Robust estimation of covariance parameters in partial linear model for longitudinal data

For longitudinal data, the within-subject dependence structure and covariance parameters may be of practical and theoretical interests. The estimation of covariance parameters has received much attention and been studied mainly in the framework of generalized estimating equations (GEEs). The GEEs method, however, is sensitive to outliers. In this paper, an alternative set of robust generalized estimating equations for both the mean and covariance parameters are proposed in the partial linear model for longitudinal data. The asymptotic properties of the proposed estimators of regression parameters, non-parametric function and covariance parameters are obtained. Simulation studies are conducted to evaluate the performance of the proposed estimators under different contaminations. The proposed method is illustrated with a real data analysis.     

Estimated estimating equations: semiparametric inference for clustered and longitudinal data

Summary.  We introduce a flexible marginal modelling approach for statistical inference for clustered and longitudinal data under minimal assumptions. This estimated estimating equations approach is semiparametric and the proposed models are fitted by quasi-likelihood regression, where the unknown marginal means are a function of the fixed effects linear predictor with unknown smooth link, and variance–covariance is an unknown smooth function of the marginal means. We propose to estimate the nonparametric link and variance–covariance functions via smoothing methods, whereas the regression parameters are obtained via the estimated estimating equations. These are score equations that contain nonparametric function estimates. The proposed estimated estimating equations approach is motivated by its flexibility and easy implementation. Moreover, if data follow a generalized linear mixed model, with either a specified or an unspecified distribution of random effects and link function, the model proposed emerges as the corresponding marginal (population-average) version and can be used to obtain inference for the fixed effects in the underlying generalized linear mixed model, without the need to specify any other components of this generalized linear mixed model. Among marginal models, the estimated estimating equations approach provides a flexible alternative to modelling with generalized estimating equations. Applications of estimated estimating equations include diagnostics and link selection. The asymptotic distribution of the proposed estimators for the model parameters is derived, enabling statistical inference. Practical illustrations include Poisson modelling of repeated epileptic seizure counts and simulations for clustered binomial responses.     

Efficient estimation in partially linear single‐index models for longitudinal data

In this paper, we consider the estimation of both the parameters and the nonparametric link function in partially linear single‐index models for longitudinal data that may be unbalanced. In particular, a new three‐stage approach is proposed to estimate the nonparametric link function using marginal kernel regression and the parametric components with generalized estimating equations. The resulting estimators properly account for the within‐subject correlation. We show that the parameter estimators are asymptotically semiparametrically efficient. We also show that the asymptotic variance of the link function estimator is minimized when the working error covariance matrices are correctly specified. The new estimators are more efficient than estimators in the existing literature. These asymptotic results are obtained without assuming normality. The finite‐sample performance of the proposed method is demonstrated by simulation studies. In addition, two real‐data examples are analyzed to illustrate the methodology.     

Robust testing with generalized partial linear models for longitudinal data

By approximating the nonparametric component using a regression spline in generalized partial linear models (GPLM), robust generalized estimating equations (GEE), involving bounded score function and leverage-based weighting function, can be used to estimate the regression parameters in GPLM robustly for longitudinal data or clustered data. In this paper, score test statistics are proposed for testing the regression parameters with robustness, and their asymptotic distributions under the null hypothesis and a class of local alternative hypotheses are studied. The proposed score tests reply on the estimation of a smaller model without the testing parameters involved, and perform well in the simulation studies and real data analysis conducted in this paper.     

Estimation of a two-equation panel model with mixed continuous and ordered categorical outcomes and missing data

Summary.  The paper proposes an estimation approach for panel models with mixed continuous and ordered categorical outcomes based on generalized estimating equations for the mean and pseudoscore equations for the covariance parameters. A numerical study suggests that efficiency can be gained in the mean parameter estimators by using individual covariance matrices in the estimating equations for the mean parameters. The approach is applied to estimate the returns to occupational qualification in terms of income and perceived job security in a 9-year period based on the German Socio-Economic Panel. To compensate for missing data, a combined multiple imputation–weighting approach is adopted.     

Closed-Form Estimators for the Gamma Distribution Derived From Likelihood Equations

It is well-known that maximum likelihood (ML) estimators of the two parameters in a gamma distribution do not have closed forms. This poses difficulties in some applications such as real-time signal processing using low-grade processors. The gamma distribution is a special case of a generalized gamma distribution. Surprisingly, two out of the three likelihood equations of the generalized gamma distribution can be used as estimating equations for the gamma distribution, based on which simple closed-form estimators for the two gamma parameters are available. Intuitively, performance of the new estimators based on likelihood equations should be close to the ML estimators. The study consolidates this conjecture by establishing the asymptotic behaviors of the new estimators. In addition, the closed-forms enable bias-corrections to these estimators. The bias-correction significantly improves the small-sample performance.     

Population-averaged and subjectspecific approaches for clustered categorical data

Modeling clustered categorical data based on extensions of generalized linear model theory has received much attention in recent years. The rapidly increasing number of approaches suitable for categorical data in which clusters are uncorrelated, but correlations exist within a cluster, has caused uncertainty among applied scientists as to their respective merits and demerits. Upon centering estimation around solving an unbiased estimating function for mean parameters and estimation of covariance parameters describing within-cluster or among-cluster heterogeneity, many approaches can easily be related. This contribution describes a series of algorithms and their implementation in detail, based on a classification of inferential procedures for clustered data.     

Parameter estimation for multivariate diffusion processes with the time inhomogeneously positive semidefinite diffusion matrix

Statistical inference for the diffusion coefficients of multivariate diffusion processes has been well established in recent years; however, it is not the case for the drift coefficients. Furthermore, most existing estimation methods for the drift coefficients are proposed under the assumption that the diffusion matrix is positive definite and time homogeneous. In this article, we put forward two estimation approaches for estimating the drift coefficients of the multivariate diffusion models with the time inhomogeneously positive semidefinite diffusion matrix. They are maximum likelihood estimation methods based on both the martingale representation theorem and conditional characteristic functions and the generalized method of moments based on conditional characteristic functions, respectively. Consistency and asymptotic normality of the generalized method of moments estimation are also proved in this article. Simulation results demonstrate that these methods work well.     

A model selection method based on the adaptive LASSO-penalized GEE and weighted Gaussian pseudo-likelihood BIC in longitudinal robust analysis

In this article, a new robust variable selection approach is introduced by combining the robust generalized estimating equations and adaptive LASSO penalty function for longitudinal generalized linear models. Then, an efficient weighted Gaussian pseudo-likelihood version of the BIC (WGBIC) is proposed to choose the tuning parameter in the process of robust variable selection and to select the best working correlation structure simultaneously. Meanwhile, the oracle properties of the proposed robust variable selection method are established and an efficient algorithm combining the iterative weighted least squares and minorization–maximization is proposed to implement robust variable selection and parameter estimation.     

Communication in Statistics-Theory and methods improved GQL estimation method for the generalised BINMA(1) model

In a recent research, the quasi-likelihood estimation methodology was developed to estimate the regression effects in the Generalized BINMA(1) (GBINMA(1)) process. The method provides consistent parameter estimates but, in the intermediate computations, moment estimating equations were used to estimate the serial- and cross-correlation parameters. This procedure may not result optimal parameter estimates, in particular, for the regression effects. This paper provides an alternative simpler GBINMA(1) process based on multivariate thinning properties where the main effects are estimated via a robust generalized quasi-likelihood (GQL) estimation approach. The two techniques are compared through some simulation experiments. A real-life data application is studied.     

Shrinkage tuning parameter selection in precision matrices estimation

Recent literature provides many computational and modeling approaches for covariance matrices estimation in a penalized Gaussian graphical models but relatively little study has been carried out on the choice of the tuning parameter. This paper tries to fill this gap by focusing on the problem of shrinkage parameter selection when estimating sparse precision matrices using the penalized likelihood approach. Previous approaches typically used K-fold cross-validation in this regard. In this paper, we first derived the generalized approximate cross-validation for tuning parameter selection which is not only a more computationally efficient alternative, but also achieves smaller error rate for model fitting compared to leave-one-out cross-validation. For consistency in the selection of nonzero entries in the precision matrix, we employ a Bayesian information criterion which provably can identify the nonzero conditional correlations in the Gaussian model. Our simulations demonstrate the general superiority of the two proposed selectors in comparison with leave-one-out cross-validation, 10-fold cross-validation and Akaike information criterion.     

Generalized Empirical Likelihood Inference in Generalized Linear Models for Longitudinal Data

In this article, the generalized linear model for longitudinal data is studied. A generalized empirical likelihood method is proposed by combining generalized estimating equations and quadratic inference functions based on the working correlation matrix. It is proved that the proposed generalized empirical likelihood ratios are asymptotically chi-squared under some suitable conditions, and hence it can be used to construct the confidence regions of the parameters. In addition, the maximum empirical likelihood estimates of parameters are obtained, and their asymptotic normalities are proved. Some simulations are undertaken to compare the generalized empirical likelihood and normal approximation-based method in terms of coverage accuracies and average areas/lengths of confidence regions/intervals. An example of a real data is used for illustrating our methods.     

A simple approach to analyzing clustered longitudinal data

When modeling correlated binary data in the presence of informative cluster sizes, generalized estimating equations with either resampling or inverse-weighting, are often used to correct for estimation bias. However, existing methods for the clustered longitudinal setting assume constant cluster sizes over time. We present a subject-weighted generalized estimating equations scheme that provides valid parameter estimation for the clustered longitudinal setting while allowing cluster sizes to change over time. We compare, via simulation, the performance of existing methods to our subject-weighted approach. The subject-weighted approach was the only method that showed negligible bias, with excellent coverage, for all model parameters.     

Parameter estimation for generalized logistic distribution by estimating equations based on the order statistics

In this paper, we propose estimating equations estimators (EEE) based on the order statistics for the generalized Logistic distribution. Some asymptotic results are provided. Two simulation studies are undertaken to assess the performance of the proposed method and to compare them with other methods suggested in this paper. The simulation results indicate that EEE performs better than some other methods in terms of MSE. Finally, the proposed method is applied to two real data sets.     

Joint generalized estimating equations for multivariate longitudinal binary outcomes with missing data: an application to acquired immune deficiency syndrome data

Summary.  In a large, prospective longitudinal study designed to monitor cardiac abnormalities in children born to women who are infected with the human immunodeficiency virus, instead of a single outcome variable, there are multiple binary outcomes (e.g. abnormal heart rate, abnormal blood pressure and abnormal heart wall thickness) considered as joint measures of heart function over time. In the presence of missing responses at some time points, longitudinal marginal models for these multiple outcomes can be estimated by using generalized estimating equations (GEEs), and consistent estimates can be obtained under the assumption of a missingness completely at random mechanism. When the missing data mechanism is missingness at random, i.e. the probability of missing a particular outcome at a time point depends on observed values of that outcome and the remaining outcomes at other time points, we propose joint estimation of the marginal models by using a single modified GEE based on an EM-type algorithm. The method proposed is motivated by the longitudinal study of cardiac abnormalities in children who were born to women infected with the human immunodeficiency virus, and analyses of these data are presented to illustrate the application of the method. Further, in an asymptotic study of bias, we show that, under a missingness at random mechanism in which missingness depends on all observed outcome variables, our joint estimation via the modified GEE produces almost unbiased estimates, provided that the correlation model has been correctly specified, whereas estimates from standard GEEs can lead to substantial bias.     

Semiparametric estimation of moment condition models with weakly dependent data

This paper develops the asymptotic theory for the estimation of smooth semiparametric generalized estimating equations models with weakly dependent data. The paper proposes new estimation methods based on smoothed two-step versions of the generalised method of moments and generalised empirical likelihood methods. An important aspect of the paper is that it allows the first-step estimation to have an effect on the asymptotic variances of the second-step estimators and explicitly characterises this effect for the empirically relevant case of the so-called generated regressors. The results of the paper are illustrated with a partially linear model that has not been previously considered in the literature. The proofs of the results utilise a new uniform strong law of large numbers and a new central limit theorem for U-statistics with varying kernels that are of independent interest.     

Poisson-Driven Stationary Markov Models

ABSTRACT

We propose a simple yet powerful method to construct strictly stationary Markovian models with given but arbitrary invariant distributions. The idea is based on a Poisson-type transform modulating the dependence structure in the model. An appealing feature of our approach is the possibility to control the underlying transition probabilities and, therefore, incorporate them within standard estimation methods. Given the resulting representation of the transition density, a Gibbs sampler algorithm based on the slice method is proposed and implemented. In the discrete-time case, special attention is placed to the class of generalized inverse Gaussian distributions. In the continuous case, we first provide a brief treatment of the class of gamma distributions, and then extend it to cover other invariant distributions, such as the generalized extreme value class. The proposed approach and estimation algorithm are illustrated with real financial datasets. Supplementary materials for this article are available online.     

A generalized estimating equation method for fitting autocorrelated ordinal score data with an application in horticultural research

Summary.  Generalized estimating equations for correlated repeated ordinal score data are developed assuming a proportional odds model and a working correlation structure based on a first-order autoregressive process. Repeated ordinal scores on the same experimental units, not necessarily with equally spaced time intervals, are assumed and a new algorithm for the joint estimation of the model regression parameters and the correlation coefficient is developed. Approximate standard errors for the estimated correlation coefficient are developed and a simulation study is used to compare the new methodology with existing methodology. The work was part of a project on post-harvest quality of pot-plants and the generalized estimating equation model is used to analyse data on poinsettia and begonia pot-plant quality deterioration over time. The relationship between the key attributes of plant quality and the quality and longevity of ornamental pot-plants during shelf and after-sales life is explored.     

Estimating consumer acceptance limits

A methodology is developed for estimating consumer acceptance limits on a sensory attribute of a manufactured product. In concept these limits are analogous to engineering tolerances. The method is based on a generalization of Stevens' Power Law. This generalized law is expressed as a nonlinear statistical model. Instead of restricting the analysis to this particular case, a strategy is discussed for evaluating nonlinear models in general since scientific models are frequently of nonlinear form. The strategy focuses on understanding the geometrical contrasts between linear and nonlinear model estimation and assessing the bias in estimation and the departures from a Gaussian sampling distribution. Computer simulation is employed to examine the behavior of nonlinear least squares estimation. In addition to the usual Gaussian assumption, a bootstrap sample reuse procedure and a general triangular distribution are introduced for evaluating the effects of a non-Gaussian or asymmetrical error structure. Recommendations are given for further model analysis based on the simulation results. In the case of a model for which estimation bias is not a serious issue, estimating functions of the model are considered. Application of these functions to the generalization of Stevens’ Power Law leads to a means for defining and estimating consumer acceptance limits, The statistical form of the law and the model evaluation strategy are applied to consumer research data. Estimation of consumer acceptance limits is illustrated and discussed.     

Generalized Estimating Equations to Binary Probit Model

Inference in generalized linear mixed models with multivariate random effects is often made cumbersome by the high-dimensional intractable integrals involved in the marginal likelihood. This article presents an inferential methodology based on the generalized estimating equations for the probit latent traits models. This method belonging to the broad class of semi parametric approaches involves marginal joint moments of order 1 and 2, which has analytical expression. The different results are illustrated with a simulation study.