A Comparison of Procedures for Controlling the False Discovery Rate in the Presence of Small Variance Genes: A Simulation Study

The Significance Analysis of Microarrays (SAM; Tusher et al., 2001 Tusher , V. G. , Tibshirani , R. , Chu , G. ( 2001 ). Significance analysis of microarrys applied to the ionizing radiation response . Proceedings of the National Academy of Sciences 98 : 5116 – 5121 .[Crossref], [PubMed], [Web of Science ®] , [Google Scholar]) method is widely used in analyzing gene expression data while controlling the FDR by using resampling-based procedure in the microarray setting. One of the main components of the SAM procedure is the adjustment of the test statistic. The introduction of the fudge factor to the test statistic aims at deflating the large value of test statistics due to the small standard error of gene-expression. Lin et al. (2008 Lin , D. , Shkedy , Z. , Burzykowski , T. , Göhlmann , H. W. H. , De Bondt , A. , Perera , T. , Geerts , T. , Bijnens , L. ( 2008 ). Significance analysis of microarray (SAM) for comparisons of several treatments with one control . Biometric Journal, MCP 50 ( 5 ): 801 – 823 .[Crossref], [PubMed], [Web of Science ®] , [Google Scholar]) pointed out that the fudge factor does not effectively improve the power and the control of the FDR as compared to the SAM procedure without the fudge factor in the presence of small variance genes. Motivated by the simulation results presented in Lin et al. (2008 Lin , D. , Shkedy , Z. , Burzykowski , T. , Göhlmann , H. W. H. , De Bondt , A. , Perera , T. , Geerts , T. , Bijnens , L. ( 2008 ). Significance analysis of microarray (SAM) for comparisons of several treatments with one control . Biometric Journal, MCP 50 ( 5 ): 801 – 823 .[Crossref], [PubMed], [Web of Science ®] , [Google Scholar]), in this article, we extend our study to compare several methods for choosing the fudge factor in the modified t-type test statistics and use simulation studies to investigate the power and the control of the FDR of the considered methods.     

A Multivariate Threshold Varying Conditional Correlations Model

In this article, a multivariate threshold varying conditional correlation (TVCC) model is proposed. The model extends the idea of Engle (2002 Engle , R. F. ( 2002 ). Dynamic conditional correlation: a simple class of multivariate generalized autoregressive conditional heteroskedasticity models . Journal of Business and Economic Statistics 20 ( 3 ): 339 – 350 .[Taylor & Francis Online], [Web of Science ®] , [Google Scholar]) and Tse and Tsui (2002 Tse , Y. K. , Tsui , A. K. C. ( 2002 ). A multivariate GARCH model with time-varying correlations . Journal of Business and Economic Statistics , July 2002 , 20 ( 3 ): 351 – 362 .[Taylor & Francis Online], [Web of Science ®] , [Google Scholar]) to a threshold framework. This model retains the interpretation of the univariate threshold GARCH model and allows for dynamic conditional correlations. Techniques of model identification, estimation, and model checking are developed. Some simulation results are reported on the finite sample distribution of the maximum likelihood estimate of the TVCC model. Real examples demonstrate the asymmetric behavior of the mean and the variance in financial time series and the ability of the TVCC model to capture these phenomena.     

Aspects of Dependence in Generalized Farlie-Gumbel-Morgenstern Distributions

In this article, we obtained a dependence measure for generalized Farlie-Gumbel-Morgenstern (FGM) family in view of Kochar and Gupta (1987 Kochar , S. G. , Gupta , R. P. ( 1987 ). Competitors of Kendall-tau test for testing independence against PQD . Biometrika 74 ( 3 ): 664 – 669 .[Crossref], [Web of Science ®] , [Google Scholar]) and then compared this measure with Spearman's rho and Kendall's tau in FGM family. Moreover, we evaluated the empirical power of the class of distribution-free tests proposed by Kochar and Gupta (1987 Kochar , S. G. , Gupta , R. P. ( 1987 ). Competitors of Kendall-tau test for testing independence against PQD . Biometrika 74 ( 3 ): 664 – 669 .[Crossref], [Web of Science ®] , [Google Scholar], 1990 Kochar , S. G. , Gupta , R. P. ( 1990 ). Distribution-free tests based on sub-sample extrema for testing against positive dependence . Australian Journal of Statistics 32 : 45 – 51 .[Crossref] , [Google Scholar]) based on exact distribution of a U-statistics. This is derived via a simulation study for sample of sizes n = 6, 8, 10, 12, 16, and 20. Also, we compared our simulation results with those achieved by Amini et al. (2010 Amini , M. , Jabbari , H. , Mohtashami Borzadaran , G. R. , Azadbakhsh , M. ( 2010 ). Power comparison of independence test for the Farlie-Gumbel-Moregenstern family . Communications of the Korean Statistical Society 17 ( 4 ): 493 – 505 .[Crossref] , [Google Scholar]) and Güven and Kotz (2008 Güven , B. , Kotz , S. ( 2008 ). Test of independence for generalized Farlie-Gumbel-Morgenstern distributions . Journal of Computational and Applied Mathematics 212 : 102 – 111 .[Crossref], [Web of Science ®] , [Google Scholar]).     

A side sensitive modified group runs control chart to detect shifts in the process mean

Gadre and Rattihalli [5 Gadre, M. P. and Rattihalli, R. N. 2006. Modified group runs control charts to detect increases in fraction non-conforming and shifts in the process mean. Commun. Stat. Simul. Comput., 35: 225–240. [Taylor & Francis Online], [Web of Science ®] [Google Scholar]] have introduced the Modified Group Runs (MGR) control chart to identify the increases in fraction non-conforming and to detect shifts in the process mean. The MGR chart reduces the out-of-control average time-to-signal (ATS), as compared with most of the well-known control charts. In this article, we develop the Side Sensitive Modified Group Runs (SSMGR) chart to detect shifts in the process mean. With the help of numerical examples, it is illustrated that the SSMGR chart performs better than the Shewhart's X¯ chart, the synthetic chart [12 Wu, Z. and Spedding, T. A. 2000. A synthetic control chart for detecting small shifts in the process mean. J. Qual. Technol., 32: 32–38. [Taylor & Francis Online], [Web of Science ®] [Google Scholar]], the Group Runs chart [4 Gadre, M. P. and Rattihalli, R. N. 2004. A group runs control chart for detecting shifts in the process mean. Econ. Qual. Control, 19: 29–43. [Crossref] [Google Scholar]], the Side Sensitive Group Runs chart [6 Gadre, M. P. and Rattihalli, R. N. 2007. A side sensitive group runs control chart for detecting shifts in the process mean. Stat. Methods Appl., 16: 27–37. [Crossref], [Web of Science ®] [Google Scholar]], as well as the MGR chart [5 Gadre, M. P. and Rattihalli, R. N. 2006. Modified group runs control charts to detect increases in fraction non-conforming and shifts in the process mean. Commun. Stat. Simul. Comput., 35: 225–240. [Taylor & Francis Online], [Web of Science ®] [Google Scholar]]. In some situations it is also superior to the Cumulative Sum chart p9 Page, E. S. 1954. Continuous inspection schemes. Biometrika, 41: 100–114. [Crossref], [Web of Science ®] [Google Scholar]] and the exponentially weighed moving average chart [10 Roberts, S. W. 1959. Control chart tests based on geometric moving averages. Technometrics, 1: 239–250. [Taylor & Francis Online] [Google Scholar]]. In the steady state also, its performance is better than the above charts.     

A Nonparametric Test for the Ordered Alternative Based on Kendall's Correlation Coefficient

Several methods have been developed for testing the ordered alternative. These include the Jonckheere–Terpstra (JT) test (Jonckheere, 1954 Jonckheere , A. R. ( 1954 ). A distribution free k-sample test against ordered alternatives . Biometrika 41 : 133 – 145 .[Crossref], [Web of Science ®] , [Google Scholar]; Terpstra, 1952 Terpstra , T. ( 1952 ). The asymptotic normality and consistency of Kendall's test against trend when ties are present in one ranking . Indigationes Mathematicae 14 : 327 – 333 . [Google Scholar]), a modified JT test (MJT) (Tryon and Hettmansperger, 1987 Tryon , V. P. , Hettmansperger , T. P. ( 1987 ). A class of nonparametric tests for homogeneity against ordered alternatives . Annals of Statistics 1 : 1061 – 1070 . [Google Scholar]), and a test proposed by Terpstra and Magel (TM) (Terpstra and Magel, 2003 Terpstra , J. T. , Magel , R. C. ( 2003 ). A new nonparametric test for the ordered alternative problem . Journal of Nonparametric Statistics 15 : 289 – 301 .[Taylor & Francis Online], [Web of Science ®] , [Google Scholar]), among others. This article proposes a new method for testing the ordered alternative. The proposed test is based on Kendall's tau statistic. The asymptotic distribution of the test statistic is given. A Monte Carlo simulation study is conducted comparing the estimated powers of the proposed test with existing tests under a variety of sample sizes and distributions.     

Bayesian Capture-Recapture Analysis: An Application in Modeling Semelparity of a Neotropical Didelphid Marsupial

We develop a series of Bayesian statistical models for estimating survival of a neotropic didelphid marsupial, the Brazilian gracile mouse opossum (Gracilinanus microtarsus). These models are based on the Cormack–Jolly–Seber model (Cormack, 1964 Cormack , R. M. ( 1964 ). Estimates of survival from the sighting of marked animals . Biometrika 51 : 429 – 438 .[Crossref], [Web of Science ®] , [Google Scholar]; Jolly 1965 Jolly , G. M. ( 1965 ). Explicit estimates from capture-recapture data with both death and immigration stochastic model . Biometrika 52 : 225 – 247 .[Crossref], [PubMed], [Web of Science ®] , [Google Scholar]; Seber 1965 Seber , G. A. F. ( 1965 ). A note on the multiple recapture census . Biometrika 52 : 249 – 259 .[Crossref], [PubMed], [Web of Science ®] , [Google Scholar]) with both survival and recapture rates expressed as a function of covariates using a logit link. The proposed models allow taking into account heterogeneity in capture probability caused by the existence of different groups of individuals in the population. The models were applied to two cohorts (Cohort, 2000, 2001) with the first one including 14 and the second one 15 sampling occasions. The best models for each of the cohorts indicate that G. microtarsus is best described as partially semelparous, a condition in which mortality after the first mating is high but graded over time, with a fraction of males surviving for a second breeding season (Boonstra, 2005 Boonstra , R. ( 2005 ). Equipped for life: the adaptive role of the stress axis in male mammals . Journal of Mammalogy 86 : 236 – 247 .[Crossref], [Web of Science ®] , [Google Scholar]).     

A Broad Class of Partially Specified Autoregressions on Multi-Casting Data

Extending the bifurcating autoregressive (BAR) process (cf. Cowan and Staudte, 1986 Cowan , R. , Staudte , R. G. ( 1986 ). The bifurcating autoregression model in cell lineage studies . Biometrics 42 : 769 – 783 .[Crossref], [PubMed], [Web of Science ®] , [Google Scholar]) to multi-casting (multi-splitting) data, Hwang and Choi (2009 Hwang , S. Y. , Choi , M. S. ( 2009 ). Modeling and large sample estimation for multi-casting autoregression . Statist. Prob. Lett. 79 : 1943 – 1950 .[Crossref], [Web of Science ®] , [Google Scholar]) introduced multi-casting autoregression (MCAR, for short) defined on multi-casting tree structured data. This article is concerned with the case when the MCAR model is partially specified only through conditional mean and variance without directly imposing autoregressive (AR) structure. The resulting class of models will be referred to as P-MCAR (partially specified MCAR). The P-MCAR considerably enlarges the class of multi-casting models including (as special cases) MCAR, random coefficient MCAR, conditionally heteroscedastic multi-casting models and binomial-thinning processes. Moment structures for this broad P-MCAR class are investigated. Least squares (LS) estimation method is discussed and asymptotic relative efficiency (ARE) of the generalized-LS over ordinary-LS is obtained in a closed form. A simulation study is conducted to illustrate results.     

An Improved Solution for Multiple Comparisons with a Control in Response Surface Methodology with Two Predictor Variables

Sa and Edwards (1993 Sa , P. , Edwards , D. ( 1993 ). Multiple comparisons with a control in response surface methodology . Technometrics 35 ( 4 ): 436 – 445 .[Taylor & Francis Online], [Web of Science ®] , [Google Scholar]) first proposed the Multiple Comparisons with a Control problem in Response Surface Methodology. They provided an exact solution for one predictor variable and a conservative solution when number of predictor variables is more than one. Merchant et al. (1998 Merchant , A. , McCann , M. , Edwards , D. ( 1998 ). Improved multiple comparisons with a control in response surface analysis . Technometrics 40 ( 4 ): 291 – 303 .[Crossref], [Web of Science ®] , [Google Scholar]) improved the solution for the latter case. This article improves Merchant et al.'s solution for the case of rotatable designs in two predictor variables.     

On Maximum Likelihood Estimation for the Two Parameter Burr XII Distribution

This article considers three related aspects of maximum likelihood estimation of parameters in the two-parameter Burr XII distribution. Specifically, we first provide further clarification to some limiting results in Wingo (1993 Wingo , D. R. ( 1993 ). Maximum likelihood estimation of Burr XII distribution parameters under Type II censoring . Microelectron. Reliab. 33 : 1251 – 1257 .[Crossref], [Web of Science ®] , [Google Scholar]). We then focus on details in a proof of the uniqueness of the maximum likelihood estimators. Finally, we consider using the likelihood approach for data which does not satisfy Wingo's criterion, and show that this results in fitting either a Pareto distribution or an intuitively sensible degenerate distribution to the data. The discussion here is completely general, and not restricted to data obtained under Type II censoring.     

Estimators for the Population Mean in the Case of Missing Data

We propose a class of estimators for the population mean when there are missing data in the data set. Obtaining the mean square error equations of the proposed estimators, we show the conditions where the proposed estimators are more efficient than the sample mean, ratio-type estimators, and the estimators in Singh and Horn (2000 Singh , S. , Horn , S. ( 2000 ). Compromised imputation in survey sampling . Metrika 51 : 267 – 276 .[Crossref], [Web of Science ®] , [Google Scholar]) and Singh and Deo (2003 Singh , S. , Deo , B. (2003). Imputation by power transformation. Statist. Pap. 44:555–579.[Crossref], [Web of Science ®] , [Google Scholar]) in the case of missing data. These conditions are also supported by a numerical example.     

Confidence Intervals for Linear Function of Variance Components in Two-Fold Nested Random Effects Model

In the article, we consider the unbalanced case of the two-way nested random effects model under partial balance. Using the method of generalized confidence intervals (GCIs) introduced in Weeranhandi (1993 Weeranhandi , S. ( 1993 ). Generalized confidence intervals . J. Amer. Statist. Assoc. 88 : 899 – 905 .[Taylor & Francis Online], [Web of Science ®] , [Google Scholar] 1995 Weeranhandi , S. ( 1995 ). Exact Statistical Methods for Data Analysis . New York : Springer-Verlag . [Google Scholar]), a new method is proposed for constructing confidence intervals on linear function of variance components. To compare the resulted intervals with the Modified Large Sample (MLS) intervals by Hernandez and Burdick (1993 Hernandez , R. P. , Burdick , R. K. ( 1993 ). Confidence intervals on the total variance in unbalanced two-fold nested designs . Biom. J. 35 : 515 – 522 .[Crossref] , [Google Scholar]), a simulation study is conducted. The results indicate that the proposed method performs better than the MLS method, especially for very unbalanced designs.     

On Testing Sample Selection Bias Under the Multicollinearity Problem

ABSTRACT

This paper reviews and extends the literature on the finite sample behavior of tests for sample selection bias. Monte Carlo results show that, when the “multicollinearity problem” identified by Nawata (1993 Nawata , K. ( 1993 ). A note on the estimation of models with sample-selection biases . Economics Letters 42 : 15 – 24 . [CSA] [CROSSREF] [Crossref], [Web of Science ®] , [Google Scholar]) is severe, (i) the t-test based on the Heckman–Greene variance estimator can be unreliable, (ii) the Likelihood Ratio test remains powerful, and (iii) nonnormality can be interpreted as severe sample selection bias by Maximum Likelihood methods, leading to negative Wald statistics. We also confirm previous findings (Leung and Yu, 1996 Leung , S. F. , Yu , S. ( 1996 ). On the choice between sample selection and two-part models . Journal of Econometrics 72 : 197 – 229 . [CSA] [CROSSREF] [Crossref], [Web of Science ®] , [Google Scholar]) that the standard regression-based t-test (Heckman, 1979 Heckman , J. J. ( 1979 ). Sample selection bias as a specification error . Econometrica 47 : 153 – 161 . [CSA] [Crossref], [Web of Science ®] , [Google Scholar]) and the asymptotically efficient Lagrange Multiplier test (Melino, 1982 Melino , A. ( 1982 ). Testing for sample selection bias . Review of Economic Studies 49 : 151 – 153 . [CSA] [Crossref], [Web of Science ®] , [Google Scholar]), are robust to nonnormality but have very little power.     

Performance Evaluation of Different Tests for Location Parameters

In this article, our objective is to evaluate the performance of different tests which are used to compare the equality of more than two location parameters. We have considered six tests (including some commonly used) in this study, one of which is parametric and the others are nonparametric. These tests include the usual F test (Fisher and Mackenzie, 1923 Fisher , R. A. , Mackenzie , M. A. ( 1923 ). Studies in crop variation. II. The manurial response of different potato . Journal of Agricultural Science 13 : 311 – 320 .[Crossref], [Web of Science ®] , [Google Scholar]), Kruskal–Wallis test (Kruskall and Wallis, 1952 Kruskall , W. H. , Wallis , W. A. ( 1952 ). Use of ranks in one-criterion variance analysis . Journal of American Statistical Association 47 : 583 – 621 .[Taylor & Francis Online], [Web of Science ®] , [Google Scholar]), Kolmogorov–Smirnov test (David, 1958 David , H. T. ( 1958 ). Three-sample Kolnogorov–Smirnov test . The Annals of Mathematical Statistics 29 : 842 – 851 .[Crossref] , [Google Scholar]), the g test (Stekler, 1987 Stekler , H. O. ( 1987 ). Who forecasters better? Journal of Business and Economic Statistics 5 : 155 – 158 .[Taylor & Francis Online], [Web of Science ®] , [Google Scholar]), f test (Batchelor, 1990 Batchelor , R. A. ( 1990 ). All forecasters are equal . Journal of Business and Economic Statistics 8 : 143 – 144 .[Taylor & Francis Online], [Web of Science ®] , [Google Scholar]), and Extension of Median test (as given in Daniel, 1990 Daniel , W. W. ( 1990 ). Applied Nonparametric Statistics. , 2nd ed. Duxbury Classic Series , Boston . [Google Scholar]). Performance of these tests are compared under different symmetric, skewed and contaminated probability distributions that include Normal, Cauchy, Uniform, Laplace, Lognormal, Exponential, Weibull, Gamma, t, Chi-square, Half Normal, Mixed Weibull, and Mixed Normal. Performances of these tests are measured in terms of power. We have suggested appropriate tests which may perform better under different situations. It is expected that researchers will find these results useful in decision making.     

Goodness-of-Fit Test and Parameter Estimation for a Proportional Odds Model of Random Censorship

Censored data arise naturally in a number of fields, particularly in problems of reliability and survival analysis. There are several types of censoring, in this article, we will confine ourselves to the right randomly censoring type. Recently, Ahmadi et al. (2010 Ahmadi , J. , Doostparast , M. , Parsian , A. ( 2010 ). Bayes estimation based on random censored data for some life time models under symmetric and asymmetric loss functions . Communcations in Statistics-Theory and Methods , 39 : 3058 – 3071 .[Taylor & Francis Online], [Web of Science ®] , [Google Scholar]) considered the problem of estimating unknown parameters in a general framework based on the right randomly censored data. They assumed that the survival function of the censoring time is free of the unknown parameter. This assumption is sometimes inappropriate. In such cases, a proportional odds (PO) model may be more appropriate (Lam and Leung, 2001 Lam , K. F. , Leung , T. L. ( 2001 ). Marginal likelihood estimation for proportional odds models with right censored data . Lifetime Data Analysis 7 : 39 – 54 .[Crossref], [PubMed], [Web of Science ®] , [Google Scholar]). Under this model, in this article, point and interval estimations for the unknown parameters are obtained. Since it is important to check the adequacy of models upon which inferences are based (Lawless, 2003 Lawless , J. F. (2003). Statistical Models and Methods for Lifetime Data. , 2nd ed. New York : John Wiley & Sons. [Google Scholar], p. 465), two new goodness-of-fit tests for PO model based on right randomly censored data are proposed. The proposed procedures are applied to two real data sets due to Smith (2002 Smith , P. J. ( 2002 ). Analysis of Failure and Survival Data . London : Chapman & Hall, CRC . [Google Scholar]). A Monte Carlo simulation study is conducted to carry out the behavior of the estimators obtained.     

Bias-Corrected Maximum Likelihood Estimators in Nonlinear Heteroscedastic Models

Nonlinear heteroscedastic models are widely used in econometrics and statistical applications. We derive matrix formulae for the second-order biases of the maximum likelihood estimators of the parameters in the mean and variance response which generalize previous results by Cook et al. (1986 Cook , D. R. , Tsai , C. L. , Wei , B. C. ( 1986 ). Bias in nonlinear regression . Biometrika 73 : 615 – 623 .[Crossref], [Web of Science ®] , [Google Scholar]) and Cordeiro (1993 Cordeiro , G. M. ( 1993 ). Bartlett corrections and bias correction for two heteroscedastic regression models . Commun. Statist. Theor. Meth. 22 : 169 – 188 .[Taylor & Francis Online], [Web of Science ®] , [Google Scholar]). The biases of the estimators are easily obtained as vectors of regression coefficients from suitable weighted linear regressions. The practical use of such biases is illustrated in a simulation study and in an application to a real data set.     

Nonnested Testing for Competing Autoregressive Dynamic Models Estimated by Instrumental Variables

In this work we investigate nonnested tests for two competing univariate dynamic linear models with autoregressive disturbances, where the motivation for instrumental variable estimation is mainly due to the recognized presence of current endogenous variables in the regression function, either in one or both models. As the previous transformation of both models yields regression functions which are nonlinear in the parameters, the attractive Gauss-Newton regression (GNR) approach, firstly advocated by Davidson and Mackinnon (1981 Davidson , R. , Mackinnon , J. G. ( 1981 ). Several tests for model specification in the presence of alternative hypotheses . Econometrica 49 : 781 – 93 .[Crossref], [Web of Science ®] , [Google Scholar]), will be used to obtain the results.     

Improved Predictive Inference for Responses Based on Location Parameter Median from the Rayleigh Model Given a Doubly Censored Sample

The purpose of this article is to investigate the predictive inference for responses from the location parameter mean as well as from the median given a doubly censored sample from the two-parameter Rayleigh model. The predictive results by Khan et al. (2010 Khan , H. M. R. , Provost , S. B. , Ashima , S. ( 2010 ). Predictive Inference from a Two-Parameter Rayleigh Life Model Given a Doubly Censored Sample . Commun. Statist. Theor. Meth. 39 ( 7 ): 1237 – 1246 .[Taylor & Francis Online], [Web of Science ®] , [Google Scholar]) are used to obtain the predictive inference for responses from the median, where Khan et al. (2010 Khan , H. M. R. , Provost , S. B. , Ashima , S. ( 2010 ). Predictive Inference from a Two-Parameter Rayleigh Life Model Given a Doubly Censored Sample . Commun. Statist. Theor. Meth. 39 ( 7 ): 1237 – 1246 .[Taylor & Francis Online], [Web of Science ®] , [Google Scholar]) obtained the future estimates from the mean. A numerical example representing 66 liver cancer patients is used for predictive analysis. It is concluded that the predictive inference from the median gives precise results as compared with the location parameter mean.     

Skewing and Generalized Jackknifing in Kernel Density Estimation

Abstract

Kernel methods are very popular in nonparametric density estimation. In this article we suggest a simple estimator which reduces the bias to the fourth power of the bandwidth, while the variance of the estimator increases only by at most a moderate constant factor. Our proposal turns out to be a fourth order kernel estimator and may be regarded as a new version of the generalized jackknifing approach (Schucany W. R., Sommers, J. P. (1977 Schucany, W. R. and Sommers, J. P. 1977. Improvement of kernel type estimators. Journal of the American Statistical Association, 72: 420–423. [Taylor & Francis Online], [Web of Science ®] , [Google Scholar]). Improvement of Kernal type estimators. Journal of the American Statistical Association 72:420–423.) applied to kernel density estimation.     

The Identification of Potential Longitudinal Biomarkers and Measurements of Effectiveness for Biomarkers as Surrogates in Multivariate Survival Data

A proposed method based on frailty models is used to identify longitudinal biomarkers or surrogates for a multivariate survival. This method is an extention of earlier models by Wulfsohn and Tsiatis (1997 Wulfsohn , M. S. , Tsiatis , A. A. ( 1997 ). A joint model for survival and longitudinal data measured with error . Biometrics 53 ( 1 ): 330 – 339 .[Crossref], [PubMed], [Web of Science ®] , [Google Scholar]) and Song et al. (2002 Song , X. , Davidian , M. , Tsiatis , A. A. ( 2002 ). A Semiparametric likelihood approach to joint modeling of longitudinal and time-to-event data . Biometrics 58 ( 4 ): 742 – 753 .[Crossref], [PubMed], [Web of Science ®] , [Google Scholar]). In this article, similar to Henderson et al. (2002 Henderson , R. , Diggle , P. J. , Dobson , A. ( 2002 ). Identification and efficacy of longitudinal markers for survival . Biostatistics 3 ( 1 ): 33 – 50 .[Crossref], [PubMed], [Web of Science ®] , [Google Scholar]), a joint likelihood function combines the likelihood functions of the longitudinal biomarkers and the multivariate survival times. We use simulations to explore how the number of individuals, the number of time points per individual and the functional form of the random effects from the longitudianl biomarkers influence the power to detect the association of a longitudinal biomarker and the multivariate survival time. The proposed method is illustrate by using the gastric cancer data.     

Computing the Exact Fisher Information Matrix of Periodic State-Space Models

The purpose of this article is to develop algorithms for computing the exact Fisher information matrix of periodic time-varying state-space models. We first present a relatively simple recursive algorithm which computes the elements of the exact information matrix without involving numerical differentiation, since all required derivatives are analytically evaluated. The proposed algorithm extends the procedure due to Cavanaugh and Shumway (1996 Cavanaugh , J. E. , Shumway , R. H. ( 1996 ). On computing the expected Fisher information matrix for state-space model parameters . Statist. Probab. Lett. 26 : 347 – 355 .[Crossref], [Web of Science ®] , [Google Scholar]) to the periodic state-space framework. Exploiting the approach used in Klein et al. (2000 Klein , A. , Mélard , G. , Zahaf , T. ( 2000 ). Construction of the exact Fisher information matrix of Gaussian time series models by means of matrix differential rules . Linear Alg. Applic. 321 : 209 – 232 .[Crossref], [Web of Science ®] , [Google Scholar]), a second algorithm is proposed in order to obtain the exact information matrix as a whole instead of element by element. The algorithms are first developed in a general framework and then specialized to the case of a periodic Gaussian vector autoregressive moving-average (PVARMA) model.