Some asymptotic results for semiparametric nonlinear mixed-effects models with incomplete data

In modeling complex longitudinal data, semiparametric nonlinear mixed-effects (SNLME) models are very flexible and useful. Covariates are often introduced in the models to partially explain the inter-individual variations. In practice, data are often incomplete in the sense that there are often measurement errors and missing data in longitudinal studies. The likelihood method is a standard approach for inference for these models but it can be computationally very challenging, so computationally efficient approximate methods are quite valuable. However, the performance of these approximate methods is often based on limited simulation studies, and theoretical results are unavailable for many approximate methods. In this article, we consider a computationally efficient approximate method for a class of SNLME models with incomplete data and investigate its theoretical properties. We show that the estimates based on the approximate method are consistent and asymptotically normally distributed.     

Empirical likelihood for varying-coefficient semiparametric mixed-effects errors-in-variables models with longitudinal data

In this paper, the empirical likelihood inferences for varying-coefficient semiparametric mixed-effects errors-in-variables models with longitudinal data are investigated. We construct the empirical log-likelihood ratio function for the fixed-effects parameters and the mean parameters of random-effects. The empirical log-likelihood ratio at the true parameters is proven to be asymptotically $\chi ^2_{q+r}$ , where $q$ and $r$ are dimensions of the fixed and random effects respectively, and the corresponding confidence regions for them are then constructed. We also obtain the maximum empirical likelihood estimator of the parameters of interest, and prove it is the asymptotically normal under some suitable conditions. A simulation study and a real data application are undertaken to assess the finite sample performance of the proposed method.     

Parameter estimation of nonlinear mixed-effects models using first-order conditional linearization and the EM algorithm

Nonlinear mixed-effects (NLME) models are flexible enough to handle repeated-measures data from various disciplines. In this article, we propose both maximum-likelihood and restricted maximum-likelihood estimations of NLME models using first-order conditional expansion (FOCE) and the expectation–maximization (EM) algorithm. The FOCE-EM algorithm implemented in the ForStat procedure SNLME is compared with the Lindstrom and Bates (LB) algorithm implemented in both the SAS macro NLINMIX and the S-Plus/R function nlme in terms of computational efficiency and statistical properties. Two realworld data sets an orange tree data set and a Chinese fir (Cunninghamia lanceolata) data set, and a simulated data set were used for evaluation. FOCE-EM converged for all mixed models derived from the base model in the two realworld cases, while LB did not, especially for the models in which random effects are simultaneously considered in several parameters to account for between-subject variation. However, both algorithms had identical estimated parameters and fit statistics for the converged models. We therefore recommend using FOCE-EM in NLME models, particularly when convergence is a concern in model selection.     

Parameter estimation for semiparametric ordinary differential equation models

Abstract

We propose a new class of two-stage parameter estimation methods for semiparametric ordinary differential equation (ODE) models. In the first stage, state variables are estimated using a penalized spline approach; In the second stage, form of numerical discretization algorithms for an ODE solver is used to formulate estimating equations. Estimated state variables from the first stage are used to obtain more data points for the second stage. Asymptotic properties for the proposed estimators are established. Simulation studies show that the method performs well, especially for small sample. Real life use of the method is illustrated using Influenza specific cell-trafficking study.     

Estimation in nonlinear mixed-effects models using heavy-tailed distributions

Nonlinear mixed-effects models are very useful to analyze repeated measures data and are used in a variety of applications. Normal distributions for random effects and residual errors are usually assumed, but such assumptions make inferences vulnerable to the presence of outliers. In this work, we introduce an extension of a normal nonlinear mixed-effects model considering a subclass of elliptical contoured distributions for both random effects and residual errors. This elliptical subclass, the scale mixtures of normal (SMN) distributions, includes heavy-tailed multivariate distributions, such as Student-t, the contaminated normal and slash, among others, and represents an interesting alternative to outliers accommodation maintaining the elegance and simplicity of the maximum likelihood theory. We propose an exact estimation procedure to obtain the maximum likelihood estimates of the fixed-effects and variance components, using a stochastic approximation of the EM algorithm. We compare the performance of the normal and the SMN models with two real data sets.     

Conditions for consistent estimation in mixed-effects models for binary matched-pairs data

Parametric mixed-effects logistic models can provide effective analysis of binary matched-pairs data. Responses are assumed to follow a logistic model within pairs, with an intercept which varies across pairs according to a specified family of probability distributions G. In this paper we give necessary and sufficient conditions for consistent covariate effect estimation and present a geometric view of estimation which shows that when the assumed family of mixture distributions is rich enough, estimates of the effect of the binary covariate are typically consistent. The geometric view also shows that under the conditions for consistent estimation, the mixed-model estimator is identical to the familar conditional-likelihood estimator for matched pairs. We illustrate the findings with some examples.     

Restricted minimax estimation in semiparametric linear models

Abstract

In this article we develop the minimax estimation approach of general linear models to the semiparametric linear models when the parameters are simultaneously constrained by an ellipsoid and linear restrictions. Combining sample information and prior constraints the minimax estimator is obtained and compared with partially least square estimator by theoretical and simulation methods.     

Locally efficient semiparametric estimators for a class of Poisson models with measurement error

The presence of measurement error may cause bias in parameter estimation and can lead to incorrect conclusions in data analyses. Despite a large body of literature on general measurement error problems, relatively few works exist to handle Poisson models. In this article we thoroughly study Poisson models with errors in covariates and propose consistent and locally efficient semiparametric estimators. We assess the finite sample performance of the estimators through extensive simulation studies and illustrate the proposed methodologies by analyzing data from the Stroke Recovery in Underserved Populations Study. The Canadian Journal of Statistics 47: 157–181; 2019 © 2019 Statistical Society of Canada     

Quantile regression-based Bayesian semiparametric mixed-effects models for longitudinal data with non-normal,missing and mismeasured covariate

Quantile regression (QR) models have received increasing attention recently for longitudinal data analysis. When continuous responses appear non-centrality due to outliers and/or heavy-tails, commonly used mean regression models may fail to produce efficient estimators, whereas QR models may perform satisfactorily. In addition, longitudinal outcomes are often measured with non-normality, substantial errors and non-ignorable missing values. When carrying out statistical inference in such data setting, it is important to account for the simultaneous treatment of these data features; otherwise, erroneous or even misleading results may be produced. In the literature, there has been considerable interest in accommodating either one or some of these data features. However, there is relatively little work concerning all of them simultaneously. There is a need to fill up this gap as longitudinal data do often have these characteristics. Inferential procedure can be complicated dramatically when these data features arise in longitudinal response and covariate outcomes. In this article, our objective is to develop QR-based Bayesian semiparametric mixed-effects models to address the simultaneous impact of these multiple data features. The proposed models and method are applied to analyse a longitudinal data set arising from an AIDS clinical study. Simulation studies are conducted to assess the performance of the proposed method under various scenarios.     

Root-n-consistent semiparametric estimation of partially linear models for weakly dependent observations

We consider estimation of the linear part in a partially linear model for absolutely regular observations. The estimator using random weights are proposed and the asymptotic normality of the estimator is established without compact support assumption.     

Efficient semiparametric estimation in generalized partially linear additive models

In this paper we study semiparametric generalized additive models in which some part of the additive function is linear. We study the semiparametric efficiency under this regression model for the exponential family. We also present an asymptotically efficient estimation procedure based on the generalized profile likelihood approach.     

Bayesian estimation on semiparametric models with shape restricted B-splines

In this paper, we develop a Bayesian estimation procedure for semiparametric models under shape constrains. The approach uses a hierarchical Bayes framework and characterizations of shape-constrained B-splines. We employ Markov chain Monte Carlo methods for model fitting, using a truncated normal distribution as the prior for the coefficients of basis functions to ensure the desired shape constraints. The small sample properties of the function estimators are provided via simulation and compared with existing methods. A real data analysis is conducted to illustrate the application of the proposed method.     

On confidence regions of semiparametric nonlinear reproductive dispersion models

This article investigates the confidence regions for semiparametric nonlinear reproductive dispersion models (SNRDMs), which is an extension of nonlinear regression models. Based on local linear estimate of nonparametric component and generalized profile likelihood estimate of parameter in SNRDMs, a modified geometric framework of Bates and Wattes is proposed. Within this geometric framework, we present three kinds of improved approximate confidence regions for the parameters and parameter subsets in terms of curvatures. The work extends the previous results of Hamilton et al. [in Accounting for intrinsic nonlinearity in nonlinear regression parameter inference regions, Ann. Statist. 10, pp. 386–393, 1982], Hamilton [in Confidence regions for parameter subset in nonlinear regression, Biometrika, 73, pp. 57–64, 1986], Wei [in On confidence regions of embedded models in regular parameter families (a geometric approch), Austral. J. Statist. 36, pp. 327–338, 1994], Tang et al. [in Confidence regions in quasi-likelihood nonlinear models: a geometric approach, J. Biomath. 15, pp. 55–64, 2000b] and Zhu et al. [in On confidence regions of semiparametric nonlinear regression models, Acta. Math. Scient. 20, pp. 68–75, 2000].     

Influence analysis of additive mixed-effects nonlinear regression models via EM algorithm

This paper presents a unified method for influence analysis to deal with random effects appeared in additive nonlinear regression models for repeated measurement data. The basic idea is to apply the Q-function, the conditional expectation of the complete-data log-likelihood function obtained from EM algorithm, instead of the observed-data log-likelihood function as used in standard influence analysis. Diagnostic measures are derived based on the case-deletion approach and the local influence approach. Two real examples and a simulation study are examined to illustrate our methodology.     

Sequential estimation for semiparametric models with application to the proportional hazards model

In this paper, we show that if the Euclidean parameter of a semiparametric model can be estimated through an estimating function, we can extend straightforwardly conditions by Dmitrienko and Govindarajulu [2000. Ann. Statist. 28 (5), 1472–1501] in order to prove that the estimator indexed by any regular sequence (sequential estimator), has the same asymptotic behavior as the non-sequential estimator. These conditions also allow us to obtain the asymptotic normality of the stopping rule, for the special case of sequential confidence sets. These results are applied to the proportional hazards model, for which we show that after slight modifications, the classical assumptions given by Andersen and Gill [1982. Ann. Statist. 10(4), 1100–1120] are sufficient to obtain the asymptotic behavior of the sequential version of the well-known [Cox, 1972. J. Roy. Statist. Soc. Ser. B (34), 187–220] partial maximum likelihood estimator. To prove this result we need to establish a strong convergence result for the regression parameter estimator, involving mainly exponential inequalities for both continuous martingales and some basic empirical processes. A typical example of a fixed-width confidence interval is given and illustrated by a Monte Carlo study.     

Bayesian estimation and influence diagnostics of generalized partially linear mixed-effects models for longitudinal data

This paper develops a Bayesian approach to obtain the joint estimates of unknown parameters, nonparametric functions and random effects in generalized partially linear mixed models (GPLMMs), and presents three case deletion influence measures to identify influential observations based on the φ-divergence, Cook's posterior mean distance and Cook's posterior mode distance of parameters. Fisher's iterative scoring algorithm is developed to evaluate the posterior modes of parameters in GPLMMs. The first-order approximation to Cook's posterior mode distance is presented. The computationally feasible formulae for the φ-divergence diagnostic and Cook's posterior mean distance are given. Several simulation studies and an example are presented to illustrate our proposed methodologies.     

Efficiency of the generalized difference-based Liu estimators in semiparametric regression models with correlated errors

In this paper, a generalized difference-based estimator is introduced for the vector parameter β in the semiparametric regression model when the errors are correlated. A generalized difference-based Liu estimator is defined for the vector parameter β in the semiparametric regression model. Under the linear nonstochastic constraint Rβ=r, the generalized restricted difference-based Liu estimator is given. The risk function for the β?_GRD(η) associated with weighted balanced loss function is presented. The performance of the proposed estimators is evaluated by a simulated data set.