A-Optimal Block Designs with Additional Singly Replicated Treatments

Block designs to which have been added a number of singly-replicated treatments, known as secondary treatments, are particularly useful for experiments where only small amounts of material are available for some treatments, for example new plant varieties. The designs are of particular use in the microarray situation. Such designs are known as 'augmented designs'. This paper obtains the properties of these designs and shows that, with an equal number of secondary treatments in each block, the A-optimal design is obtained by using the A-optimal design for the original block design. It develops formulae for the variance of treatment comparisons, for both the primary and the secondary treatments. A number of examples are used to illustrate the results.     

Construction of Balanced Incomplete Block Designs Using Cyclic Shifts

Balanced incomplete block designs (BIBDs) play important role in design of experiments, especially in field experiments. These designs ensure that treatments are compared with equal precision. Several methods are available in the literature to construct BIBDs but in this article some infinite series of these designs are presented by method of cyclic shifts. This method expresses some standard properties of a design just through examining the sets of shifts rather than studying the whole design.     

EFFICIENT BLOCK DESIGNS FOR CORRELATED OBSERVATIONS

Current methods for the design of efficient incomplete block experiments when the observations within a block are dependent usually involve computer searches of binary designs. These searches give little insight into the features that lead to efficiency, and can miss more efficient designs. This paper aims to develop some approximations which give some insight into the features of a design that lead to high efficiency under a generalized least-squares analysis for a known dependence structure, and to show that non-binary designs can be more efficient for some dependence structures. In particular, we show how neighbour balance and end plot balance are related to the design efficiency for low-order autoregressions, and that under moderate positive dependence, replication at lag two can sometimes increase efficiency.     

Orthogonal three-level parallel flats designs for user-specified resolution

Orthogonal factorial and fractional factorial designs are very popular in many experimental studies, particularly the two-level and three-level designs used in screening experiments. When an experimenter is able to specify the set of possibly nonnegligible factorial effects, it is sometimes possible to obtain an orthogonal design belonging to the class of parallel flats designs, that has a smaller run-size than a suitable design from the class of classical fractional factorial designs belonging to the class of single flat designs. Sri-vastava and Li (1996) proved a fundamental theorem of orthogonal s-level, s being a prime, designs of parallel flats type for the user-specified resolution. They also tabulated a series of orthogonal designs for the two-level case. No orthogonal designs for three-level case are available in their paper. In this paper, we present a simple proof for the theorem given in Srivastava and Li (1996) for the three-level case. We also give a dual form of the theorem, which is more useful for developing an algorithm for construction of orthogonal designs. Some classes of three-level orthogonal designs with practical run-size are given in the paper.     

t-Latinized Designs

A variety trial sometimes requires a resolvable block design in which the replicates are set out next to each other. The long blocks running through the replicates are then of interest. A t -latinized design is one in which groups of these t long blocks are binary. In this paper examples of such designs are given. It is shown that the algorithm described by John & Whitaker (1993) can be used to construct designs with high average efficiency factors. Upper bounds on these efficiency factors are also derived.     

Orthogonally Blocked Mixture Experiments in Ellipsoidal Restricted Regions

In practical situations involving mixtures formed from several ingredients, interest is sometimes centered on the response in an ellipsoidal neighborhood around a standard formulation. We show that standard, orthogonally blocked, response surface designs, defined on a q ? 1 dimensional unit sphere, may be transformed into similarly orthogonally blocked q-ingredient mixture designs defined within an ellipsoid centered at the standard formulation. The method is illustrated using several examples of mixture experiments with three, four, and five ingredients, arranged in two, three, or four orthogonal blocks, obtained by projecting standard central composite designs and Box–Behnken designs into the ellipsoidal mixture region. Rotations of the resulting designs within the ellipsoidal regions are also considered.     

Projection designs for mixture experiments in orthogonal blocks

Mixture experiments are often carried out in the presence of process variables, such as days of the week or different machines in a manufacturing process, or different ovens in bread and cake making. In such experiments it is particularly useful to be able to arrange the design in orthogonal blocks, so that the model in tue mixture vanauies may ue iitteu inucpenuentiy or tne UIOCK enects mtrouuceu to take account of the changes in the process variables. It is possible in some situations that some of the ingredients in the mixture, such as additives or flavourings, are present in soian quantities, pernaps as iuw a.s 5% ur even !%, resulting in the design space being restricted to only part of the mixture simplex. Hau and Box (1990) discussed the construction of experimental designs for situations where constraints are placed on the design variables. They considered projecting standard response surface designs, including factorial designs and central composite designs, into the restricted design space, and showed that the desirable property of block orthogonality is preserved by the projections considered. Here we present a number of examples of projection designs and illustrate their use when some of the ingredients are restricted to small values, such that the design space is restricted to a sub-region within the usual simplex in the mixture variables.     

Near-optimal designs for dual channel microarray studies

Summary.  Much biological and medical research employs microarray studies to monitor gene expression levels across a wide range of organisms and under many experimental conditions. Dual channel microarrays are a common platform and allow two samples to be measured simultaneously. A frequently used design uses a common reference sample to make conditions across different arrays comparable. Our aim is to formulate microarray experiments in the experimental design context and to use simulated annealing to search for near-optimal designs. We identify a subclass of designs, the so-called interwoven loop designs, that seems to have good optimality properties compared with the near-optimal designs that are found by simulated annealing. Commonly used reference designs and dye swap designs are shown to be highly inefficient.     

On Kronecker block designs for factorial experiments

In this paper the use of Kronecker designs for factorial experiments is considered. The two-factor Kronecker design is considered in some detail and the efficiency factors of the main effects and interaction in such a design are derived. It is shown that the efficiency factor of the interaction is at least as large as the product of the efficiency factors of the two main effects and when both the component designs are totally balanced then its efficiency factor will be higher than the efficiency factor of either of the two main effects. If the component designs are nearly balanced then its efficiency factor will be approximately at least as large as the efficiency factor of either of the two main effects. It is argued that these designs are particularly useful for factorial experiments.Extensions to the multi-factor design are given and it is proved that the two-factor Kronecker design will be connected if the component designs are connected.     

On The Optimal Choice of Cube and Star Replications in Restricted Second-Order Designs

This article examines the central composite design in which some of the experimental runs are replicated. Three different classes of N-point designs are compared using the criterion of Schur's ordering under orthogonality, rotatablity, and slope- rotatablity conditions. The response surface designs with the star portion replicated seem to have more potential than others under orthogonality condition, while the designs with the cube portion replicated is preferable to the designs with their star portion or only the center point replicated under rotatable and slope-rotatable conditions.     

Balanced 2m factorial designs of resolution v which allow search and estimation of one extra unknown effect, 4 ≤ m ≤ 8

In this paper, we obtain balanced resolution V plans for 2^m factorial experiments (4 ≤ m ≤ 8), which have an additional feature. Instead of assuming that the three factor and higher order effects are all zero, we assume that there is at most one nonnegligible effect among them; however, we do not know which particular effect is nonnegligible. The problem is to search which effect is non-negligible and to estimate it, along with estimating the main effects and two factor interactions etc., as in an ordinary resolution V design. For every value of N (the number of treatments) within a certain practical range, we present a design using which the search and estimation can be carried out. (Of course, as in all statistical problems, the probability of correct search will depend upon the size of “error” or “noise” present in the observations. However, the designs obtained are such that, at least in the noiseless case, this probability equals 1.) It is found that many of these designs are identical with optimal balanced resolution V designs obtained earlier in the work of Srivastava and Chopra.     

Partially efficiency-balanced designs-II

efficiency balanced (£R) and partially efficiency balanced (PEB) designs were studied hy Calinski (1971) and Puri and Higam (1971, 1977a). In tais paper we have studied the dual desinas of two classes of PEB designs. It is shown that the dual of any symmetrical PCS design with HN'=N'H is again a PEB design. Also the dual of a PEB(S) with μ₁ = 0 μ₂ = 0and is shown to the again a PEB(S). The relations between PEB designs and linked and partially linked blocks have heen established. As a conseguence, the analysis of linked Mock and partially linkei block designs can he sinrlififid. Sore useful classes of supplencntcd block designs having simple analysis have also been discussed.     

PARTIALLY EQUINEIGHBOURED DESIGNS

This paper presents further results on a class of designs called equineighboured designs, ED. These designs are intended for field and related experiments, especially whenever there is evidence that observations in the same block are correlated. An ED has the property that every unordered pair of treatments occurs as nearest neighbours equally frequently at each level. Ipinyomi (1986) has defined and shown that ED are balanced designs when neighbouring observations are correlated. He has also presented ED as a continuation of the development of optimal block designs. An ED would often require many times the number of experimental materials needed for the construction of an ordinary balanced incomplete block, BIB, design for the same number of treatments and block sizes. Thus for a relatively large number of treatments and block sizes the required minimum number of blocks may be excessively large for practical use of ED. In this paper we shall define and examine partially equineighboured designs with n concurrences, PED (n), as alternatives where ED are practically unachievable. Particular attention will be given to designs with smaller numbers of blocks and for which only as little balance as possible may be lost.     

A new extension strategy on three-level factorials under wrap-around L2-discrepancy

Sequential experiment is an indispensable strategy and is applied immensely to various fields of science and engineering. In such experiments, it is desirable that a given design should retain the properties as much as possible when few runs are added to it. The designs based on sequential experiment strategy are called extended designs. In this paper, we have studied theoretical properties of such experimental strategies using uniformity measure. We have also derived a lower bound of extended designs under wrap-around L₂-discrepancy measure. Moreover, we have provided an algorithm to construct uniform (or nearly uniform) extended designs. For ease of understanding, some examples are also presented and a lot of sequential strategies for a 27-run original design are tabulated for practice.     

Families of proper generalized neighbor designs

A generalized neighbor design relaxes the equality condition on the number of times two treatments occur as neighbors in the design. In this article we have constructed a new series of generalized neighbor designs with equal block sizes, a series of neighbor designs of Rees [1967. Some designs of use in serology. Biometrics 23, 779–791] and a series of neighbor designs with two distinct block sizes. Two more new series of GN₂ designs are also constructed for even number of treatments. It has been shown that quasi neighbor designs introduced by Preece [1994. Balanced Ouchterlony neighbor designs. J. Combin. Math. Combin. Comput. 15, 197–219] are special cases of generalized neighbor designs with t=2$t=2$. All the designs given here are binary. A new definition—partially balanced circuit design is introduced which is a special case of generalized neighbor designs with binary blocks.     

Three Parallel Flats Designs for Two-level Factorial Experiments

This paper investigates the properties of the class of three parallel flats designs for two-level factorial experiments. It shows that the designs constructed from this class of designs can have a very simple correlation structure. The correlation of any pair of best linear unbiased estimators of factorial effects is 0, ⅓ or ¼. Furthermore, the designs obtained also have high D-efficiency. Finally, a class of designs is generated with run-size N = 12 to illustrate the use of the theorem.     

Fourth order rotatability

Fourth order rotatable designs are discussed. A general k, design moment inequality is given. The variance function for two-factor designs is derived, and plotted for a specific design. A minimum point set requirement for two-factor designs is established, thus enabling one to form an infinity of such designs. Some difficulties in obtaining deLigns for k>2 are described. Some questions are posed for future work.     

Optimal block designs for triallel cross experiments

Optimal block designs for a certain type of triallel cross experiments are investigated. Nested balanced block designs are introduced and it is shown how these designs give rise to optimal designs for triallel crosses. Several .series of nested balanced block designs, leading to optimal designs for triallel crosses are reported.     

Some new augmented fractional Box–Behnken designs

The augmented Box–Behnken designs are used in the situations in which Box–Behnken designs (BBDs) could not estimate the response surface model due to the presence of third-order terms in the response surface models. These designs are too large for experimental use. Usually experimenters prefer small response surface designs in order to save time, cost, and resources; therefore, using combinations of fractional BBD points, factorial design points, axial design points, and complementary design points, we augment these designs and develop new third-order response surface designs known as augmented fractional BBDs (AFBBDs). These AFBBDs have less design points and are more efficient than augmented BBDs.     

De-aliasing effects using semifoldover techniques

Semifoldover designs, obtained by semifolding a regular two-level factorial design, have been discussed recently in the literature. In this article, with the use of indicator functions, we investigate various semifoldover designs that are obtained from a general two-level factorial design. We discuss when a main factor or a two-factor interaction can be de-aliased from their aliased two-factor interactions, and extend some of the existing results from regular designs to non-regular designs. Finally, we present some examples to illustrate the results developed here.