A generalization of the compound rayleigh distribution: using a bayesian method on cancer survival times

In this paper the generalized compound Rayleigh model, exhibiting flexible hazard rate, is high¬lighted. This makes it attractive for modelling survival times of patients showing characteristics of a random hazard rate. The Bayes estimators are derived for the parameters of this model and some survival time parameters from a right censored sample. This is done with respect to conjugate and discrete priors on the parameters of this model, under the squared error loss function, Varian's asymmetric linear-exponential (linex) loss function and a weighted linex loss function. The future survival time of a patient is estimated under these loss functions. A Monte Carlo simu¬lation procedure is used where closed form expressions of the estimators cannot be obtained. An example illustrates the proposed estimators for this model.     

Shared frailty models based on reversed hazard rate for modified inverse Weibull distribution as baseline distribution

The unknown or unobservable risk factors in the survival analysis cause heterogeneity between individuals. Frailty models are used in the survival analysis to account for the unobserved heterogeneity in individual risks to disease and death. To analyze the bivariate data on related survival times, the shared frailty models were suggested. The most common shared frailty model is a model in which frailty act multiplicatively on the hazard function. In this paper, we introduce the shared gamma frailty model and the inverse Gaussian frailty model with the reversed hazard rate. We introduce the Bayesian estimation procedure using Markov chain Monte Carlo (MCMC) technique to estimate the parameters involved in the model. We present a simulation study to compare the true values of the parameters with the estimated values. We also apply the proposed models to the Australian twin data set and a better model is suggested.     

A hybrid method to estimate the full parametric hazard model

Abstract

In this paper, we propose a hybrid method to estimate the baseline hazard for Cox proportional hazard model. In the proposed method, the nonparametric estimate of the survival function by Kaplan Meier, and the parametric estimate of the logistic function in the Cox proportional hazard by partial likelihood method are combined to estimate a parametric baseline hazard function. We compare the estimated baseline hazard using the proposed method and the Cox model. The results show that the estimated baseline hazard using hybrid method is improved in comparison with estimated baseline hazard using the Cox model. The performance of each method is measured based on the estimated parameters of the baseline distribution as well as goodness of fit of the model. We have used real data as well as simulation studies to compare performance of both methods. Monte Carlo simulations carried out in order to evaluate the performance of the proposed method. The results show that the proposed hybrid method provided better estimate of the baseline in comparison with the estimated values by the Cox model.     

Gamma shared frailty model based on reversed hazard rate

Abstract

Frailty models are used in survival analysis to account for unobserved heterogeneity in individual risks to disease and death. To analyze bivariate data on related survival times (e.g., matched pairs experiments, twin, or family data), shared frailty models were suggested. Shared frailty models are frequently used to model heterogeneity in survival analysis. The most common shared frailty model is a model in which hazard function is a product of random factor(frailty) and baseline hazard function which is common to all individuals. There are certain assumptions about the baseline distribution and distribution of frailty. In this paper, we introduce shared gamma frailty models with reversed hazard rate. We introduce Bayesian estimation procedure using Markov Chain Monte Carlo (MCMC) technique to estimate the parameters involved in the model. We present a simulation study to compare the true values of the parameters with the estimated values. Also, we apply the proposed model to the Australian twin data set.     

Shared frailty model based on reversed hazard rate for left censored data

Frailty models are used in the survival analysis to account for the unobserved heterogeneity in the individual risks to disease and death. To analyze the bivariate data on related survival times (e.g., matched pairs experiments, twin or family data), the shared frailty models were suggested. In this article, we introduce the shared gamma frailty models with the reversed hazard rate. We develop the Bayesian estimation procedure using the Markov chain Monte Carlo (MCMC) technique to estimate the parameters involved in the model. We present a simulation study to compare the true values of the parameters with the estimated values. We apply the model to a real life bivariate survival dataset.     

Shared gamma frailty models based on reversed hazard rate for modeling Australian twin data

In this paper, we consider shared gamma frailty model with the reversed hazard rate (RHR) with two different baseline distributions, namely the generalized inverse Rayleigh and the exponentiated Gumbel distributions. With these two baseline distributions we propose two different shared frailty models. We develop the Bayesian estimation procedure using Markov Chain Monte Carlo technique to estimate the parameters involved in these models. We present a simulation study to compare the true values of the parameters with the estimated values. A search of the literature suggests that currently no work has been done for these two baseline distributions with a shared gamma frailty with the RHR so far. We also apply these two models by using a real life bivariate survival data set of Australian twin data given by Duffy et a1. (1990) and a better model is suggested for the data.     

A SEMIPARAMETRIC MIXTURE MODEL FOR THE ANALYSIS OF COMPETING RISKS DATA

This paper deals with the regression analysis of failure time data when there are censoring and multiple types of failures. We propose a semiparametric generalization of a parametric mixture model of Larson & Dinse (1985), for which the marginal probabilities of the various failure types are logistic functions of the covariates. Given the type of failure, the conditional distribution of the time to failure follows a proportional hazards model. A marginal like lihood approach to estimating regression parameters is suggested, whereby the baseline hazard functions are eliminated as nuisance parameters. The Monte Carlo method is used to approximate the marginal likelihood; the resulting function is maximized easily using existing software. Some guidelines for choosing the number of Monte Carlo replications are given. Fixing the regression parameters at their estimated values, the full likelihood is maximized via an EM algorithm to estimate the baseline survivor functions. The methods suggested are illustrated using the Stanford heart transplant data.     

Inverse Gaussian Distribution for Modeling Conditional Durations in Finance

The durations between market activities such as trades and quotes provide useful information on the underlying assets while analyzing financial time series. In this article, we propose a stochastic conditional duration model based on the inverse Gaussian distribution. The non-monotonic nature of the failure rate of the inverse Gaussian distribution makes it suitable for modeling the durations in financial time series. The parameters of the proposed model are estimated by an efficient importance sampling method. A simulation experiment is conducted to check the performance of the estimators. These estimates are used to compute estimated hazard functions and to compare with the empirical hazard functions. Finally, a real data analysis is provided to illustrate the practical utility of the models.     

Inference on proportional hazard rate model parameter under Type-I progressively hybrid censoring scheme

ABSTRACT

In this paper, under Type-I progressive hybrid censoring sample, we obtain maximum likelihood estimator of unknown parameter when the parent distribution belongs to proportional hazard rate family. We derive the conditional probability density function of the maximum likelihood estimator using moment-generating function technique. The exact confidence interval is obtained and compared by conducting a Monte Carlo simulation study for burr Type XII distribution. Finally, we obtain the Bayes and posterior regret gamma minimax estimates of the parameter under a precautionary loss function with precautionary index k = 2 and compare their behavior via a Monte Carlo simulation study.     

Parameter and reliability estimation for an exponentiated half-logistic distribution under progressive type II censoring

In this article, we deal with a two-parameter exponentiated half-logistic distribution. We consider the estimation of unknown parameters, the associated reliability function and the hazard rate function under progressive Type II censoring. Maximum likelihood estimates (M LEs) are proposed for unknown quantities. Bayes estimates are derived with respect to squared error, linex and entropy loss functions. Approximate explicit expressions for all Bayes estimates are obtained using the Lindley method. We also use importance sampling scheme to compute the Bayes estimates. Markov Chain Monte Carlo samples are further used to produce credible intervals for the unknown parameters. Asymptotic confidence intervals are constructed using the normality property of the MLEs. For comparison purposes, bootstrap-p and bootstrap-t confidence intervals are also constructed. A comprehensive numerical study is performed to compare the proposed estimates. Finally, a real-life data set is analysed to illustrate the proposed methods of estimation.     

An automated (Markov chain) Monte Carlo EM algorithm

We present an automated Monte Carlo EM (MCEM) algorithm which efficiently assesses Monte Carlo error in the presence of dependent Monte Carlo, particularly Markov chain Monte Carlo, E-step samples and chooses an appropriate Monte Carlo sample size to minimize this Monte Carlo error with respect to progressive EM step estimates. Monte Carlo error is gauged though an application of the central limit theorem during renewal periods of the MCMC sampler used in the E-step. The resulting normal approximation allows us to construct a rigorous and adaptive rule for updating the Monte Carlo sample size each iteration of the MCEM algorithm. We illustrate our automated routine and compare the performance with competing MCEM algorithms in an analysis of a data set fit by a generalized linear mixed model.     

On computing estimates of a change-point in the Weibull regression hazard model

The hazard function describes the instantaneous rate of failure at a time t, given that the individual survives up to t. In applications, the effect of covariates produce changes in the hazard function. When dealing with survival analysis, it is of interest to identify where a change point in time has occurred. In this work, covariates and censored variables are considered in order to estimate a change-point in the Weibull regression hazard model, which is a generalization of the exponential model. For this more general model, it is possible to obtain maximum likelihood estimators for the change-point and for the parameters involved. A Monte Carlo simulation study shows that indeed, it is possible to implement this model in practice. An application with clinical trial data coming from a treatment of chronic granulomatous disease is also included.     

The new Neyman type A generalized odd log-logistic-G-family with cure fraction

The work proposes a new family of survival models called the Odd log-logistic generalized Neyman type A long-term. We consider different activation schemes in which the number of factors M has the Neyman type A distribution and the time of occurrence of an event follows the odd log-logistic generalized family. The parameters are estimated by the classical and Bayesian methods. We investigate the mean estimates, biases, and root mean square errors in different activation schemes using Monte Carlo simulations. The residual analysis via the frequentist approach is used to verify the model assumptions. We illustrate the applicability of the proposed model for patients with gastric adenocarcinoma. The choice of the adenocarcinoma data is because the disease is responsible for most cases of stomach tumors. The estimated cured proportion of patients under chemoradiotherapy is higher compared to patients undergoing only surgery. The estimated hazard function for the chemoradiotherapy level tends to decrease when the time increases. More information about the data is addressed in the application section.     

Estimation of High-Frequency Volatility: An Autoregressive Conditional Duration Approach

We propose a method to estimate the intraday volatility of a stock by integrating the instantaneous conditional return variance per unit time obtained from the autoregressive conditional duration (ACD) model, called the ACD-ICV method. We compare the daily volatility estimated using the ACD-ICV method against several versions of the realized volatility (RV) method, including the bipower variation RV with subsampling, the realized kernel estimate, and the duration-based RV. Our Monte Carlo results show that the ACD-ICV method has lower root mean-squared error than the RV methods in almost all cases considered. This article has online supplementary material.     

Bayesian,MLE, and GMM Estimation of a Spot Rate Model

ABSTRACT

We develop Markov chain Monte Carlo algorithms for estimating the parameters of the short-term interest rate model. Using Monte Carlo experiments we compare the Bayes estimators with the maximum likelihood and generalized method of moments estimators. We estimate the model using the Japanese overnight call rate data.     

Shared frailty models with baseline generalized Pareto distribution

Abstract

In this article, we have considered three different shared frailty models under the assumption of generalized Pareto Distribution as baseline distribution. Frailty models have been used in the survival analysis to account for the unobserved heterogeneity in an individual risks to disease and death. These three frailty models are with gamma frailty, inverse Gaussian frailty and positive stable frailty. Then we introduce the Bayesian estimation procedure using Markov chain Monte Carlo (MCMC) technique to estimate the parameters. We applied these three models to a kidney infection data and find the best fitted model for kidney infection data. We present a simulation study to compare true value of the parameters with the estimated values. Model comparison is made using Bayesian model selection criterion and a well-fitted model is suggested for the kidney infection data.     

Goodness-of-fit test for exponentiality based on spacings for general progressive Type-II censored data

There have been numerous tests proposed to determine whether or not the exponential model is suitable for a given data set. In this article, we propose a new test statistic based on spacings to test whether the general progressive Type-II censored samples are from exponential distribution. The null distribution of the test statistic is discussed and it could be approximated by the standard normal distribution. Meanwhile, we propose an approximate method for calculating the expectation and variance of samples under null hypothesis and corresponding power function is also given. Then, a simulation study is conducted. We calculate the approximation of the power based on normality and compare the results with those obtained by Monte Carlo simulation under different alternatives with distinct types of hazard function. Results of simulation study disclose that the power properties of this statistic by using Monte Carlo simulation are better for the alternatives with monotone increasing hazard function, and otherwise, normal approximation simulation results are relatively better. Finally, two illustrative examples are presented.     

A fast Monte Carlo expectation–maximization algorithm for estimation in latent class model analysis with an application to assess diagnostic accuracy for cervical neoplasia in women with atypical glandular cells

In this article, we use a latent class model (LCM) with prevalence modeled as a function of covariates to assess diagnostic test accuracy in situations where the true disease status is not observed, but observations on three or more conditionally independent diagnostic tests are available. A fast Monte Carlo expectation–maximization (MCEM) algorithm with binary (disease) diagnostic data is implemented to estimate parameters of interest; namely, sensitivity, specificity, and prevalence of the disease as a function of covariates. To obtain standard errors for confidence interval construction of estimated parameters, the missing information principle is applied to adjust information matrix estimates. We compare the adjusted information matrix-based standard error estimates with the bootstrap standard error estimates both obtained using the fast MCEM algorithm through an extensive Monte Carlo study. Simulation demonstrates that the adjusted information matrix approach estimates the standard error similarly with the bootstrap methods under certain scenarios. The bootstrap percentile intervals have satisfactory coverage probabilities. We then apply the LCM analysis to a real data set of 122 subjects from a Gynecologic Oncology Group study of significant cervical lesion diagnosis in women with atypical glandular cells of undetermined significance to compare the diagnostic accuracy of a histology-based evaluation, a carbonic anhydrase-IX biomarker-based test and a human papillomavirus DNA test.     

Variational Bayes with synthetic likelihood

Synthetic likelihood is an attractive approach to likelihood-free inference when an approximately Gaussian summary statistic for the data, informative for inference about the parameters, is available. The synthetic likelihood method derives an approximate likelihood function from a plug-in normal density estimate for the summary statistic, with plug-in mean and covariance matrix obtained by Monte Carlo simulation from the model. In this article, we develop alternatives to Markov chain Monte Carlo implementations of Bayesian synthetic likelihoods with reduced computational overheads. Our approach uses stochastic gradient variational inference methods for posterior approximation in the synthetic likelihood context, employing unbiased estimates of the log likelihood. We compare the new method with a related likelihood-free variational inference technique in the literature, while at the same time improving the implementation of that approach in a number of ways. These new algorithms are feasible to implement in situations which are challenging for conventional approximate Bayesian computation methods, in terms of the dimensionality of the parameter and summary statistic.     

Indirect inference for fractional time series models

In this paper we present an indirect estimation procedure for (ARFIMA) fractional time series models.The estimation method is based on an ‘incorrect’criterion which does not directly provide a consistent estimator of the parameters of interest,but leads to correct inference by using simulations.

The main steps are the following. First,we consider an auxiliary model which can be easily estimated.Specifically,we choose the finite lag Autoregressive model.Then, this is estimated on the observations and simulated values drawn from the ARFIMA model associated with a given value of the parameters of interest.Finally,the latter is calibrated in order to obtain close values of the two estimators of the auxiliary parameters.

In this article,we describe the estimation procedure and compare the performance of the indirect estimator with some alternative estimators based on the likelihood function by a Monte Carlo study.