first explanatory variable is more or less important than the second explanatory variable? How strong is the empirical evidence that the first two explanatory variables are more important than the third explanatory variable? The paper suggests a robust method for dealing with these issues. The proposed technique is based on a particular version of explanatory power used in conjunction with a modification of the basic percentile method.     

High dimensional variable selection with clustered data: an application of random multivariate survival forests for detection of outlier medical device components

In many medical studies patients are nested or clustered within doctor. With many explanatory variables, variable selection with clustered data can be challenging. We propose a method for variable selection based on random forest that addresses clustered data through stratified binary splits. Our motivating example involves the detection orthopedic device components from a large pool of candidates, where each patient belongs to a surgeon. Simulations compare the performance of survival forests grown using the stratified logrank statistic to conventional and robust logrank statistics, as well as a method to select variables using a threshold value based on a variable's empirical null distribution. The stratified logrank test performs superior to conventional and robust methods when data are generated to have cluster-specific effects, and when cluster sizes are sufficiently large, perform comparably to the splitting alternatives in the absence of cluster-specific effects. Thresholding was effective at distinguishing between important and unimportant variables.     

Evaluation of alternative model selection criteria in the analysis of unimodal response curves using CART

We investigated CART performance with a unimodal response curve for one continuous response and four continuous explanatory variables, where two variables were important (i.e. directly related to the response) and the other two were not. We explored performance under three relationship strengths and two explanatory variable conditions: equal importance and one variable four times as important as the other. We compared CART variable selection performance using three tree-selection rules ('minimum risk', 'minimum risk complexity', 'one standard error') to stepwise polynomial ordinary least squares (OLS) under four sample size conditions. The one-standard-error and minimum risk-complexity methods performed about as well as stepwise OLS with large sample sizes when the relationship was strong. With weaker relationships, equally important explanatory variables and larger sample sizes, the one-standard-error and minimum-risk-complexity rules performed better than stepwise OLS. With weaker relationships and explanatory variables of unequal importance, tree-structured methods did not perform as well as stepwise OLS. Comparing performance within tree-structured methods, with a strong relationship and equally important explanatory variables, the one-standard-error rule was more likely to choose the correct model than were the other tree-selection rules. The minimum-risk-complexity rule was more likely to choose the correct model than were the other tree-selection rules (1) with weaker relationships and equally important explanatory variables; and (2) under all relationship strengths when explanatory variables were of unequal importance and sample sizes were lower.     

A Bayesian approach for generalized linear models with explanatory biomarker measurement variables subject to detection limit: an application to acute lung injury

Biomarkers have the potential to improve our understanding of disease diagnosis and prognosis. Biomarker levels that fall below the assay detection limits (DLs), however, compromise the application of biomarkers in research and practice. Most existing methods to handle non-detects focus on a scenario in which the response variable is subject to the DL; only a few methods consider explanatory variables when dealing with DLs. We propose a Bayesian approach for generalized linear models with explanatory variables subject to lower, upper, or interval DLs. In simulation studies, we compared the proposed Bayesian approach to four commonly used methods in a logistic regression model with explanatory variable measurements subject to the DL. We also applied the Bayesian approach and other four methods in a real study, in which a panel of cytokine biomarkers was studied for their association with acute lung injury (ALI). We found that IL8 was associated with a moderate increase in risk for ALI in the model based on the proposed Bayesian approach.     

基于互信息的变量选择方法

文章基于解释变量与被解释变量之间的互信息提出一种新的变量选择方法:MI-SIS。该方法可以处理解释变量数目p远大于观测样本量n的超高维问题,即p=O(exp(nε))ε>0。另外,该方法是一种不依赖于模型假设的变量选择方法。数值模拟和实证研究表明,MI-SIS方法在小样本情形下能够有效地发现微弱信号。     

Joint modeling of longitudinal data with a dependent terminal event

ABSTRACT

Longitudinal data often arise in longitudinal follow-up studies, and there may exist a dependent terminal event such as death that stops the follow-up. In this article, we propose a new joint modeling for the analysis of longitudinal data with informative observation times via a dependent terminal event and two latent variables. Estimating equations are developed for parameter estimation, and asymptotic properties of the resulting estimators are established. In addition, a generalization of the joint model with time-varying coefficients for the longitudinal response variable is considered, and goodness-of-fit methods for assessing the adequacy of the model are also provided. The proposed method works well in our simulation studies, and is applied to a data set from a bladder cancer study.     

On the use of the Box-Cox transformation in a linear regression with a lagged dependent variable

In this paper, we show a maximum likelihood estimation procedure in the Box-Cox model when a lagged dependent variable is included among explanatory variables and the first observation of the dependent variable is random. It is shown in a numerical example that a test of a coefficientof the lagged dependent variable is sensitive to whether the first observation of the dependentvariable is random or not.     

AN APPROACH FOR JOINTLY MODELING MULTIVARIATE LONGITUDINAL MEASUREMENTS AND DISCRETE TIME-TO-EVENT DATA

In many medical studies, patients are followed longitudinally and interest is on assessing the relationship between longitudinal measurements and time to an event. Recently, various authors have proposed joint modeling approaches for longitudinal and time-to-event data for a single longitudinal variable. These joint modeling approaches become intractable with even a few longitudinal variables. In this paper we propose a regression calibration approach for jointly modeling multiple longitudinal measurements and discrete time-to-event data. Ideally, a two-stage modeling approach could be applied in which the multiple longitudinal measurements are modeled in the first stage and the longitudinal model is related to the time-to-event data in the second stage. Biased parameter estimation due to informative dropout makes this direct two-stage modeling approach problematic. We propose a regression calibration approach which appropriately accounts for informative dropout. We approximate the conditional distribution of the multiple longitudinal measurements given the event time by modeling all pairwise combinations of the longitudinal measurements using a bivariate linear mixed model which conditions on the event time. Complete data are then simulated based on estimates from these pairwise conditional models, and regression calibration is used to estimate the relationship between longitudinal data and time-to-event data using the complete data. We show that this approach performs well in estimating the relationship between multivariate longitudinal measurements and the time-to-event data and in estimating the parameters of the multiple longitudinal process subject to informative dropout. We illustrate this methodology with simulations and with an analysis of primary biliary cirrhosis (PBC) data.     

Regression analysis of longitudinal data with outcome‐dependent sampling and informative censoring

We consider a regression analysis of longitudinal data in the presence of outcome‐dependent observation times and informative censoring. Existing approaches commonly require a correct specification of the joint distribution of longitudinal measurements, the observation time process, and informative censoring time under the joint modeling framework and can be computationally cumbersome due to the complex form of the likelihood function. In view of these issues, we propose a semiparametric joint regression model and construct a composite likelihood function based on a conditional order statistics argument. As a major feature of our proposed methods, the aforementioned joint distribution is not required to be specified, and the random effect in the proposed joint model is treated as a nuisance parameter. Consequently, the derived composite likelihood bypasses the need to integrate over the random effect and offers the advantage of easy computation. We show that the resulting estimators are consistent and asymptotically normal. We use simulation studies to evaluate the finite‐sample performance of the proposed method and apply it to a study of weight loss data that motivated our investigation.     

The corrected VIF (CVIF)

In this paper, we propose a new corrected variance inflation factor (VIF) measure to evaluate the impact of the correlation among the explanatory variables in the variance of the ordinary least squares estimators. We show that the real impact on variance can be overestimated by the traditional VIF when the explanatory variables contain no redundant information about the dependent variable and a corrected version of this multicollinearity indicator becomes necessary.     

Modeling a cross-sectional response variable with longitudinal predictors: an example of pulse pressure and pulse wave velocity

We wish to model pulse wave velocity (PWV) as a function of longitudinal measurements of pulse pressure (PP) at the same and prior visits at which the PWV is measured. A number of approaches are compared. First, we use the PP at the same visit as the PWV in a linear regression model. In addition, we use the average of all available PPs as the explanatory variable in a linear regression model. Next, a two-stage process is applied. The longitudinal PP is modeled using a linear mixed-effects model. This modeled PP is used in the regression model to describe PWV. An approach for using the longitudinal PP data is to obtain a measure of the cumulative burden, the area under the PP curve. This area under the curve is used as an explanatory variable to model PWV. Finally, a joint Bayesian model is constructed similar to the two-stage model.     

Modelling non-response in the National Child Development Study

Summary.  There is widespread concern that the cumulative effects of the non-response that is bound to affect any long-running longitudinal study will lead to mistaken inferences about change. We focus on the National Child Development Study and show how non-response has accumulated over time. We distinguish between attrition and wave non-response and show how these two kinds of non-response can be related to a set of explanatory variables. We model the discrete time hazard of non-response and also fit a set of multinomial logistic regressions to the probabilities of different kinds of non-response at a particular sweep. We find that the best predictors of non-response at any sweep are generally variables that are measured at the previous sweep but, although non-response is systematic, much of the variation in it remains unexplained by our models. We consider the implications of our results for both design and analysis.     

Nonparametric Two-Sample Tests of Longitudinal Data with Termination Events

In longitudinal data, observations of response variables occur at fixed or random time points, and can be stopped by a termination event. When comparing longitudinal data for two groups, such irregular observation behavior must be considered to yield suitable results. In this article, we propose the use of nonparametric tests based on the difference between weighted cumulative mean functions for comparing two mean functions with an adjustment for difference in the timing of termination events. We also derive the asymptotic null distributions of the test statistics and examine their small sample properties through simulations. We apply our method to data from a study of liver cirrhosis.     

A note on nonparametric estimation of circular conditional densities

ABSTRACT

The conditional density offers the most informative summary of the relationship between explanatory and response variables. We need to estimate it in place of the simple conditional mean when its shape is not well-behaved. A motivation for estimating conditional densities, specific to the circular setting, lies in the fact that a natural alternative of it, like quantile regression, could be considered problematic because circular quantiles are not rotationally equivariant. We treat conditional density estimation as a local polynomial fitting problem as proposed by Fan et al. [Estimation of conditional densities and sensitivity measures in nonlinear dynamical systems. Biometrika. 1996;83:189–206] in the Euclidean setting, and discuss a class of estimators in the cases when the conditioning variable is either circular or linear. Asymptotic properties for some members of the proposed class are derived. The effectiveness of the methods for finite sample sizes is illustrated by simulation experiments and an example using real data.     

Joint confidence regions in the multivariate calibration problem

Consider a vector valued response variable related to a vector valued explanatory variable through a normal multivariate linear model. The multivariate calibration problem deals with statistical inference on unknown values of the explanatory variable. The problem addressed is the construction of joint confidence regions for several unknown values of the explanatory variable. The problem is investigated when the variance covariance matrix is a scalar multiple of the identity matrix and also when it is a completely unknown positive definite matrix. The problem is solved in only two cases: (i) the response and explanatory variables have the same dimensions, and (ii) the explanatory variable is a scalar. In the former case, exact joint confidence regions are derived based on a natural pivot statistic. In the latter case, the joint confidence regions are only conservative. Computational aspects and the practical implementation of the confidence regions are discussed and illustrated using an example.     

A generalized likelihood ratio test for monitoring profile data

Profile data emerges when the quality of a product or process is characterized by a functional relationship among (input and output) variables. In this paper, we focus on the case where each profile has one response variable Y, one explanatory variable x, and the functional relationship between these two variables can be rather arbitrary. The basic concept can be applied to a much wider case, however. We propose a general method based on the Generalized Likelihood Ratio Test (GLRT) for monitoring of profile data. The proposed method uses nonparametric regression to estimate the on-line profiles and thus does not require any functional form for the profiles. Both Shewhart-type and EWMA-type control charts are considered. The average run length (ARL) performance of the proposed method is studied. It is shown that the proposed GLRT-based control chart can efficiently detect both location and dispersion shifts of the on-line profiles from the baseline profile. An upper control limit (UCL) corresponding to a desired in-control ARL value is constructed.     

A likelihood-based approach for multivariate one-sided tests with missing data

Inequality-restricted hypotheses testing methods containing multivariate one-sided testing methods are useful in practice, especially in multiple comparison problems. In practice, multivariate and longitudinal data often contain missing values since it may be difficult to observe all values for each variable. However, although missing values are common for multivariate data, statistical methods for multivariate one-sided tests with missing values are quite limited. In this article, motivated by a dataset in a recent collaborative project, we develop two likelihood-based methods for multivariate one-sided tests with missing values, where the missing data patterns can be arbitrary and the missing data mechanisms may be non-ignorable. Although non-ignorable missing data are not testable based on observed data, statistical methods addressing this issue can be used for sensitivity analysis and might lead to more reliable results, since ignoring informative missingness may lead to biased analysis. We analyse the real dataset in details under various possible missing data mechanisms and report interesting findings which are previously unavailable. We also derive some asymptotic results and evaluate our new tests using simulations.     

Testing for constancy in varying coefficient models

We consider varying coefficient models, which are an extension of the classical linear regression models in the sense that the regression coefficients are replaced by functions in certain variables (for example, time), the covariates are also allowed to depend on other variables. Varying coefficient models are popular in longitudinal data and panel data studies, and have been applied in fields such as finance and health sciences. We consider longitudinal data and estimate the coefficient functions by the flexible B-spline technique. An important question in a varying coefficient model is whether an estimated coefficient function is statistically different from a constant (or zero). We develop testing procedures based on the estimated B-spline coefficients by making use of nice properties of a B-spline basis. Our method allows longitudinal data where repeated measurements for an individual can be correlated. We obtain the asymptotic null distribution of the test statistic. The power of the proposed testing procedures are illustrated on simulated data where we highlight the importance of including the correlation structure of the response variable and on real data.     

Graphical Techniques for Selecting Explanatory Variables for Time Series Data

Bayesian model building techniques are developed for data with a strong time series structure and possibly exogenous explanatory variables that have strong explanatory and predictive power. The emphasis is on finding whether there are any explanatory variables that might be used for modelling if the data have a strong time series structure that should also be included. We use a time series model that is linear in past observations and that can capture both stochastic and deterministic trend, seasonality and serial correlation. We propose the plotting of absolute predictive error against predictive standard deviation. A series of such plots is utilized to determine which of several nested and non-nested models is optimal in terms of minimizing the dispersion of the predictive distribution and restricting predictive outliers. We apply the techniques to modelling monthly counts of fatal road crashes in Australia where economic, consumption and weather variables are available and we find that three such variables should be included in addition to the time series filter. The approach leads to graphical techniques to determine strengths of relationships between the dependent variable and covariates and to detect model inadequacy as well as determining useful numerical summaries.