Exact Bayesian modeling for bivariate Poisson data and extensions

Bivariate count data arise in several different disciplines (epidemiology, marketing, sports statistics just to name a few) and the bivariate Poisson distribution being a generalization of the Poisson distribution plays an important role in modelling such data. In the present paper we present a Bayesian estimation approach for the parameters of the bivariate Poisson model and provide the posterior distributions in closed forms. It is shown that the joint posterior distributions are finite mixtures of conditionally independent gamma distributions for which their full form can be easily deduced by a recursively updating scheme. Thus, the need of applying computationally demanding MCMC schemes for Bayesian inference in such models will be removed, since direct sampling from the posterior will become available, even in cases where the posterior distribution of functions of the parameters is not available in closed form. In addition, we define a class of prior distributions that possess an interesting conjugacy property which extends the typical notion of conjugacy, in the sense that both prior and posteriors belong to the same family of finite mixture models but with different number of components. Extension to certain other models including multivariate models or models with other marginal distributions are discussed.     

BAYESIAN ESTIMATION OF RUIN PROBABILITIES WITH A HETEROGENEOUS AND HEAVY-TAILED INSURANCE CLAIM-SIZE DISTRIBUTION

This paper describes a Bayesian approach to make inference for risk reserve processes with an unknown claim‐size distribution. A flexible model based on mixtures of Erlang distributions is proposed to approximate the special features frequently observed in insurance claim sizes, such as long tails and heterogeneity. A Bayesian density estimation approach for the claim sizes is implemented using reversible jump Markov chain Monte Carlo methods. An advantage of the considered mixture model is that it belongs to the class of phase‐type distributions, and thus explicit evaluations of the ruin probabilities are possible. Furthermore, from a statistical point of view, the parametric structure of the mixtures of the Erlang distribution offers some advantages compared with the whole over‐parametrized family of phase‐type distributions. Given the observed claim arrivals and claim sizes, we show how to estimate the ruin probabilities, as a function of the initial capital, and predictive intervals that give a measure of the uncertainty in the estimations.     

Bayesian finite mixtures with an unknown number of components: The allocation sampler

A new Markov chain Monte Carlo method for the Bayesian analysis of finite mixture distributions with an unknown number of components is presented. The sampler is characterized by a state space consisting only of the number of components and the latent allocation variables. Its main advantage is that it can be used, with minimal changes, for mixtures of components from any parametric family, under the assumption that the component parameters can be integrated out of the model analytically. Artificial and real data sets are used to illustrate the method and mixtures of univariate and of multivariate normals are explicitly considered. The problem of label switching, when parameter inference is of interest, is addressed in a post-processing stage.     

Forecasting future values of changing sequences

Sequences of independent random variables are observed and on the basis of these observations future values of the process are forecast. The Bayesian predictive density of k future observations for normal, exponential, and binomial sequences which change exactly once are analyzed for several cases. It is seen that the Bayesian predictive densities are mixtures of standard probability distributions. For example, with normal sequences the Bayesian predictive density is a mixture of either normal or t-distributions, depending on whether or not the common variance is known. The mixing probabilities are the same as those occurring in the corresponding posterior distribution of the mean(s) of the sequence. The predictive mass function of the number of future successes that will occur in a changing Bernoulli sequence is computed and point and interval predictors are illustrated.     

Clustering Discrete Data Through the Multinomial Mixture Model

In this work, the multinomial mixture model is studied, through a maximum likelihood approach. The convergence of the maximum likelihood estimator to a set with characteristics of interest is shown. A method to select the number of mixture components is developed based on the form of the maximum likelihood estimator. A simulation study is then carried out to verify its behavior. Finally, two applications on real data of multinomial mixtures are presented.     

On nonparametric Bayesian inference for the distribution of a random sample

The nonparametric Bayesian approach for inference regarding the unknown distribution of a random sample customarily assumes that this distribution is random and arises through Dirichlet-process mixing. Previous work within this setting has focused on the mean of the posterior distribution of this random distribution, which is the predictive distribution of a future observation given the sample. Our interest here is in learning about other features of this posterior distribution as well as about posteriors associated with functionals of the distribution of the data. We indicate how to do this in the case of linear functionals. An illustration, with a sample from a Gamma distribution, utilizes Dirichlet-process mixtures of normals to recover this distribution and its features.     

Posterior convergence rates for Dirichlet mixtures of beta densities

We consider Bayesian density estimation for compactly supported densities using Bernstein mixtures of beta-densities equipped with a Dirichlet prior on the distribution function. We derive the rate of convergence for α$\alpha$-smooth densities for 0<α?2$0<\alpha ?2$ and show that a faster rate of convergence can be obtained by using fewer terms in the mixtures than proposed before. The Bayesian procedure adapts to the unknown value of α$\alpha$. The modified Bayesian procedure is rate-optimal if α$\alpha$ is at most one. This result can be extended to two dimensions.     

Modelling stochastic order in the analysis of receiver operating characteristic data: Bayesian non-parametric approaches

Summary.  The evaluation of the performance of a continuous diagnostic measure is a commonly encountered task in medical research. We develop Bayesian non-parametric models that use Dirichlet process mixtures and mixtures of Polya trees for the analysis of continuous serologic data. The modelling approach differs from traditional approaches to the analysis of receiver operating characteristic curve data in that it incorporates a stochastic ordering constraint for the distributions of serologic values for the infected and non-infected populations. Biologically such a constraint is virtually always feasible because serologic values from infected individuals tend to be higher than those for non-infected individuals. The models proposed provide data-driven inferences for the infected and non-infected population distributions, and for the receiver operating characteristic curve and corresponding area under the curve. We illustrate and compare the predictive performance of the Dirichlet process mixture and mixture of Polya trees approaches by using serologic data for Johne's disease in dairy cattle.     

Bayesian modeling of autoregressive partial linear models with scale mixture of normal errors

Normality and independence of error terms are typical assumptions for partial linear models. However, these assumptions may be unrealistic in many fields, such as economics, finance and biostatistics. In this paper, a Bayesian analysis for partial linear model with first-order autoregressive errors belonging to the class of the scale mixtures of normal distributions is studied in detail. The proposed model provides a useful generalization of the symmetrical linear regression model with independent errors, since the distribution of the error term covers both correlated and thick-tailed distributions, and has a convenient hierarchical representation allowing easy implementation of a Markov chain Monte Carlo scheme. In order to examine the robustness of the model against outlying and influential observations, a Bayesian case deletion influence diagnostics based on the Kullback–Leibler (K–L) divergence is presented. The proposed method is applied to monthly and daily returns of two Chilean companies.     

Hierarchical Bayesian modeling of marked non-homogeneous Poisson processes with finite mixtures and inclusion of covariate information

We investigate marked non-homogeneous Poisson processes using finite mixtures of bivariate normal components to model the spatial intensity function. We employ a Bayesian hierarchical framework for estimation of the parameters in the model, and propose an approach for including covariate information in this context. The methodology is exemplified through an application involving modeling of and inference for tornado occurrences.     

A non-Bayesian predictive approach for statistical calibration

A non-Bayesian predictive approach for statistical calibration is introduced. This is based on particularizing to the calibration setting the general definition of non-Bayesian (or frequentist) predictive probability density proposed by Harris [Predictive fit for natural exponential families, Biometrika 76 (1989), pp. 675–684]. The new method is elaborated in detail in case of Gaussian linear univariate calibration. Through asymptotic analysis and simulation results with moderate sample size, it is shown that the non-Bayesian predictive estimator of the unknown parameter of interest in calibration (commonly, a substance concentration) favourably compares with previous estimators such as the classical and inverse estimators, especially for extrapolation problems. A further advantage of the non-Bayesian predictive approach is that it provides not only point estimates but also a predictive likelihood function that allows the researcher to explore the plausibility of any possible parameter value, which is also briefly illustrated. Furthermore, the introduced approach offers a general framework that can be applied for calibrating on the basis of any parametric statistical model, so making it potentially useful for nonlinear and non-Gaussian calibration problems.     

A hierarchical Bayesian regression model for the uncertain functional constraint using screened scale mixtures of Gaussian distributions

This paper considers a hierarchical Bayesian analysis of regression models using a class of Gaussian scale mixtures. This class provides a robust alternative to the common use of the Gaussian distribution as a prior distribution in particular for estimating the regression function subject to uncertainty about the constraint. For this purpose, we use a family of rectangular screened multivariate scale mixtures of Gaussian distribution as a prior for the regression function, which is flexible enough to reflect the degrees of uncertainty about the functional constraint. Specifically, we propose a hierarchical Bayesian regression model for the constrained regression function with uncertainty on the basis of three stages of a prior hierarchy with Gaussian scale mixtures, referred to as a hierarchical screened scale mixture of Gaussian regression models (HSMGRM). We describe distributional properties of HSMGRM and an efficient Markov chain Monte Carlo algorithm for posterior inference, and apply the proposed model to real applications with constrained regression models subject to uncertainty.     

A Bayesian approach on the two-piece scale mixtures of normal homoscedastic nonlinear regression models

In this application note paper, we propose and examine the performance of a Bayesian approach for a homoscedastic nonlinear regression (NLR) model assuming errors with two-piece scale mixtures of normal (TP-SMN) distributions. The TP-SMN is a large family of distributions, covering both symmetrical/ asymmetrical distributions as well as light/heavy tailed distributions, and provides an alternative to another well-known family of distributions, called scale mixtures of skew-normal distributions. The proposed family and Bayesian approach provides considerable flexibility and advantages for NLR modelling in different practical settings. We examine the performance of the approach using simulated and real data.KEYWORDS: Gibbs sampling, MCMC method, nonlinear regression model, scale mixtures of normal family, two-piece distributions     

Almost nonparametric inference for repeated measures in mixture models

We consider ways to estimate the mixing proportions in a finite mixture distribution or to estimate the number of components of the mixture distribution without making parametric assumptions about the component distributions. We require a vector of observations on each subject. This vector is mapped into a vector of 0s and 1s and summed. The resulting distribution of sums can be modelled as a mixture of binomials. We then work with the binomial mixture. The efficiency and robustness of this method are compared with the strategy of assuming multivariate normal mixtures when, typically, the true underlying mixture distribution is different. It is shown that in many cases the approach based on simple binomial mixtures is superior.     

Robust Bayesian analysis of loss reserving data using scale mixtures distributions

It is vital for insurance companies to have appropriate levels of loss reserving to pay outstanding claims and related settlement costs. With many uncertainties and time lags inherently involved in the claims settlement process, loss reserving therefore must be based on estimates. Existing models and methods cannot cope with irregular and extreme claims and hence do not offer an accurate prediction of loss reserving. This paper extends the conventional normal error distribution in loss reserving modeling to a range of heavy-tailed distributions which are expressed by certain scale mixtures forms. This extension enables robust analysis and, in addition, allows an efficient implementation of Bayesian analysis via Markov chain Monte Carlo simulations. Various models for the mean of the sampling distributions, including the log-Analysis of Variance (ANOVA), log-Analysis of Covariance (ANCOVA) and state space models, are considered and the straightforward implementation of scale mixtures distributions is demonstrated using OpenBUGS.     

On Bayesian Analysis of Mixtures with an Unknown Number of Components (with discussion)

New methodology for fully Bayesian mixture analysis is developed, making use of reversible jump Markov chain Monte Carlo methods that are capable of jumping between the parameter subspaces corresponding to different numbers of components in the mixture. A sample from the full joint distribution of all unknown variables is thereby generated, and this can be used as a basis for a thorough presentation of many aspects of the posterior distribution. The methodology is applied here to the analysis of univariate normal mixtures, using a hierarchical prior model that offers an approach to dealing with weak prior information while avoiding the mathematical pitfalls of using improper priors in the mixture context.     

Decision‐making in a phase II clinical trial: a new approach combining Bayesian and frequentist concepts

The aim of a phase II clinical trial is to decide whether or not to develop an experimental therapy further through phase III clinical evaluation. In this paper, we present a Bayesian approach to the phase II trial, although we assume that subsequent phase III clinical trials will have standard frequentist analyses. The decision whether to conduct the phase III trial is based on the posterior predictive probability of a significant result being obtained. This fusion of Bayesian and frequentist techniques accepts the current paradigm for expressing objective evidence of therapeutic value, while optimizing the form of the phase II investigation that leads to it. By using prior information, we can assess whether a phase II study is needed at all, and how much or what sort of evidence is required. The proposed approach is illustrated by the design of a phase II clinical trial of a multi‐drug resistance modulator used in combination with standard chemotherapy in the treatment of metastatic breast cancer. Copyright © 2005 John Wiley & Sons, Ltd     

Improving the EM algorithm for mixtures

One of the estimating equations of the Maximum Likelihood Estimation method, for finite mixtures of the one parameter exponential family, is the first moment equation. This can help considerably in reducing the labor and the cost of calculating the Maximum Likelihood estimates. In this paper it is shown that the EM algorithm can be substantially improved by using this result when applied for mixture models. A short discussion about other methods proposed for the calculation of the Maximum Likelihood estimates are also reported showing that the above findings can help in this direction too.     

Bayesian semiparametric modeling and inference with mixtures of?symmetric distributions

We propose a semiparametric modeling approach for mixtures of symmetric distributions. The mixture model is built from a common symmetric density with different components arising through different location parameters. This structure ensures identifiability for mixture components, which is a key feature of the model as it allows applications to settings where primary interest is inference for the subpopulations comprising the mixture. We focus on the two-component mixture setting and develop a Bayesian model using parametric priors for the location parameters and for the mixture proportion, and a nonparametric prior probability model, based on Dirichlet process mixtures, for the random symmetric density. We present an approach to inference using Markov chain Monte Carlo posterior simulation. The performance of the model is studied with a simulation experiment and through analysis of a rainfall precipitation data set as well as with data on eruptions of the Old Faithful geyser.