Semiparametric transformation models with random effects for clustered doubly censored data

For right-censored data, Zeng et al. [Semiparametirc transformation modes with random effects for clustered data. Statist Sin. 2008;18:355–377] proposed a class of semiparametric transformation models with random effects to formulate the effects of possibly time-dependent covariates on clustered failure times. In this article, we demonstrate that the approach of Zeng et al. can be extended to analyse clustered doubly censored data. The asymptotic properties of the nonparametric maximum likelihood estimators of the model parameters are derived. A simulation study is conducted to investigate the performance of the proposed estimators.     

Semiparametric analysis of transformation models with doubly censored data

Double censoring arises when T represents an outcome variable that can only be accurately measured within a certain range, [L, U], where L and U are the left- and right-censoring variables, respectively. In this note, using Martingale arguments of Chen et al. [3 Chen, K., Jin, Z. and Ying, Z. 2002. Semiparametric analysis of transformation models with censored data. Biometrika, 89: 659–668. [Crossref], [Web of Science ®] [Google Scholar]], we propose an estimator (denoted by ?β) for estimating regression coefficients of transformation model when L is always observed. Under Cox proportional hazards model, the proposed estimator is equivalent to the partial likelihood estimator for left-truncated and right-censored data if the left-censoring variables L were regarded as left-truncated variables. In this case, the estimator ?β can be obtained by the standard software. A simulation study is conducted to investigate the performance of ?β. For the purpose of comparison, the simulation study also includes the estimator proposed by Cai and Cheng [2 Cai, T. and Cheng, S. 2004. Semiparametric regression analysis for doubly censored data. Biometrika, 91: 277–290. [Crossref], [Web of Science ®] [Google Scholar]] for the case when L and U are always observed.     

Aalen's linear model for doubly censored data

Double censoring often occurs in registry studies when left censoring is present in addition to right censoring. In this work, we examine estimation of Aalen's nonparametric regression coefficients based on doubly censored data. We propose two estimation techniques. The first type of estimators, including ordinary least squared (OLS) estimator and weighted least squared (WLS) estimators, are obtained using martingale arguments. The second type of estimator, the maximum likelihood estimator (MLE), is obtained via expectation-maximization (EM) algorithms that treat the survival times of left censored observations as missing. Asymptotic properties, including the uniform consistency and weak convergence, are established for the MLE. Simulation results demonstrate that the MLE is more efficient than the OLS and WLS estimators.     

Additive hazards model with truncated and doubly censored data

In longitudinal studies, the additive hazard model is often used to analyze covariate effects on the duration time, defined as the elapsed time between the first and the second event. In this article, we consider the situation when the first event suffers partly interval censoring and the second event suffers left truncation and right-censoring. We proposed a two-step estimation procedure for estimating the regression coefficients of the additive hazards model. A simulation study is conducted to investigate the performance of the proposed estimator. The proposed method is applied to the Centers for Disease Control acquired immune deficiency syndrome blood transfusion data.     

Imputation methods for doubly censored HIV data

In medical research, it is common to have doubly censored survival data: origin time and event time are both subject to censoring. In this paper, we review simple and probability-based methods that are used to impute interval censored origin time and compare the performance of these methods through extensive simulations in the one-sample problem, two-sample problem and Cox regression model problem. The use of a bootstrap procedure for inference is demonstrated.     

Continuous covariate frailty models for censored and truncated clustered data

Using some logarithmic and integral transformation we transform a continuous covariate frailty model into a polynomial regression model with a random effect. The responses of this mixed model can be ‘estimated’ via conditional hazard function estimation. The random error in this model does not have zero mean and its variance is not constant along the covariate and, consequently, these two quantities have to be estimated. Since the asymptotic expression for the bias is complicated, the two-large-bandwidth trick is proposed to estimate the bias. The proposed transformation is very useful for clustered incomplete data subject to left truncation and right censoring (and for complex clustered data in general). Indeed, in this case no standard software is available to fit the frailty model, whereas for the transformed model standard software for mixed models can be used for estimating the unknown parameters in the original frailty model. A small simulation study illustrates the good behavior of the proposed method. This method is applied to a bladder cancer data set.     

Selection of linear mixed-effects models for clustered data

We consider model selection for linear mixed-effects models with clustered structure, where conditional Kullback–Leibler (CKL) loss is applied to measure the efficiency of the selection. We estimate the CKL loss by substituting the empirical best linear unbiased predictors (EBLUPs) into random effects with model parameters estimated by maximum likelihood. Although the BLUP approach is commonly used in predicting random effects and future observations, selecting random effects to achieve asymptotic loss efficiency concerning CKL loss is challenging and has not been well studied. In this paper, we propose addressing this difficulty using a conditional generalized information criterion (CGIC) with two tuning parameters. We further consider a challenging but practically relevant situation where the number, $m$, of clusters does not go to infinity with the sample size. Hence the random-effects variances are not consistently estimable. We show that via a novel decomposition of the CKL risk, the CGIC achieves consistency and asymptotic loss efficiency, whether $m$ is fixed or increases to infinity with the sample size. We also conduct numerical experiments to illustrate the theoretical findings.     

Estimation of the association for bivariate doubly censored data

We study the problem of estimating the association between two related survival variables when they follow a copula model and the bivariate doubly censored data is available. A two-stage estimation procedure is proposed and the asymptotic properties of the proposed estimator are established. Simulation studies are conducted to investigate the finite sample properties of the proposed estimate.     

Unbalanced cluster sizes and rates of convergence in mixed-effects models for clustered data

ABSTRACT

Convergence problems often arise when complex linear mixed-effects models are fitted. Previous simulation studies (see, e.g. [Buyse M, Molenberghs G, Burzykowski T, Renard D, Geys H. The validation of surrogate endpoints in meta-analyses of randomized experiments. Biostatistics. 2000;1:49–67, Renard D, Geys H, Molenberghs G, Burzykowski T, Buyse M. Validation of surrogate endpoints in multiple randomized clinical trials with discrete outcomes. Biom J. 2002;44:921–935]) have shown that model convergence rates were higher (i) when the number of available clusters in the data increased, and (ii) when the size of the between-cluster variability increased (relative to the size of the residual variability). The aim of the present simulation study is to further extend these findings by examining the effect of an additional factor that is hypothesized to affect model convergence, i.e. imbalance in cluster size. The results showed that divergence rates were substantially higher for data sets with unbalanced cluster sizes – in particular when the model at hand had a complex hierarchical structure. Furthermore, the use of multiple imputation to restore ‘balance’ in unbalanced data sets reduces model convergence problems.     

Nonparametric analysis of interval censored and doubly truncated data

Doubly truncated data appear in a number of applications, including astronomy and survival analysis. For double-truncated data, the lifetime T is observable only when U≤T≤V, where U and V are the left-truncated and right-truncated time, respectively. In some situations, the lifetime T also suffers interval censoring. Using the EM algorithm of Turnbull [The empirical distribution function with arbitrarily grouped censored and truncated data, J. R. Stat. Soc. Ser. B 38 (1976), pp. 290–295] and iterative convex minorant algorithm [P. Groeneboom and J.A. Wellner, Information Bounds and Nonparametric Maximum Likelihood Estimation, Birkhäuser, Basel, 1992], we study the performance of the nonparametric maximum-likelihood estimates (NPMLEs) of the distribution function of T. Simulation results indicate that the NPMLE performs adequately for the finite sample.     

Bayesian prediction based on Pareto doubly censored data

Based on Doubly type II censored data, this paper present Bayesian prediction intervals for future ordered failure times of components whose failure times have the classical Pareto distribution. Two different sampling schemes have been considered. Conjugate priors for either the one or the two-parameter cases are outlined. Illustrative examples and a simulation study are included.     

On goodness-of-fit tests for Aalen's additive model based on left-truncated right-censored or doubly censored data

ABSTRACT

Gandy and Jensen (2005 Gandy, A., Jensen, U. (2005). On goodness-of-fit tests for Aalen's additive risk model. Scan. J. Stat. 32:425–445.[Crossref], [Web of Science ®] , [Google Scholar]) proposed goodness-of-fit tests for Aalen's additive risk model. In this article, we demonstrate that the approach of Gandy and Jensen (2005 Gandy, A., Jensen, U. (2005). On goodness-of-fit tests for Aalen's additive risk model. Scan. J. Stat. 32:425–445.[Crossref], [Web of Science ®] , [Google Scholar]) can be applied to left-truncated right-censored (LTRC) data and doubly censored data. A simulation study is conducted to investigate the performance of the proposed tests. The proposed tests are illustrated using heart transplant data.     

Semiparametric regression estimation for longitudinal data in models with martingale difference error's structure

An inherent characteristic of longitudinal data is the dependence among the observations within the same subject. For exhibiting dependencies among the observations within the same subject, this paper considers a semiparametric partially linear regression model for longitudinal data based on martingale difference error's structure. We establish a strong consistency for the least squares estimator of a parametric component and the estimator of a non-parametric function under some mild conditions. A simulation study shows the performance of the proposed estimator in finite samples.     

Some observations on semi-markov models for partially censored data

Cause-specific hazard functions are employed to analyze a semi-Markov model which could be used to describe data arising from clinical trials or certain types of observational studies. The use of these hazard functions to fit a set of data arising from N possibly incomplete case histories is shown to have several notable advantages over the approach adopted by Lagakos, Sommer, and Zelen (1978).     

Semiparametric regression analysis of doubly censored failure time data from cohort studies

Lifetime Data Analysis - Doubly censored failure time data occur when the failure time of interest represents the elapsed time between two events, an initial event and a subsequent event, and the...     

Semiparametric estimation of employment duration models

There are a variety of economic areas, such as studies of employment duration and of the durability of capital goods, in which data on important variables typically are censored. The standard techinques for estimating a model from censored data require the distributions of unobservable random components of the model to be specified a priori up to a finite set of parameters, and misspecification of these distributions usually leads to inconsistent parameter estimates. However, economic theory rarely gives guidance about distributions and the standard estimation techniques do not provide convenient methods for identifying distributions from censored data. Recently, several distribution-free or semiparametric methods for estimating censored regression models have been developed. This paper presents the results of using two such methods to estimate a model of employment duration. The paper reports the operating characteristics of the semiparametric estimators and compares the semiparametric estimates with those obtained from a standard parametric model.     

Flexible modelling of simultaneously interval censored and truncated time‐to‐event data

This paper deals with the analysis of data from a HET‐CAM^VT experiment. From a statistical perspective, such data yield many challenges. First of all, the data are typically time‐to‐event like data, which are at the same time interval censored and right truncated. In addition, one has to cope with overdispersion as well as clustering. Traditional analysis approaches ignore overdispersion and clustering and summarize the data into a continuous score that can be analysed using simple linear models. In this paper, a novel combined frailty model is developed that simultaneously captures all of the aforementioned statistical challenges posed by the data. Copyright © 2015 John Wiley & Sons, Ltd.     

Modelling hierarchical clustered censored data with the hierarchical Kendall copula

This article proposes a new model for right‐censored survival data with multi‐level clustering based on the hierarchical Kendall copula model of Brechmann (2014) with Archimedean clusters. This model accommodates clusters of unequal size and multiple clustering levels, without imposing any structural conditions on the parameters or on the copulas used at various levels of the hierarchy. A step‐wise estimation procedure is proposed and shown to yield consistent and asymptotically Gaussian estimates under mild regularity conditions. The model fitting is based on multiple imputation, given that the censoring rate increases with the level of the hierarchy. To check the model assumption of Archimedean dependence, a goodness‐of test is developed. The finite‐sample performance of the proposed estimators and of the goodness‐of‐fit test is investigated through simulations. The new model is applied to data from the study of chronic granulomatous disease. The Canadian Journal of Statistics 47: 182–203; 2019 © 2019 Statistical Society of Canada     

Estimation of the bivariate cause-specific distribution function with doubly censored competing risks data

In this article, we consider estimating the bivariate cause-specific distribution function when both components are subject to double censoring. We propose two types of estimators as generalizations of the Dabrowska and Campbell and Földes estimators. The asymptotical properties of the proposed estimators are established. A simulation study is conducted to investigate the performance of the proposed estimators.     

Quantile regression-based Bayesian semiparametric mixed-effects models for longitudinal data with non-normal,missing and mismeasured covariate

Quantile regression (QR) models have received increasing attention recently for longitudinal data analysis. When continuous responses appear non-centrality due to outliers and/or heavy-tails, commonly used mean regression models may fail to produce efficient estimators, whereas QR models may perform satisfactorily. In addition, longitudinal outcomes are often measured with non-normality, substantial errors and non-ignorable missing values. When carrying out statistical inference in such data setting, it is important to account for the simultaneous treatment of these data features; otherwise, erroneous or even misleading results may be produced. In the literature, there has been considerable interest in accommodating either one or some of these data features. However, there is relatively little work concerning all of them simultaneously. There is a need to fill up this gap as longitudinal data do often have these characteristics. Inferential procedure can be complicated dramatically when these data features arise in longitudinal response and covariate outcomes. In this article, our objective is to develop QR-based Bayesian semiparametric mixed-effects models to address the simultaneous impact of these multiple data features. The proposed models and method are applied to analyse a longitudinal data set arising from an AIDS clinical study. Simulation studies are conducted to assess the performance of the proposed method under various scenarios.