Optimal designs for generalized linear models

Summary This paper solves some D-optimal design problems for certain Generalized Linear Models where the mean depends on two parameters and two explanatory variables. In all of the cases considered the support point of the optimal designs are found to be independent of the unknown parameters. While in some cases the optimal design measures are given by two points with equal weights, in others the support is given by three point with weights depending on the unknown parameters, hence the designs are locally optimal in general. Empirical results on the efficiency of the locally optimal designs are also given. Some of the designs found can also be used for planning D-optimal experiments for the normal linear model, where the mean must be positive. This research was carried out in part at University College, London as an M.Sc. project. Thanks are due to Prof. I. Ford (University of Glasgow) and Prof. A. Giovagnoli (University of Perugia) for their valuable suggestions and critical observations.     

On Rao score and PearsonX 2 statistics in generalized linear models

The identity of the Rao score and PearsonX ² statistics is well known in the areas where the latter was first introduced: goodness-of-fit in contingency tables and binary responses. We show in this paper that the same identity holds when the two statistics are used for testing goodness-of-fit of Generalized Linear Models. We also highlight the connections that exist between the two statistics when they are used for the comparison of nested models. Finally, we discuss some merits of these unifying results. Work financially supported by cofin. MIUR grants 2000 and 2002.     

Robust inference in generalized linear models for longitudinal data

The author develops a robust quasi‐likelihood method, which appears to be useful for down‐weighting any influential data points when estimating the model parameters. He illustrates the computational issues of the method in an example. He uses simulations to study the behaviour of the robust estimates when data are contaminated with outliers, and he compares these estimates to those obtained by the ordinary quasi‐likelihood method.     

Optimal designs for tumor regrowth models

Most growth curves can only be used to model the tumor growth under no intervention. To model the growth curves for treated tumor, both the growth delay due to the treatment and the regrowth of the tumor after the treatment need to be taken into account. In this paper, we consider two tumor regrowth models and determine the locally D- and c-optimal designs for these models. We then show that the locally D- and c-optimal designs are minimally supported. We also consider two equally spaced designs as alternative designs and evaluate their efficiencies.     

A hybrid Newton-type method for censored survival data using double weights in linear models

As an alternative to the Cox model, the rank-based estimating method for censored survival data has been studied extensively since it was proposed by Tsiatis [Tsiatis AA (1990) Ann Stat 18:354–372] among others. Due to the discontinuity feature of the estimating function, a significant amount of work in the literature has been focused on numerical issues. In this article, we consider the computational aspects of a family of doubly weighted rank-based estimating functions. This family is rich enough to include both estimating functions of Tsiatis (1990) for the randomly observed data and of Nan et al. [Nan B, Yu M, Kalbfleisch JD (2006) Biometrika (to appear)] for the case-cohort data as special examples. The latter belongs to the biased sampling problems. We show that the doubly weighted rank-based discontinuous estimating functions are monotone, a property established for the randomly observed data in the literature, when the generalized Gehan-type weights are used. Though the estimating problem can be formulated to a linear programming problem as that for the randomly observed data, due to its easily uncontrollable large scale even for a moderate sample size, we instead propose a Newton-type iterated method to search for an approximate solution of the (system of) discontinuous monotone estimating equation(s). Simulation results provide a good demonstration of the proposed method. We also apply our method to a real data example.     

Optimal design for linear regression models in the presence of heteroscedasticity caused by random coefficients

Random coefficients may result in heteroscedasticity of observations. For particular situations, where only one observation is available per individual, we derive optimal designs based on the geometry of the design locus.     

Optimal designs for response functions with a downturn

In many toxicological assays, interactions between primary and secondary effects may cause a downturn in mean responses at high doses. In this situation, the typical monotonicity assumption is invalid and may be quite misleading. Prior literature addresses the analysis of response functions with a downturn, but so far as we know, this paper initiates the study of experimental design for this situation. A growth model is combined with a death model to allow for the downturn in mean doses. Several different objective functions are studied. When the number of treatments equals the number of parameters, Fisher information is found to be independent of the model of the treatment means and on the magnitudes of the treatments. In general, A- and D_A-optimal weights for estimating adjacent mean differences are found analytically for a simple model and numerically for a biologically motivated model. Results on c-optimality are also obtained for estimating the peak dose and the EC₅₀ (the treatment with response half way between the control and the peak response on the increasing portion of the response function). Finally, when interest lies only in the increasing portion of the response function, we propose composite D-optimal designs.     

Rank-order choice-based conjoint experiments: Efficiency and design

In a rank-order choice-based conjoint experiment, the respondent is asked to rank a number of alternatives of a number of choice sets. In this paper, we study the efficiency of those experiments and propose a D-optimality criterion for rank-order experiments to find designs yielding the most precise parameter estimators. For that purpose, an expression of the Fisher information matrix for the rank-ordered conditional logit model is derived which clearly shows how much additional information is provided by each extra ranking step. A simulation study shows that, besides the Bayesian D-optimal ranking design, the Bayesian D-optimal choice design is also an appropriate design for this type of experiments. Finally, it is shown that considerable improvements in estimation and prediction accuracy are obtained by including extra ranking steps in an experiment.     

Order statistics from trivariate normal and -distributions in terms of generalized skew-normal and skew- distributions

We consider here a generalization of the skew-normal distribution, GSN(λ₁,λ₂,ρ), defined through a standard bivariate normal distribution with correlation ρ, which is a special case of the unified multivariate skew-normal distribution studied recently by Arellano-Valle and Azzalini [2006. On the unification of families of skew-normal distributions. Scand. J. Statist. 33, 561–574]. We then present some simple and useful properties of this distribution and also derive its moment generating function in an explicit form. Next, we show that distributions of order statistics from the trivariate normal distribution are mixtures of these generalized skew-normal distributions; thence, using the established properties of the generalized skew-normal distribution, we derive the moment generating functions of order statistics, and also present expressions for means and variances of these order statistics.Next, we introduce a generalized skew-t_ν distribution, which is a special case of the unified multivariate skew-elliptical distribution presented by Arellano-Valle and Azzalini [2006. On the unification of families of skew-normal distributions. Scand. J. Statist. 33, 561–574] and is in fact a three-parameter generalization of Azzalini and Capitanio's [2003. Distributions generated by perturbation of symmetry with emphasis on a multivariate skew t distribution. J. Roy. Statist. Soc. Ser. B 65, 367–389] univariate skew-t_ν form. We then use the relationship between the generalized skew-normal and skew-t_ν distributions to discuss some properties of generalized skew-t_ν as well as distributions of order statistics from bivariate and trivariate t_ν distributions. We show that these distributions of order statistics are indeed mixtures of generalized skew-t_ν distributions, and then use this property to derive explicit expressions for means and variances of these order statistics.     

Predictability of designs which adjust for imbalances in prognostic factors

Minimisation is a method often used in clinical trials to balance the treatment groups with respect to some prognostic factors. In the case of two treatments, the predictability of this method is calculated for different numbers of factors, different numbers of levels of each factor and for different proportions of the population at each level. It is shown that if we know nothing about the previous patients except the last treatment allocation, the next treatment can be correctly guessed more than 60% of the time if no biased coin is used. If the two previous assignments are known to have been the same, the next treatment can be guessed correctly around 80% of the time. Therefore, it is suggested that a biased coin should always be used with minimisation. Different choices of biased coin are investigated in terms of the reduction in predictability and the increase in imbalance that they produce. An alternative design to minimisation which makes use of optimum design theory is also investigated, by means of simulation, and does not appear to have any clear advantages over minimisation with a biased coin.     

A Note on Criterion-Robust Optimal Designs for Model Discrimination and Parameter Estimation in Polynomial Regression Models

Consider the problem of discriminating between the polynomial regression models on [?1, 1] and estimating parameters in the models. Zen and Tsai (2002 Zen , M. M. , Tsai , M. H. ( 2002 ). Some criterion-robust optimal designs for the dual problem of model discrimination and parameter estimation . Sankhya Ind. J. Statist. 64 : (Series B, Pt. 3) : 322 – 338 . [Google Scholar]) proposed a multiple-objective optimality criterion, M _γ-criterion, which uses weight γ (0 ≤ γ ≤ 1) for model discrimination and α = β = (1 ? γ)/2 for parameter estimation in each model. In this article, we generalize it to a wider setup with different values of α and β. For instance, α = 2 β suggests that the “smaller” model is more likely to be the true model. Using similar techniques, the corresponding criterion-robust optimal design is investigated. A study for the original criterion-robust optimal design with α = β, through M-efficiency, shows that it is good enough for any wider setup.     

Methodology and analysis for comparing discrete linear l1 approximation codes

This is the first of a projected series of papers dealing with computational experimentation in mathematical programming. This paper provides early results of a test case using four discrete linear L₁ approximation codes. Variables influencing code behavior are identified and measures of performance are specified. More importantly, an experimental design is developed for assessing code performance and is illustrated using the variable “problem size”.     

Comparison of two methods in estimating standard error of the method of simulated moments estimators for generalized linear mixed models

ABSTRACT

The likelihood of a generalized linear mixed model (GLMM) often involves high-dimensional integrals, which in general cannot be computed explicitly. When direct computation is not available, method of simulated moments (MSM) is a fairly simple way to estimate the parameters of interest. In this research, we compared parametric bootstrap (PB) and nonparametric bootstrap methods (NPB) in estimating the standard errors of MSM estimators for GLMM. Simulation results show that when the group size is large, the PB and NPB perform similarly; when group size is medium, NPB performs better than PB in estimating standard errors of the mean.     

Calculating the density and distribution function for the singly and doubly noncentral F

Simple, closed form saddlepoint approximations for the distribution and density of the singly and doubly noncentral F distributions are presented. Their overwhelming accuracy is demonstrated numerically using a variety of parameter values. The approximations are shown to be uniform in the right tail and the associated limitating relative error is derived. Difficulties associated with some algorithms used for exact computation of the singly noncentral F are noted.     

A special purpose linear programming algorithm for obtaining least absolute value estimators in a linear model with dummy variables

Dummy (0, 1) variables are frequently used in statistical modeling to represent the effect of certain extraneous factors. This paper presents a special purpose linear programming algorithm for obtaining least-absolute-value estimators in a linear model with dummy variables. The algorithm employs a compact basis inverse procedure and incorporates the advanced basis exchange techniques available in specialized algorithms for the general linear least-absolute-value problem. Computational results with a computer code version of the algorithm are given.     

A note on Läuter-type robust design for polynomial regression models

In this paper, we consider the problem of model robust design for simultaneous parameter estimation among a class of polynomial regression models with degree up to k. A generalized D-optimality criterion, the Ψ_α‐optimality criterion, first introduced by Läuter (1974) is considered for this problem. By applying the theory of canonical moments and the technique of maximin principle, we derive a model robust optimal design in the sense of having highest minimum Ψ_α‐efficiency. Numerical comparison indicates that the proposed design has remarkable performance for parameter estimation in all of the considered rival models.     

An economic statistical design of the Poisson EWMA control charts for monitoring nonconformities

An economic statistical model of the exponentially weighted moving average (EWMA) control chart for the average number of nonconformities in the sample is proposed. The statistical and economic performance of proposed design are evaluated using the average run length (ARL) and the hourly expected cost, respectively. A Markov chain approach is applied to derive expressions for ARL. The cost model is established based on the general cost function given in Lorenzen and Vance [The economic design of control charts: a unified approach. Technometrics. 1986;28:3–11]. An example is provided to illustrate the application of the proposed model. A sensitivity analysis is also carried out to investigate the effects of model parameters on the solution of the economic statistical design by using the design of experiments (DOE) technique.