Bayesian inference for random coefficient dynamic panel data models

We develop a hierarchical Bayesian approach for inference in random coefficient dynamic panel data models. Our approach allows for the initial values of each unit's process to be correlated with the unit-specific coefficients. We impose a stationarity assumption for each unit's process by assuming that the unit-specific autoregressive coefficient is drawn from a logitnormal distribution. Our method is shown to have favorable properties compared to the mean group estimator in a Monte Carlo study. We apply our approach to analyze energy and protein intakes among individuals from the Philippines.     

Pareto Regression: A Bayesian Analysis

Abstract

In this article, a new model is presented that is based on the Pareto distribution of the second kind, when the location parameter depends on covariates as well as unobserved heterogeneity. Bayesian analysis of the model can be performed using Markov Chain Monte Carlo techniques. The new procedures are illustrated in the context of artificial data as well as international output data.     

A Bayesian random effects model for analyzing mixed negative binomial and continuous longitudinal responses

ABSTRACT

A general Bayesian random effects model for analyzing longitudinal mixed correlated continuous and negative binomial responses with and without missing data is presented. This Bayesian model, given some random effects, uses a normal distribution for the continuous response and a negative binomial distribution for the count response. A Markov Chain Monte Carlo sampling algorithm is described for estimating the posterior distribution of the parameters. This Bayesian model is illustrated by a simulation study. For sensitivity analysis to investigate the change of parameter estimates with respect to the perturbation from missing at random to not missing at random assumption, the use of posterior curvature is proposed. The model is applied to a medical data, obtained from an observational study on women, where the correlated responses are the negative binomial response of joint damage and continuous response of body mass index. The simultaneous effects of some covariates on both responses are also investigated.     

A Bayesian approach for analysing longitudinal nominal outcomes using random coefficients transitional generalized logit model: an application to the labour force survey data

A random-effects transition model is proposed to model the economic activity status of household members. This model is introduced to take into account two kinds of correlations; one due to the longitudinal nature of the study, which will be considered using a transition parameter, and the other due to the existing correlation between responses of members of the same household which is taken into account by introducing random coefficients into the model. The results are presented based on the homogeneous (all parameters are not changed by time) and non-homogeneous Markov models with random coefficients. A Bayesian approach via the Gibbs sampling is used to perform parameter estimation. Results of using random-effects transition model are compared, using deviance information criterion, with those of three other models which exclude random effects and/or transition effects. It is shown that the full model gains more precision due to the consideration of all aspects of the process which generated the data. To illustrate the utility of the proposed model, a longitudinal data set which is extracted from the Iranian Labour Force Survey is analysed to explore the simultaneous effect of some covariates on the current economic activity as a nominal response. Also, some sensitivity analyses are performed to assess the robustness of the posterior estimation of the transition parameters to the perturbations of the prior parameters.     

Quantile regression-based Bayesian semiparametric mixed-effects models for longitudinal data with non-normal,missing and mismeasured covariate

Quantile regression (QR) models have received increasing attention recently for longitudinal data analysis. When continuous responses appear non-centrality due to outliers and/or heavy-tails, commonly used mean regression models may fail to produce efficient estimators, whereas QR models may perform satisfactorily. In addition, longitudinal outcomes are often measured with non-normality, substantial errors and non-ignorable missing values. When carrying out statistical inference in such data setting, it is important to account for the simultaneous treatment of these data features; otherwise, erroneous or even misleading results may be produced. In the literature, there has been considerable interest in accommodating either one or some of these data features. However, there is relatively little work concerning all of them simultaneously. There is a need to fill up this gap as longitudinal data do often have these characteristics. Inferential procedure can be complicated dramatically when these data features arise in longitudinal response and covariate outcomes. In this article, our objective is to develop QR-based Bayesian semiparametric mixed-effects models to address the simultaneous impact of these multiple data features. The proposed models and method are applied to analyse a longitudinal data set arising from an AIDS clinical study. Simulation studies are conducted to assess the performance of the proposed method under various scenarios.     

Bayesian analysis of generalized odds-rate hazards models for survival data

In the analysis of censored survival data Cox proportional hazards model (1972) is extremely popular among the practitioners. However, in many real-life situations the proportionality of the hazard ratios does not seem to be an appropriate assumption. To overcome such a problem, we consider a class of nonproportional hazards models known as generalized odds-rate class of regression models. The class is general enough to include several commonly used models, such as proportional hazards model, proportional odds model, and accelerated life time model. The theoretical and computational properties of these models have been re-examined. The propriety of the posterior has been established under some mild conditions. A simulation study is conducted and a detailed analysis of the data from a prostate cancer study is presented to further illustrate the proposed methodology.     

Bayesian analysis of the Box-Cox transformation model based on left-truncated and right-censored data

In this paper, we discuss the inference problem about the Box-Cox transformation model when one faces left-truncated and right-censored data, which often occur in studies, for example, involving the cross-sectional sampling scheme. It is well-known that the Box-Cox transformation model includes many commonly used models as special cases such as the proportional hazards model and the additive hazards model. For inference, a Bayesian estimation approach is proposed and in the method, the piecewise function is used to approximate the baseline hazards function. Also the conditional marginal prior, whose marginal part is free of any constraints, is employed to deal with many computational challenges caused by the constraints on the parameters, and a MCMC sampling procedure is developed. A simulation study is conducted to assess the finite sample performance of the proposed method and indicates that it works well for practical situations. We apply the approach to a set of data arising from a retirement center.     

Robust Bayesian analysis of loss reserving data using scale mixtures distributions

It is vital for insurance companies to have appropriate levels of loss reserving to pay outstanding claims and related settlement costs. With many uncertainties and time lags inherently involved in the claims settlement process, loss reserving therefore must be based on estimates. Existing models and methods cannot cope with irregular and extreme claims and hence do not offer an accurate prediction of loss reserving. This paper extends the conventional normal error distribution in loss reserving modeling to a range of heavy-tailed distributions which are expressed by certain scale mixtures forms. This extension enables robust analysis and, in addition, allows an efficient implementation of Bayesian analysis via Markov chain Monte Carlo simulations. Various models for the mean of the sampling distributions, including the log-Analysis of Variance (ANOVA), log-Analysis of Covariance (ANCOVA) and state space models, are considered and the straightforward implementation of scale mixtures distributions is demonstrated using OpenBUGS.     

Bayesian analysis of two overdispersed poisson regression models

Shookri and Consul (1989) and Scollnik (1995) have previously considered the Bayesian analysis of an overdispersed generalized Poisson model. Scollnik (1995) also considered the Bayesian analysis of an ordinary Poisson and over-dispersed generalized Poisson mixture model. In this paper, we discuss the Bayesian analysis of these models when they are utilised in a regression context. Markov chain Monte Carlo methods are utilised, and an illustrative analysis is provided.     

Bayesian model averaging in longitudinal regression models with AR(1) errors with application to a myopia data set

We propose a new iterative algorithm, called model walking algorithm, to the Bayesian model averaging method on the longitudinal regression models with AR(1) random errors within subjects. The Markov chain Monte Carlo method together with the model walking algorithm are employed. The proposed method is successfully applied to predict the progression rates on a myopia intervention trial in children.     

Likelihood-based approach for analysis of longitudinal nominal data using marginalized random effects models

Likelihood-based marginalized models using random effects have become popular for analyzing longitudinal categorical data. These models permit direct interpretation of marginal mean parameters and characterize the serial dependence of longitudinal outcomes using random effects [12,22]. In this paper, we propose model that expands the use of previous models to accommodate longitudinal nominal data. Random effects using a new covariance matrix with a Kronecker product composition are used to explain serial and categorical dependence. The Quasi-Newton algorithm is developed for estimation. These proposed methods are illustrated with a real data set and compared with other standard methods.     

Bayesian analysis of contingency tables: a simulation and graphics-based approach

In this paper we present a simulation and graphics-based model checking and model comparison methodology for the Bayesian analysis of contingency tables. We illustrate the approach by testing the hypotheses of independence and symmetry on complete and incomplete simulated tables.     

Consistency of Bayesian linear model selection with a growing number of parameters

Linear models with a growing number of parameters have been widely used in modern statistics. One important problem about this kind of model is the variable selection issue. Bayesian approaches, which provide a stochastic search of informative variables, have gained popularity. In this paper, we will study the asymptotic properties related to Bayesian model selection when the model dimension p is growing with the sample size n. We consider p≤n and provide sufficient conditions under which: (1) with large probability, the posterior probability of the true model (from which samples are drawn) uniformly dominates the posterior probability of any incorrect models; and (2) the posterior probability of the true model converges to one in probability. Both (1) and (2) guarantee that the true model will be selected under a Bayesian framework. We also demonstrate several situations when (1) holds but (2) fails, which illustrates the difference between these two properties. Finally, we generalize our results to include g-priors, and provide simulation examples to illustrate the main results.     

A general class of hierarchical ordinal regression models with applications to correlated roc analysis

The authors discuss a general class of hierarchical ordinal regression models that includes both location and scale parameters, allows link functions to be selected adaptively as finite mixtures of normal cumulative distribution functions, and incorporates flexible correlation structures for the latent scale variables. Exploiting the well‐known correspondence between ordinal regression models and parametric ROC (Receiver Operating Characteristic) curves makes it possible to use a hierarchical ROC (HROC) analysis to study multilevel clustered data in diagnostic imaging studies. The authors present a Bayesian approach to model fitting using Markov chain Monte Carlo methods and discuss HROC applications to the analysis of data from two diagnostic radiology studies involving multiple interpreters.     

Conditional simulation from highly structured Gaussian systems, with application to blocking-MCMC for the Bayesian analysis of very large linear models

This paper examines strategies for simulating exactly from large Gaussian linear models conditional on some Gaussian observations. Local computation strategies based on the conditional independence structure of the model are developed in order to reduce costs associated with storage and computation. Application of these algorithms to simulation from nested hierarchical linear models is considered, and the construction of efficient MCMC schemes for Bayesian inference in high-dimensional linear models is outlined.     

A Bayesian Analysis of Autoregressive Models with Exogenous Variables and Power-Transformed and Threshold GARCH Errors

Consider a class of autoregressive models with exogenous variables and power transformed and threshold GARCH (ARX-PTTGARCH) errors, which is a natural generalization of the standard and special GARCH model. We propose a Bayesian method to show that combining Gibbs sampler and Metropolis-Hastings algorithm to give a Bayesian analysis can be applied to estimate parameters of ARX-PTTGARCH models with success.     

A comparison of Bayesian model selection based on MCMC with an application to GARCH-type models

This paper presents a comprehensive review and comparison of five computational methods for Bayesian model selection, based on MCMC simulations from posterior model parameter distributions. We apply these methods to a well-known and important class of models in financial time series analysis, namely GARCH and GARCH-t models for conditional return distributions (assuming normal and t-distributions). We compare their performance with the more common maximum likelihood-based model selection for simulated and real market data. All five MCMC methods proved reliable in the simulation study, although differing in their computational demands. Results on simulated data also show that for large degrees of freedom (where the t-distribution becomes more similar to a normal one), Bayesian model selection results in better decisions in favor of the true model than maximum likelihood. Results on market data show the instability of the harmonic mean estimator and reliability of the advanced model selection methods.     

Bayesian analysis of screening data: Application to AIDS in blood donors

The rapid increase in the number of AIDS cases during the 1980s and the spread of the disease from the high-risk groups into the general population has created widespread concern. In particular, assessing the accuracy of the screening tests used to detect antibodies to the HIV (AIDS) virus in donated blood and determining the prevalance of the disease in the population are fundamental statistical problems. Because the prevalence of AIDS varies widely by geographic region and data on the number of infected blood donors are published regularly, Bayesian methods, which utilize prior results and update them as new data become available, are quite useful. In this paper we develop a Bayesian procedure for estimating the prevalence of a rare disease, the sensitivity and specificity of the screening tests, and the predictive value of a positive or negative screening test. We apply the procedure to data on blood donors in the United States and in Canada. Our results augment those described in Gastwirth (1987) using classical methods. Indeed, we show that the inclusion of sound prior knowledge into the statistical analysis does not yield sufficiently precise estimates of the predictive value of a positive test. Hence confirmatory testing is needed to obtain reliable estimates. The emphasis of the Bayesian predictive paradigm on prediction intervals for future data yields a valuable insight. We demonstrate that using them might have detected a decline in the specificity of the most frequently used screening test earlier than it apparently was.     

Bayesian variable selection in quantile regression with random effects: an application to Municipal Human Development Index

According to the Atlas of Human Development in Brazil, the income dimension of Municipal Human Development Index (MHDI-I) is an indicator that shows the population''s ability in a municipality to ensure a minimum standard of living to provide their basic needs, such as water, food and shelter. In public policy, one of the research objectives is to identify social and economic variables that are associated with this index. Due to the income inequality, evaluate these associations in quantiles, instead of the mean, could be more interest. Thus, in this paper, we develop a Bayesian variable selection in quantile regression models with hierarchical random effects. In particular, we assume a likelihood function based on the Generalized Asymmetric Laplace distribution, and a spike-and-slab prior is used to perform variable selection. The Generalized Asymmetric Laplace distribution is a more general alternative than the Asymmetric Laplace one, which is a common approach used in quantile regression under the Bayesian paradigm. The performance of the proposed method is evaluated via a comprehensive simulation study, and it is applied to the MHDI-I from municipalities located in the state of Rio de Janeiro.     

Joint modelling of longitudinal response and time-to-event data using conditional distributions: a Bayesian perspective

Over the last 20 or more years a lot of clinical applications and methodological development in the area of joint models of longitudinal and time-to-event outcomes have come up. In these studies, patients are followed until an event, such as death, occurs. In most of the work, using subject-specific random-effects as frailty, the dependency of these two processes has been established. In this article, we propose a new joint model that consists of a linear mixed-effects model for longitudinal data and an accelerated failure time model for the time-to-event data. These two sub-models are linked via a latent random process. This model will capture the dependency of the time-to-event on the longitudinal measurements more directly. Using standard priors, a Bayesian method has been developed for estimation. All computations are implemented using OpenBUGS. Our proposed method is evaluated by a simulation study, which compares the conditional model with a joint model with local independence by way of calibration. Data on Duchenne muscular dystrophy (DMD) syndrome and a set of data in AIDS patients have been analysed.