Bayesian Semiparametric Modelling in Quantile Regression

Abstract. We propose a Bayesian semiparametric methodology for quantile regression modelling. In particular, working with parametric quantile regression functions, we develop Dirichlet process mixture models for the error distribution in an additive quantile regression formulation. The proposed non‐parametric prior probability models allow the shape of the error density to adapt to the data and thus provide more reliable predictive inference than models based on parametric error distributions. We consider extensions to quantile regression for data sets that include censored observations. Moreover, we employ dependent Dirichlet processes to develop quantile regression models that allow the error distribution to change non‐parametrically with the covariates. Posterior inference is implemented using Markov chain Monte Carlo methods. We assess and compare the performance of our models using both simulated and real data sets.     

Bayesian composite quantile regression

One advantage of quantile regression, relative to the ordinary least-square (OLS) regression, is that the quantile regression estimates are more robust against outliers and non-normal errors in the response measurements. However, the relative efficiency of the quantile regression estimator with respect to the OLS estimator can be arbitrarily small. To overcome this problem, composite quantile regression methods have been proposed in the literature which are resistant to heavy-tailed errors or outliers in the response and at the same time are more efficient than the traditional single quantile-based quantile regression method. This paper studies the composite quantile regression from a Bayesian perspective. The advantage of the Bayesian hierarchical framework is that the weight of each component in the composite model can be treated as open parameter and automatically estimated through Markov chain Monte Carlo sampling procedure. Moreover, the lasso regularization can be naturally incorporated into the model to perform variable selection. The performance of the proposed method over the single quantile-based method was demonstrated via extensive simulations and real data analysis.     

Bayesian quantile regression for hierarchical linear models

The paper proposes a Bayesian quantile regression method for hierarchical linear models. Existing approaches of hierarchical linear quantile regression models are scarce and most of them were not from the perspective of Bayesian thoughts, which is important for hierarchical models. In this paper, based on Bayesian theories and Markov Chain Monte Carlo methods, we introduce Asymmetric Laplace distributed errors to simulate joint posterior distributions of population parameters and across-unit parameters and then derive their posterior quantile inferences. We run a simulation as the proposed method to examine the effects on parameters induced by units and quantile levels; the method is also applied to study the relationship between Chinese rural residents' family annual income and their cultivated areas. Both the simulation and real data analysis indicate that the method is effective and accurate.     

Estimation in a change-point non linear quantile model

This paper considers a non linear quantile model with change-points. The quantile estimation method, which as a particular case includes median model, is more robust with respect to other traditional methods when model errors contain outliers. Under relatively weak assumptions, the convergence rate and asymptotic distribution of change-point and of regression parameter estimators are obtained. Numerical study by Monte Carlo simulations shows the performance of the proposed method for non linear model with change-points.     

Bayesian inference for sinh-normal/independent nonlinear regression models

Sinh-normal/independent distributions are a class of symmetric heavy-tailed distributions that include the sinh-normal distribution as a special case, which has been used extensively in Birnbaum–Saunders regression models. Here, we explore the use of Markov Chain Monte Carlo methods to develop a Bayesian analysis in nonlinear regression models when Sinh-normal/independent distributions are assumed for the random errors term, and it provides a robust alternative to the sinh-normal nonlinear regression model. Bayesian mechanisms for parameter estimation, residual analysis and influence diagnostics are then developed, which extend the results of Farias and Lemonte [Bayesian inference for the Birnbaum-Saunders nonlinear regression model, Stat. Methods Appl. 20 (2011), pp. 423-438] who used the Sinh-normal/independent distributions with known scale parameter. Some special cases, based on the sinh-Student-t (sinh-St), sinh-slash (sinh-SL) and sinh-contaminated normal (sinh-CN) distributions are discussed in detail. Two real datasets are finally analyzed to illustrate the developed procedures.     

A weighted linear quantile regression

In this article, we introduce a new weighted quantile regression method. Traditionally, the estimation of the parameters involved in quantile regression is obtained by minimizing a loss function based on absolute distances with weights independent of explanatory variables. Specifically, we study a new estimation method using a weighted loss function with the weights associated with explanatory variables so that the performance of the resulting estimation can be improved. In full generality, we derive the asymptotic distribution of the weighted quantile regression estimators for any uniformly bounded positive weight function independent of the response. Two practical weighting schemes are proposed, each for a certain type of data. Monte Carlo simulations are carried out for comparing our proposed methods with the classical approaches. We also demonstrate the proposed methods using two real-life data sets from the literature. Both our simulation study and the results from these examples show that our proposed method outperforms the classical approaches when the relative efficiency is measured by the mean-squared errors of the estimators.     

Stochastic volatility in mean models with scale mixtures of normal distributions and correlated errors: A Bayesian approach

A stochastic volatility in mean model with correlated errors using the symmetrical class of scale mixtures of normal distributions is introduced in this article. The scale mixture of normal distributions is an attractive class of symmetric distributions that includes the normal, Student-t, slash and contaminated normal distributions as special cases, providing a robust alternative to estimation in stochastic volatility in mean models in the absence of normality. Using a Bayesian paradigm, an efficient method based on Markov chain Monte Carlo (MCMC) is developed for parameter estimation. The methods developed are applied to analyze daily stock return data from the São Paulo Stock, Mercantile & Futures Exchange index (IBOVESPA). The Bayesian predictive information criteria (BPIC) and the logarithm of the marginal likelihood are used as model selection criteria. The results reveal that the stochastic volatility in mean model with correlated errors and slash distribution provides a significant improvement in model fit for the IBOVESPA data over the usual normal model.     

Bayesian spectral analysis models for quantile regression with Dirichlet process mixtures

This paper presents a Bayesian analysis of partially linear additive models for quantile regression. We develop a semiparametric Bayesian approach to quantile regression models using a spectral representation of the nonparametric regression functions and the Dirichlet process (DP) mixture for error distribution. We also consider Bayesian variable selection procedures for both parametric and nonparametric components in a partially linear additive model structure based on the Bayesian shrinkage priors via a stochastic search algorithm. Based on the proposed Bayesian semiparametric additive quantile regression model referred to as BSAQ, the Bayesian inference is considered for estimation and model selection. For the posterior computation, we design a simple and efficient Gibbs sampler based on a location-scale mixture of exponential and normal distributions for an asymmetric Laplace distribution, which facilitates the commonly used collapsed Gibbs sampling algorithms for the DP mixture models. Additionally, we discuss the asymptotic property of the sempiparametric quantile regression model in terms of consistency of posterior distribution. Simulation studies and real data application examples illustrate the proposed method and compare it with Bayesian quantile regression methods in the literature.     

Estimation and variable selection for partially functional linear models

In this paper, a new estimation procedure based on composite quantile regression and functional principal component analysis (PCA) method is proposed for the partially functional linear regression models (PFLRMs). The proposed estimation method can simultaneously estimate both the parametric regression coefficients and functional coefficient components without specification of the error distributions. The proposed estimation method is shown to be more efficient empirically for non-normal random error, especially for Cauchy error, and almost as efficient for normal random errors. Furthermore, based on the proposed estimation procedure, we use the penalized composite quantile regression method to study variable selection for parametric part in the PFLRMs. Under certain regularity conditions, consistency, asymptotic normality, and Oracle property of the resulting estimators are derived. Simulation studies and a real data analysis are conducted to assess the finite sample performance of the proposed methods.     

Regularized Bayesian quantile regression

A number of nonstationary models have been developed to estimate extreme events as function of covariates. A quantile regression (QR) model is a statistical approach intended to estimate and conduct inference about the conditional quantile functions. In this article, we focus on the simultaneous variable selection and parameter estimation through penalized quantile regression. We conducted a comparison of regularized Quantile Regression model with B-Splines in Bayesian framework. Regularization is based on penalty and aims to favor parsimonious model, especially in the case of large dimension space. The prior distributions related to the penalties are detailed. Five penalties (Lasso, Ridge, SCAD0, SCAD1 and SCAD2) are considered with their equivalent expressions in Bayesian framework. The regularized quantile estimates are then compared to the maximum likelihood estimates with respect to the sample size. A Markov Chain Monte Carlo (MCMC) algorithms are developed for each hierarchical model to simulate the conditional posterior distribution of the quantiles. Results indicate that the SCAD0 and Lasso have the best performance for quantile estimation according to Relative Mean Biais (RMB) and the Relative Mean-Error (RME) criteria, especially in the case of heavy distributed errors. A case study of the annual maximum precipitation at Charlo, Eastern Canada, with the Pacific North Atlantic climate index as covariate is presented.     

Efficient estimation for time-varying coefficient longitudinal models

For estimation of time-varying coefficient longitudinal models, the widely used local least-squares (LS) or covariance-weighted local LS smoothing uses information from the local sample average. Motivated by the fact that a combination of multiple quantiles provides a more complete picture of the distribution, we investigate quantile regression-based methods to improve efficiency by optimally combining information across quantiles. Under the working independence scenario, the asymptotic variance of the proposed estimator approaches the Cramér–Rao lower bound. In the presence of dependence among within-subject measurements, we adopt a prewhitening technique to transform regression errors into independent innovations and show that the prewhitened optimally weighted quantile average estimator asymptotically achieves the Cramér–Rao bound for the independent innovations. Fully data-driven bandwidth selection and optimal weights estimation are implemented through a two-step procedure. Monte Carlo studies show that the proposed method delivers more robust and superior overall performance than that of the existing methods.     

Bayesian quantile regression for skew-normal linear mixed models

Linear mixed models have been widely used to analyze repeated measures data which arise in many studies. In most applications, it is assumed that both the random effects and the within-subjects errors are normally distributed. This can be extremely restrictive, obscuring important features of within-and among-subject variations. Here, quantile regression in the Bayesian framework for the linear mixed models is described to carry out the robust inferences. We also relax the normality assumption for the random effects by using a multivariate skew-normal distribution, which includes the normal ones as a special case and provides robust estimation in the linear mixed models. For posterior inference, we propose a Gibbs sampling algorithm based on a mixture representation of the asymmetric Laplace distribution and multivariate skew-normal distribution. The procedures are demonstrated by both simulated and real data examples.     

A Quantile Survival Model for Censored Data

In this paper we propose a quantile survival model to analyze censored data. This approach provides a very effective way to construct a proper model for the survival time conditional on some covariates. Once a quantile survival model for the censored data is established, the survival density, survival or hazard functions of the survival time can be obtained easily. For illustration purposes, we focus on a model that is based on the generalized lambda distribution (GLD). The GLD and many other quantile function models are defined only through their quantile functions, no closed‐form expressions are available for other equivalent functions. We also develop a Bayesian Markov Chain Monte Carlo (MCMC) method for parameter estimation. Extensive simulation studies have been conducted. Both simulation study and application results show that the proposed quantile survival models can be very useful in practice.     

Automatic Bayesian quantile regression curve fitting

Quantile regression, including median regression, as a more completed statistical model than mean regression, is now well known with its wide spread applications. Bayesian inference on quantile regression or Bayesian quantile regression has attracted much interest recently. Most of the existing researches in Bayesian quantile regression focus on parametric quantile regression, though there are discussions on different ways of modeling the model error by a parametric distribution named asymmetric Laplace distribution or by a nonparametric alternative named scale mixture asymmetric Laplace distribution. This paper discusses Bayesian inference for nonparametric quantile regression. This general approach fits quantile regression curves using piecewise polynomial functions with an unknown number of knots at unknown locations, all treated as parameters to be inferred through reversible jump Markov chain Monte Carlo (RJMCMC) of Green (Biometrika 82:711–732, 1995). Instead of drawing samples from the posterior, we use regression quantiles to create Markov chains for the estimation of the quantile curves. We also use approximate Bayesian factor in the inference. This method extends the work in automatic Bayesian mean curve fitting to quantile regression. Numerical results show that this Bayesian quantile smoothing technique is competitive with quantile regression/smoothing splines of He and Ng (Comput. Stat. 14:315–337, 1999) and P-splines (penalized splines) of Eilers and de Menezes (Bioinformatics 21(7):1146–1153, 2005).     

Quantile regression for robust estimation and variable selection in partially linear varying-coefficient models

In this paper, we develop a new estimation procedure based on quantile regression for semiparametric partially linear varying-coefficient models. The proposed estimation approach is empirically shown to be much more efficient than the popular least squares estimation method for non-normal error distributions, and almost not lose any efficiency for normal errors. Asymptotic normalities of the proposed estimators for both the parametric and nonparametric parts are established. To achieve sparsity when there exist irrelevant variables in the model, two variable selection procedures based on adaptive penalty are developed to select important parametric covariates as well as significant nonparametric functions. Moreover, both these two variable selection procedures are demonstrated to enjoy the oracle property under some regularity conditions. Some Monte Carlo simulations are conducted to assess the finite sample performance of the proposed estimators, and a real-data example is used to illustrate the application of the proposed methods.     

Bayesian density regression for discrete outcomes

We develop Bayesian models for density regression with emphasis on discrete outcomes. The problem of density regression is approached by considering methods for multivariate density estimation of mixed scale variables, and obtaining conditional densities from the multivariate ones. The approach to multivariate mixed scale outcome density estimation that we describe represents discrete variables, either responses or covariates, as discretised versions of continuous latent variables. We present and compare several models for obtaining these thresholds in the challenging context of count data analysis where the response may be over‐ and/or under‐dispersed in some of the regions of the covariate space. We utilise a nonparametric mixture of multivariate Gaussians to model the directly observed and the latent continuous variables. The paper presents a Markov chain Monte Carlo algorithm for posterior sampling, sufficient conditions for weak consistency, and illustrations on density, mean and quantile regression utilising simulated and real datasets.     

Comparison of Bayesian Model Selection Criteria and Conditional Kolmogorov Test as Applied to Spot Asset Pricing Models

We compare Bayesian and sample theory model specification criteria. For the Bayesian criteria we use the deviance information criterion and the cumulative density of the mean squared errors of forecast. For the sample theory criterion we use the conditional Kolmogorov test. We use Markov chain Monte Carlo methods to obtain the Bayesian criteria and bootstrap sampling to obtain the conditional Kolmogorov test. Two non nested models we consider are the CIR and Vasicek models for spot asset prices. Monte Carlo experiments show that the DIC performs better than the cumulative density of the mean squared errors of forecast and the CKT. According to the DIC and the mean squared errors of forecast, the CIR model explains the daily data on uncollateralized Japanese call rate from January 1, 1990 to April 18, 1996; but according to the CKT, neither the CIR nor Vasicek models explains the daily data.     

Bayesian analysis of censored linear regression models with scale mixtures of normal distributions

As is the case of many studies, the data collected are limited and an exact value is recorded only if it falls within an interval range. Hence, the responses can be either left, interval or right censored. Linear (and nonlinear) regression models are routinely used to analyze these types of data and are based on normality assumptions for the errors terms. However, those analyzes might not provide robust inference when the normality assumptions are questionable. In this article, we develop a Bayesian framework for censored linear regression models by replacing the Gaussian assumptions for the random errors with scale mixtures of normal (SMN) distributions. The SMN is an attractive class of symmetric heavy-tailed densities that includes the normal, Student-t, Pearson type VII, slash and the contaminated normal distributions, as special cases. Using a Bayesian paradigm, an efficient Markov chain Monte Carlo algorithm is introduced to carry out posterior inference. A new hierarchical prior distribution is suggested for the degrees of freedom parameter in the Student-t distribution. The likelihood function is utilized to compute not only some Bayesian model selection measures but also to develop Bayesian case-deletion influence diagnostics based on the q-divergence measure. The proposed Bayesian methods are implemented in the R package BayesCR. The newly developed procedures are illustrated with applications using real and simulated data.     

NEW EFFICIENT ESTIMATION AND VARIABLE SELECTION METHODS FOR SEMIPARAMETRIC VARYING-COEFFICIENT PARTIALLY LINEAR MODELS

The complexity of semiparametric models poses new challenges to statistical inference and model selection that frequently arise from real applications. In this work, we propose new estimation and variable selection procedures for the semiparametric varying-coefficient partially linear model. We first study quantile regression estimates for the nonparametric varying-coefficient functions and the parametric regression coefficients. To achieve nice efficiency properties, we further develop a semiparametric composite quantile regression procedure. We establish the asymptotic normality of proposed estimators for both the parametric and nonparametric parts and show that the estimators achieve the best convergence rate. Moreover, we show that the proposed method is much more efficient than the least-squares-based method for many non-normal errors and that it only loses a small amount of efficiency for normal errors. In addition, it is shown that the loss in efficiency is at most 11.1% for estimating varying coefficient functions and is no greater than 13.6% for estimating parametric components. To achieve sparsity with high-dimensional covariates, we propose adaptive penalization methods for variable selection in the semiparametric varying-coefficient partially linear model and prove that the methods possess the oracle property. Extensive Monte Carlo simulation studies are conducted to examine the finite-sample performance of the proposed procedures. Finally, we apply the new methods to analyze the plasma beta-carotene level data.     

基于逆跳MCMC的贝叶斯分位自回归模型研究

考虑到传统信息理论方法确定模型存在不足,在贝叶斯理论框架下提出了基于逆跳马尔可夫链蒙特卡罗法确定分位自回归模型阶次的方法。在时间序列服从非对称Laplace分布的条件下,设计了马尔可夫链蒙特卡罗数值计算程序,得到了不同分位数下模型参数的贝叶斯估计值。实证研究表明：基于逆跳马尔可夫链蒙特卡罗法的贝叶斯分位自回归模型能有效地揭示滞后变量对响应变量的位置、尺度和形状的影响。