Semiparametric estimation for count data through weighted distributions

This paper is concerned with semiparametric discrete kernel estimators when the unknown count distribution can be considered to have a general weighted Poisson form. The estimator is constructed by multiplying the Poisson estimate with a nonparametric discrete kernel-type estimate of the Poisson weight function. Comparisons are then carried out with the ordinary discrete kernel probability mass function estimators. The Poisson weight function is thus a local multiplicative correction factor, and is considered as the uniform measure to detect departures from the equidispersed Poisson distribution. In this way, the effects of dispersion and zero-proportion with respect to the standard Poisson distribution are also minimized. This method of estimation is also applied to the weighted binomial form for the count distribution having a finite support. The proposed estimators, in addition to being simple, easy-to-implement and effective, also outperform the competing nonparametric and parametric estimators in finite-sample situations. Two examples illustrate this new semiparametric estimation.     

Adaptive estimation of error density in nonparametric regression with small sample size

It has been established recently in Efromovich [2005. Estimation of the density of regression errors. Ann. Statist. 33, 2194–2227] that, under a mild assumption, the error density in a nonparametric regression can be asymptotically estimated with the accuracy of an oracle that knows underlying regression errors. The asymptotic nature of the result, and in particular the used methodology of splitting data for estimating nuisance functions and the error density, does not make an asymptotic estimator, suggested in that article, feasible for practically interesting cases of small sample sizes. This article continues the research and solves two important issues. First, it shows that the asymptotic holds without splitting the data. Second, a data-driven estimator, based on the new asymptotic, is suggested and then tested on real and simulated examples.     

Empirical Bayes regression analysis with many regressors but fewer observations

In this paper, we consider the prediction problem in multiple linear regression model in which the number of predictor variables, p, is extremely large compared to the number of available observations, n  . The least-squares predictor based on a generalized inverse is not efficient. We propose six empirical Bayes estimators of the regression parameters. Three of them are shown to have uniformly lower prediction error than the least-squares predictors when the vector of regressor variables are assumed to be random with mean vector zero and the covariance matrix (1/n)X^tX$(1/n){\mathit{X}}^{\mathrm{t}}\mathit{X}$ where X^t=(_x1,…,_xn)${\mathit{X}}^{\mathrm{t}}=({\mathit{x}}_1,\dots ,{\mathit{x}}_n)$ is the p×n$p\times n$ matrix of observations on the regressor vector centered from their sample means. For other estimators, we use simulation to show its superiority over the least-squares predictor.     

Conditional variance estimation via nonparametric generalized additive models

Generalized additive models provide a way of circumventing curse of dimension in a wide range of nonparametric regression problem. In this paper, we present a multiplicative model for conditional variance functions where one can apply a generalized additive regression method. This approach extends Fan and Yao (1998) to multivariate cases with a multiplicative structure. In this approach, we use squared residuals instead of using log-transformed squared residuals. This idea gives a smaller variance than Yu (2017) when the variance of squared error is smaller than the variance of log-transformed squared error. We provide estimators based on quasi-likelihood and an iterative algorithm based on smooth backfitting for generalized additive models. We also provide some asymptotic properties of estimators and the convergence of proposed algorithm. A numerical study shows the empirical evidence of the theory.     

Bayesian curve fitting and clustering with Dirichlet process mixture models for microarray data

In the field of molecular biology, it is often of interest to analyze microarray data for clustering genes based on similar profiles of gene expression to identify genes that are differentially expressed under multiple biological conditions. One of the notable characteristics of a gene expression profile is that it shows a cyclic curve over a course of time. To group sequences of similar molecular functions, we propose a Bayesian Dirichlet process mixture of linear regression models with a Fourier series for the regression coefficients, for each of which a spike and slab prior is assumed. A full Gibbs-sampling algorithm is developed for an efficient Markov chain Monte Carlo (MCMC) posterior computation. Due to the so-called “label-switching” problem and different numbers of clusters during the MCMC computation, a post-process approach of Fritsch and Ickstadt (2009) is additionally applied to MCMC samples for an optimal single clustering estimate by maximizing the posterior expected adjusted Rand index with the posterior probabilities of two observations being clustered together. The proposed method is illustrated with two simulated data and one real data of the physiological response of fibroblasts to serum of Iyer et al. (1999).     

A new orthogonality-based estimation for varying-coefficient partially linear models

Varying coefficient partially linear models are usually used for longitudinal data analysis, and an interest is mainly to improve efficiency of regression coefficients. By the orthogonality estimation technology and the quadratic inference function method, we propose a new orthogonality-based estimation method to estimate parameter and nonparametric components in varying coefficient partially linear models with longitudinal data. The proposed procedure can separately estimate the parametric and nonparametric components, and the resulting estimators do not affect each other. Under some mild conditions, we establish some asymptotic properties of the resulting estimators. Furthermore, the finite sample performance of the proposed procedure is assessed by some simulation experiments.     

Model averaging procedure for varying-coefficient partially linear models with missing responses

This paper is concerned with model averaging procedure for varying-coefficient partially linear models with missing responses. The profile least-squares estimation process and inverse probability weighted method are employed to estimate regression coefficients of the partially restricted models, in which the propensity score is estimated by the covariate balancing propensity score method. The estimators of the linear parameters are shown to be asymptotically normal. Then we develop the focused information criterion, formulate the frequentist model averaging estimators and construct the corresponding confidence intervals. Some simulation studies are conducted to examine the finite sample performance of the proposed methods. We find that the covariate balancing propensity score improves the performance of the inverse probability weighted estimator. We also demonstrate the superiority of the proposed model averaging estimators over those of existing strategies in terms of mean squared error and coverage probability. Finally, our approach is further applied to a real data example.     

Bernstein conditional density estimation with application to conditional distribution and regression functions

In this paper we propose a smooth nonparametric estimation for the conditional probability density function based on a Bernstein polynomial representation. Our estimator can be written as a finite mixture of beta densities with data-driven weights. Using the Bernstein estimator of the conditional density function, we derive new estimators for the distribution function and conditional mean. We establish the asymptotic properties of the proposed estimators, by proving their asymptotic normality and by providing their asymptotic bias and variance. Simulation results suggest that the proposed estimators can outperform the Nadaraya–Watson estimator and, in some specific setups, the local linear kernel estimators. Finally, we use our estimators for modeling the income in Italy, conditional on year from 1951 to 1998, and have another look at the well known Old Faithful Geyser data.     

A Bayesian approach to mixture cure models with spatial frailties for population‐based cancer relative survival data

As the treatments of cancer progress, a certain number of cancers are curable if diagnosed early. In population‐based cancer survival studies, cure is said to occur when mortality rate of the cancer patients returns to the same level as that expected for the general cancer‐free population. The estimates of cure fraction are of interest to both cancer patients and health policy makers. Mixture cure models have been widely used because the model is easy to interpret by separating the patients into two distinct groups. Usually parametric models are assumed for the latent distribution for the uncured patients. The estimation of cure fraction from the mixture cure model may be sensitive to misspecification of latent distribution. We propose a Bayesian approach to mixture cure model for population‐based cancer survival data, which can be extended to county‐level cancer survival data. Instead of modeling the latent distribution by a fixed parametric distribution, we use a finite mixture of the union of the lognormal, loglogistic, and Weibull distributions. The parameters are estimated using the Markov chain Monte Carlo method. Simulation study shows that the Bayesian method using a finite mixture latent distribution provides robust inference of parameter estimates. The proposed Bayesian method is applied to relative survival data for colon cancer patients from the Surveillance, Epidemiology, and End Results (SEER) Program to estimate the cure fractions. The Canadian Journal of Statistics 40: 40–54; 2012 © 2012 Statistical Society of Canada     

Asymptotic distribution of data-driven smoothers in density and regression estimation under dependence

We consider automatic data-driven density, regression and autoregression estimates, based on any random bandwidth selector h/_T. We show that in a first-order asymptotic approximation they behave as well as the related estimates obtained with the “optimal” bandwidth h_T as long as h_T/h_T → 1 in probability. The results are obtained for dependent observations; some of them are also new for independent observations.     

A nonparametric inverse probability weighted estimation for functional data with missing response data at random

This paper considers the nonparametric inverse probability weighted estimation for functional data with missing response data at random. Under mild conditions, the asymptotic properties of the proposed estimation method are established. Based on the resampling method, the estimation of the asymptotic variance of the proposed estimator is obtained. Finally, the finite sample properties of the proposed estimation method are investigated via Monte Carlo simulation studies. A real data analysis is given to illustrate the use of the proposed method.