Multiple Imputation for the Cox Proportional Hazards Model with Missing Covariates

We present three multiple imputation estimates for the Cox model with missing covariates. Two of the suggested estimates are asymptotically equivalent to estimates in the literature when the number of multiple imputations approaches infinity. The third estimate can be implemented using standard software that could handle time-varying covariates. This revised version was published online in July 2006 with corrections to the Cover Date.     

缺失数据下广义线性模型的经验似然推断

利用经验似然方法,讨论缺失数据下广义线性模型中参数的置信域问题,得到了对数经验似然比统计量的渐近分布为标准卡方分布;给出参数的一些估计量及其渐近分布,利用数据模拟解释了所提出的方法。     

Regression Analysis with Covariates Missing at Random: A Piece-wise Nonparametric Model for Missing Covariates

Statistical analysis for the regression model f _β(y | x, z) with missing values in the covariate vector X requires modeling of the covariate distribution g(x | z). Likelihood methods, including Ibrahim (1990 Ibrahim , J. G. ( 1990 ). Incomplete data in generalized linear models . J. Amer. Statist. Assoc. 85 : 765 – 769 .[Taylor & Francis Online], [Web of Science ®] , [Google Scholar]), Chen (2004 Chen , H. Y. (2004). Nonparametric and semiparametric models for missing covariates in parametric regression. J. Amer. Statist. Assoc. 99:1176–1189.[Taylor & Francis Online], [Web of Science ®] , [Google Scholar]), and Zhao (2005 Zhao , Y. ( 2005 ). Design and Efficient Estimation in Regression Analysis with Missing Data in Two-Phase Studies. Ph.D. thesis , University of Waterloo . [Google Scholar]), need either X or Z to be discrete. This article considers extending the likelihood methods to deal with cases where both X and Z may be continuous. We propose modeling the covariate distribution g(x | z) using a piece-wise nonparametric model, then a maximum likelihood estimate (MLE) of β can be computed following the maximum likelihood estimating procedure of Chen (2004 Chen , H. Y. (2004). Nonparametric and semiparametric models for missing covariates in parametric regression. J. Amer. Statist. Assoc. 99:1176–1189.[Taylor & Francis Online], [Web of Science ®] , [Google Scholar]) or Zhao (2005 Zhao , Y. ( 2005 ). Design and Efficient Estimation in Regression Analysis with Missing Data in Two-Phase Studies. Ph.D. thesis , University of Waterloo . [Google Scholar]). The resulting estimation method is easy to implement and the asymptotic properties of the MLE follow under certain conditions. Extensive simulation studies for different models indicate that the proposed method is acceptable for practical implementation. A real data example is used to illustrate the method.     

Estimation in Partially Linear Single-Index Models with Missing Covariates

In this article, we consider a partially linear single-index model Y = g(Z ^τθ₀) + X ^τβ₀ + ? when the covariate X may be missing at random. We propose weighted estimators for the unknown parametric and nonparametric part by applying weighted estimating equations. We establish normality of the estimators of the parameters and asymptotic expansion for the estimator of the nonparametric part when the selection probabilities are unknown. Simulation studies are also conducted to illustrate the finite sample properties of these estimators.     

Empirical-likelihood-based Test for Partially Linear Single-index Models with Error-prone Linear Covariates

In this article, we consider whether the empirical likelihood ratio (ELR) test is applicable to testing for serial correlation in the partially linear single-index models (PLSIM) with error-prone linear covariates. It is shown that under the null hypothesis the proposed ELR statistic follows asymptotically a χ²-distribution with the scale constant and the degrees of freedom. A comparison between the ELR and the normal approximation method is also considered. Both simulated and real data examples are used to illustrate our proposed methodology.     

A Class of Weighted Estimating Equations for Semiparametric Transformation Models with Missing Covariates

In survival analysis, covariate measurements often contain missing observations; ignoring this feature can lead to invalid inference. We propose a class of weighted estimating equations for right‐censored data with missing covariates under semiparametric transformation models. Time‐specific and subject‐specific weights are accommodated in the formulation of the weighted estimating equations. We establish unified results for estimating missingness probabilities that cover both parametric and non‐parametric modelling schemes. To improve estimation efficiency, the weighted estimating equations are augmented by a new set of unbiased estimating equations. The resultant estimator has the so‐called ‘double robustness’ property and is optimal within a class of consistent estimators.     

Buckley–James Type Estimator for Censored Data with Covariates Missing by Design

Abstract. The Buckley–James estimator (BJE) is a well‐known estimator for linear regression models with censored data. Ritov has generalized the BJE to a semiparametric setting and demonstrated that his class of Buckley–James type estimators is asymptotically equivalent to the class of rank‐based estimators proposed by Tsiatis. In this article, we revisit such relationship in censored data with covariates missing by design. By exploring a similar relationship between our proposed class of Buckley–James type estimating functions to the class of rank‐based estimating functions recently generalized by Nan, Kalbfleisch and Yu, we establish asymptotic properties of our proposed estimators. We also conduct numerical studies to compare asymptotic efficiencies from various estimators.     

Model Checks for Generalized Linear Models

In this paper we propose and study non-parametric tests for the validity of (composite) Generalized Linear Models with a given parametric link structure, which are based on certain empirical processes marked by the residuals. When properly transformed to their innovation part the resulting test statistics are distribution-free. The method perfectly adapts to a situation, when also the input vector follows a dimension reducing model.     

Regression Analysis of Length‐biased and Right‐censored Failure Time Data with Missing Covariates

Length‐biased and right‐censored failure time data arise from many fields, and their analysis has recently attracted a great deal of attention. Two examples of the areas that often produce such data are epidemiological studies and cancer screening trials. In this paper, we discuss regression analysis of such data in the presence of missing covariates, for which no established inference procedure seems to exist. For the problem, we consider the data arising from the proportional hazards model and propose two inverse probability weighted estimation procedures. The asymptotic properties of the resulting estimators are established, and the extensive simulation study conducted for the evaluation of the proposed methods suggests that they work well for practical situations.     

Efficient Robust Estimation for Linear Models with Missing Response at Random

Coefficient estimation in linear regression models with missing data is routinely carried out in the mean regression framework. However, the mean regression theory breaks down if the error variance is infinite. In addition, correct specification of the likelihood function for existing imputation approach is often challenging in practice, especially for skewed data. In this paper, we develop a novel composite quantile regression and a weighted quantile average estimation procedure for parameter estimation in linear regression models when some responses are missing at random. Instead of imputing the missing response by randomly drawing from its conditional distribution, we propose to impute both missing and observed responses by their estimated conditional quantiles given the observed data and to use the parametrically estimated propensity scores to weigh check functions that define a regression parameter. Both estimation procedures are resistant to heavy‐tailed errors or outliers in the response and can achieve nice robustness and efficiency. Moreover, we propose adaptive penalization methods to simultaneously select significant variables and estimate unknown parameters. Asymptotic properties of the proposed estimators are carefully investigated. An efficient algorithm is developed for fast implementation of the proposed methodologies. We also discuss a model selection criterion, which is based on an IC_Q ‐type statistic, to select the penalty parameters. The performance of the proposed methods is illustrated via simulated and real data sets.     

Missing Data Mechanisms for Analysing Longitudinal Data with Incomplete Observations in Both Responses and Covariates

Missing observations in both responses and covariates arise frequently in longitudinal studies. When missing data are missing not at random, inferences under the likelihood framework often require joint modelling of response and covariate processes, as well as missing data processes associated with incompleteness of responses and covariates. Specification of these four joint distributions is a nontrivial issue from the perspectives of both modelling and computation. To get around this problem, we employ pairwise likelihood formulations, which avoid the specification of third or higher order association structures. In this paper, we consider three specific missing data mechanisms which lead to further simplified pairwise likelihood (SPL) formulations. Under these missing data mechanisms, inference methods based on SPL formulations are developed. The resultant estimators are consistent, and enjoy better robustness and computation convenience. The performance is evaluated empirically though simulation studies. Longitudinal data from the National Population Health Survey and Waterloo Smoking Prevention Project are analysed to illustrate the usage of our methods.     

Bayesian Analysis of Nonlinear Reproductive Dispersion Mixed Models for Longitudinal Data with Nonignorable Missing Covariates

This article proposes a Bayesian approach, which can simultaneously obtain the Bayesian estimates of unknown parameters and random effects, to analyze nonlinear reproductive dispersion mixed models (NRDMMs) for longitudinal data with nonignorable missing covariates and responses. The logistic regression model is employed to model the missing data mechanisms for missing covariates and responses. A hybrid sampling procedure combining the Gibber sampler and the Metropolis-Hastings algorithm is presented to draw observations from the conditional distributions. Because missing data mechanism is not testable, we develop the logarithm of the pseudo-marginal likelihood, deviance information criterion, the Bayes factor, and the pseudo-Bayes factor to compare several competing missing data mechanism models in the current considered NRDMMs with nonignorable missing covaraites and responses. Three simulation studies and a real example taken from the paediatric AIDS clinical trial group ACTG are used to illustrate the proposed methodologies. Empirical results show that our proposed methods are effective in selecting missing data mechanism models.     

Outcome Prediction for Heart Failure Telemonitoring Via Generalized Linear Models with Functional Covariates

An effective methodology for dealing with data extracted from clinical surveys on heart failure linked to the Public Health Database is proposed. A model for recurrent events is used for modelling the occurrence of hospital readmissions in time, thus deriving a suitable way to compute individual cumulative hazard functions. Estimated cumulative hazard trajectories are then treated as functional data, and they are used as covariates along with clinical survey data within the framework of generalized linear models with functional covariates.     

Monitoring Structural Changes in Generalized Linear Models

In this article, we introduce two monitoring schemes to (sequentially) detect structural changes in generalized linear models and develop asymptotic theories for them. The first method is based on cumulative sums (CUSUM) of weighted residuals, in which the unknown in-control parameters have been replaced by its maximum likelihood (ML) estimate from the training sample, whereas the second scheme makes use of moving sums (MOSUM) of weighted residuals. We characterize the limit distribution of the test statistic and show that these tests are consistent. Moreover, we also obtain and tabulate the asymptotic critical values of the tests. Finally, we study the speed of detection under different conditions. The methods are illustrated and compared in several simulations.     

Statistical Inference on Partially Linear Additive Models with Missing Response Variables and Error-prone Covariates

This paper considers statistical inference for the partially linear additive models, which are useful extensions of additive models and partially linear models. We focus on the case where some covariates are measured with additive errors, and the response variable is sometimes missing. We propose a profile least-squares estimator for the parametric component and show that the resulting estimator is asymptotically normal. To construct a confidence region for the parametric component, we also propose an empirical-likelihood-based statistic, which is shown to have a chi-squared distribution asymptotically. Furthermore, a simulation study is conducted to illustrate the performance of the proposed methods.     

A Simple Derivation of Deletion Diagnostic Results for the General Linear Model with Correlated Errors

A general, simple and intuitive derivation is provided for diagnostics associated with the deletion of arbitrary subsets for the linear model with general covariance structure. These are seen to be most simply expressed, even for the well-studied case of independent and identically distributed data, in terms of a residual known variously as the conditional residual, the deletion prediction residual and the cross-validation residual. Particularly simple specializations arise when the subsets are of size 1 and of size 2, but the method is easy to apply for all subsets and to conditional deletions.     

A Profile Conditional Likelihood Approach for the Semiparametric Transformation Regression Model with Missing Covariates

We propose a profile conditional likelihood approach to handle missing covariates in the general semiparametric transformation regression model. The method estimates the marginal survival function by the Kaplan-Meier estimator, and then estimates the parameters of the survival model and the covariate distribution from a conditional likelihood, substituting the Kaplan-Meier estimator for the marginal survival function in the conditional likelihood. This method is simpler than full maximum likelihood approaches, and yields consistent and asymptotically normally distributed estimator of the regression parameter when censoring is independent of the covariates. The estimator demonstrates very high relative efficiency in simulations. When compared with complete-case analysis, the proposed estimator can be more efficient when the missing data are missing completely at random and can correct bias when the missing data are missing at random. The potential application of the proposed method to the generalized probit model with missing continuous covariates is also outlined.     

Bayesian Methods for Missing Covariates in Cure Rate Models

We propose methods for Bayesian inference for missing covariate data with a novel class of semi-parametric survival models with a cure fraction. We allow the missing covariates to be either categorical or continuous and specify a parametric distribution for the covariates that is written as a sequence of one dimensional conditional distributions. We assume that the missing covariates are missing at random (MAR) throughout. We propose an informative class of joint prior distributions for the regression coefficients and the parameters arising from the covariate distributions. The proposed class of priors are shown to be useful in recovering information on the missing covariates especially in situations where the missing data fraction is large. Properties of the proposed prior and resulting posterior distributions are examined. Also, model checking techniques are proposed for sensitivity analyses and for checking the goodness of fit of a particular model. Specifically, we extend the Conditional Predictive Ordinate (CPO) statistic to assess goodness of fit in the presence of missing covariate data. Computational techniques using the Gibbs sampler are implemented. A real data set involving a melanoma cancer clinical trial is examined to demonstrate the methodology.     

A Simulation-based Goodness-of-fit Test for Random Effects in Generalized Linear Mixed Models

Abstract.  The goodness-of-fit of the distribution of random effects in a generalized linear mixed model is assessed using a conditional simulation of the random effects conditional on the observations. Provided that the specified joint model for random effects and observations is correct, the marginal distribution of the simulated random effects coincides with the assumed random effects distribution. In practice, the specified model depends on some unknown parameter which is replaced by an estimate. We obtain a correction for this by deriving the asymptotic distribution of the empirical distribution function obtained from the conditional sample of the random effects. The approach is illustrated by simulation studies and data examples.     

Empirical Likelihood Inference for Longitudinal Data with Missing Response Variables and Error-Prone Covariates

We consider statistical inference for longitudinal partially linear models when the response variable is sometimes missing with missingness probability depending on the covariate that is measured with error. The block empirical likelihood procedure is used to estimate the regression coefficients and residual adjusted block empirical likelihood is employed for the baseline function. This leads us to prove a nonparametric version of Wilk's theorem. Compared with methods based on normal approximations, our proposed method does not require a consistent estimators for the asymptotic variance and bias. An application to a longitudinal study is used to illustrate the procedure developed here. A simulation study is also reported.