Testing the Lack-of-Fit of Zero-Inflated Poisson Regression Models

A zero-inflated Poisson regression model has been widely used for the effect of a covariate in count data containing many zeros with a linear predictor. To assess the adequacy of the linear relationship, we approximate the covariate effect with cubic B-splines. The semiparametric model parameters are estimated by maximizing the likelihood function through an expectation-maximization algorithm. A log-likelihood ratio test is then used to evaluate the adequacy of the linear relation. A simulation study is conducted to study the power performance of the test. A real example is provided to demonstrate the practical use of the methodology.     

A test for lack-of-fit of zero-inflated negative binomial models

When a count data set has excessive zero counts, nonzero counts are overdispersed, and the effect of a continuous covariate might be nonlinear, for analysis a semiparametric zero-inflated negative binomial (ZINB) regression model is proposed. The unspecified smooth functional form for the continuous covariate effect is approximated by a cubic spline. The semiparametric ZINB regression model is fitted by maximizing the likelihood function. The likelihood ratio procedure is used to evaluate the adequacy of a postulated parametric functional form for the continuous covariate effect. An extensive simulation study is conducted to assess the finite-sample performance of the proposed test. The practicality of the proposed methodology is demonstrated with data of a motorcycle survey of traffic regulations conducted in 2007 in Taiwan by the Ministry of Transportation and Communication.     

Semiparametric Negative Binomial Regression Models

Negative-binomial (NB) regression models have been widely used for analysis of count data displaying substantial overdispersion (extra-Poisson variation). However, no formal lack-of-fit tests for a postulated parametric model for a covariate effect have been proposed. Therefore, a flexible parametric procedure is used to model the covariate effect as a linear combination of fixed-knot cubic basis splines or B-splines. Within the proposed modeling framework, a log-likelihood ratio test is constructed to evaluate the adequacy of a postulated parametric form of the covariate effect. Simulation experiments are conducted to study the power performance of the proposed test.     

A note on functional linear regression

This work focuses on the linear regression model with functional covariate and scalar response. We compare the performance of two (parametric) linear regression estimators and a nonparametric (kernel) estimator via a Monte Carlo simulation study and the analysis of two real data sets. The first linear estimator expands the predictor and the regression weight function in terms of the trigonometric basis, while the second one uses functional principal components. The choice of the regularization degree in the linear estimators is addressed.     

Restricted Estimation in Partially Linear Errors-in-Variables Models

As a compromise between parametric regression and nonparametric regression, partially linear models are frequently used in statistical modelling. This article considers statistical inference for this semiparametric model when the linear covariate is measured with additive error and some additional linear restrictions on the parametric component are assumed to hold. We propose a restricted corrected profile least-squares estimator for the parametric component, and study the asymptotic normality of the estimator. To test hypothesis on the parametric component, we construct a Wald test statistic and obtain its limiting distribution. Some simulation studies are conducted to illustrate our approaches.     

Selecting the Optimal Transformation of a Continuous Covariate in Cox's Regression: Implications for Hypothesis Testing

ABSTRACT

Background: Many exposures in epidemiological studies have nonlinear effects and the problem is to choose an appropriate functional relationship between such exposures and the outcome. One common approach is to investigate several parametric transformations of the covariate of interest, and to select a posteriori the function that fits the data the best. However, such approach may result in an inflated Type I error. Methods: Through a simulation study, we generated data from Cox's models with different transformations of a single continuous covariate. We investigated the Type I error rate and the power of the likelihood ratio test (LRT) corresponding to three different procedures that considered the same set of parametric dose-response functions. The first unconditional approach did not involve any model selection, while the second conditional approach was based on a posteriori selection of the parametric function. The proposed third approach was similar to the second except that it used a corrected critical value for the LRT to ensure a correct Type I error. Results: The Type I error rate of the second approach was two times higher than the nominal size. For simple monotone dose-response, the corrected test had similar power as the unconditional approach, while for non monotone, dose-response, it had a higher power. A real-life application that focused on the effect of body mass index on the risk of coronary heart disease death, illustrated the advantage of the proposed approach. Conclusion: Our results confirm that a posteriori selecting the functional form of the dose-response induces a Type I error inflation. The corrected procedure, which can be applied in a wide range of situations, may provide a good trade-off between Type I error and power.     

Robust group-Lasso for functional regression model

In this article, we consider the problem of selecting functional variables using the L1 regularization in a functional linear regression model with a scalar response and functional predictors, in the presence of outliers. Since the LASSO is a special case of the penalized least-square regression with L1 penalty function, it suffers from the heavy-tailed errors and/or outliers in data. Recently, Least Absolute Deviation (LAD) and the LASSO methods have been combined (the LAD-LASSO regression method) to carry out robust parameter estimation and variable selection simultaneously for a multiple linear regression model. However, variable selection of the functional predictors based on LASSO fails since multiple parameters exist for a functional predictor. Therefore, group LASSO is used for selecting functional predictors since group LASSO selects grouped variables rather than individual variables. In this study, we propose a robust functional predictor selection method, the LAD-group LASSO, for a functional linear regression model with a scalar response and functional predictors. We illustrate the performance of the LAD-group LASSO on both simulated and real data.     

Classical testing in functional linear models

We extend four tests common in classical regression – Wald, score, likelihood ratio and F tests – to functional linear regression, for testing the null hypothesis, that there is no association between a scalar response and a functional covariate. Using functional principal component analysis, we re-express the functional linear model as a standard linear model, where the effect of the functional covariate can be approximated by a finite linear combination of the functional principal component scores. In this setting, we consider application of the four traditional tests. The proposed testing procedures are investigated theoretically for densely observed functional covariates when the number of principal components diverges. Using the theoretical distribution of the tests under the alternative hypothesis, we develop a procedure for sample size calculation in the context of functional linear regression. The four tests are further compared numerically for both densely and sparsely observed noisy functional data in simulation experiments and using two real data applications.     

Markov-switching generalized additive models

We consider Markov-switching regression models, i.e. models for time series regression analyses where the functional relationship between covariates and response is subject to regime switching controlled by an unobservable Markov chain. Building on the powerful hidden Markov model machinery and the methods for penalized B-splines routinely used in regression analyses, we develop a framework for nonparametrically estimating the functional form of the effect of the covariates in such a regression model, assuming an additive structure of the predictor. The resulting class of Markov-switching generalized additive models is immensely flexible, and contains as special cases the common parametric Markov-switching regression models and also generalized additive and generalized linear models. The feasibility of the suggested maximum penalized likelihood approach is demonstrated by simulation. We further illustrate the approach using two real data applications, modelling (i) how sales data depend on advertising spending and (ii) how energy price in Spain depends on the Euro/Dollar exchange rate.     

Scale Checks in Censored Regression

Abstract. Suppose the random vector (X,Y) satisfies the regression model Y = m(X) + σ (X) ? , where m (?) and σ (?) are unknown location and scale functions and ? is independent of X. The response Y is subject to random right censoring, and the covariate X is completely observed. A new test for a specific parametric form of any scale function σ (?) (including the standard deviation function) is proposed. Its statistic is based on the distribution of the residuals obtained from the assumed regression model. Weak convergence of the corresponding process is obtained, and its finite sample behaviour is studied via simulations. Finally, characteristics of the test are illustrated in the analysis of a fatigue data set.     

Marginal zero-inflated regression models for count data

Data sets with excess zeroes are frequently analyzed in many disciplines. A common framework used to analyze such data is the zero-inflated (ZI) regression model. It mixes a degenerate distribution with point mass at zero with a non-degenerate distribution. The estimates from ZI models quantify the effects of covariates on the means of latent random variables, which are often not the quantities of primary interest. Recently, marginal zero-inflated Poisson (MZIP; Long et al. [A marginalized zero-inflated Poisson regression model with overall exposure effects. Stat. Med. 33 (2014), pp. 5151–5165]) and negative binomial (MZINB; Preisser et al., 2016) models have been introduced that model the mean response directly. These models yield covariate effects that have simple interpretations that are, for many applications, more appealing than those available from ZI regression. This paper outlines a general framework for marginal zero-inflated models where the latent distribution is a member of the exponential dispersion family, focusing on common distributions for count data. In particular, our discussion includes the marginal zero-inflated binomial (MZIB) model, which has not been discussed previously. The details of maximum likelihood estimation via the EM algorithm are presented and the properties of the estimators as well as Wald and likelihood ratio-based inference are examined via simulation. Two examples presented illustrate the advantages of MZIP, MZINB, and MZIB models for practical data analysis.     

A note on the asymptotic relative efficiency of estimators from the additive hazards model

In this note, the asymptotic variance formulas are explicitly derived and compared between the parametric and semiparametric estimators of a regression parameter and survival probability under the additive hazards model. To obtain explicit formulas, it is assumed that the covariate term including a regression coefficient follows a gamma distribution and the baseline hazard function is constant. The results show that the semiparametric estimator of the regression coefficient parameter is fully efficient relative to the parametric counterpart when the survival time and a covariate are independent, as in the proportional hazards model. Relative to a more realistic case of the parametric additive hazards model with a Weibull baseline, the loss of efficiency of the semiparametric estimator of survival probability is moderate.     

Testing the linearity of negative binomial regression models

The negative binomial (NB) is frequently used to model overdispersed Poisson count data. To study the effect of a continuous covariate of interest in an NB model, a flexible procedure is used to model the covariate effect by fixed-knot cubic basis-splines or B-splines with a second-order difference penalty on the adjacent B-spline coefficients to avoid undersmoothing. A penalized likelihood is used to estimate parameters of the model. A penalized likelihood ratio test statistic is constructed for the null hypothesis of the linearity of the continuous covariate effect. When the number of knots is fixed, its limiting null distribution is the distribution of a linear combination of independent chi-squared random variables, each with one degree of freedom. The smoothing parameter value is determined by setting a specified value equal to the asymptotic expectation of the test statistic under the null hypothesis. The power performance of the proposed test is studied with simulation experiments.     

Modelling Survival Events with Longitudinal Covariates Measured with Error

In survival analysis, time-dependent covariates are usually present as longitudinal data collected periodically and measured with error. The longitudinal data can be assumed to follow a linear mixed effect model and Cox regression models may be used for modelling of survival events. The hazard rate of survival times depends on the underlying time-dependent covariate measured with error, which may be described by random effects. Most existing methods proposed for such models assume a parametric distribution assumption on the random effects and specify a normally distributed error term for the linear mixed effect model. These assumptions may not be always valid in practice. In this article, we propose a new likelihood method for Cox regression models with error-contaminated time-dependent covariates. The proposed method does not require any parametric distribution assumption on random effects and random errors. Asymptotic properties for parameter estimators are provided. Simulation results show that under certain situations the proposed methods are more efficient than the existing methods.     

Principal components regression estimator of the parameters in partially linear models

ABSTRACT

As a compromise between parametric regression and non-parametric regression models, partially linear models are frequently used in statistical modelling. This paper is concerned with the estimation of partially linear regression model in the presence of multicollinearity. Based on the profile least-squares approach, we propose a novel principal components regression (PCR) estimator for the parametric component. When some additional linear restrictions on the parametric component are available, we construct a corresponding restricted PCR estimator. Some simulations are conducted to examine the performance of our proposed estimators and the results are satisfactory. Finally, a real data example is analysed.     

Detecting discontinuities in nonparametric regression curves and surfaces

The existence of a discontinuity in a regression function can be inferred by comparing regression estimates based on the data lying on different sides of a point of interest. This idea has been used in earlier research by Hall and Titterington (1992), Müller (1992) and later authors. The use of nonparametric regression allows this to be done without assuming linear or other parametric forms for the continuous part of the underlying regression function. The focus of the present paper is on assessing the evidence for the presence of a discontinuity within a regression function through examination of the standardised differences of ‘left’ and ‘right’ estimators at a variety of covariate values. The calculations for the test are carried out through distributional results on quadratic forms. A graphical method in the form of a reference band to highlight the sources of the evidence for discontinuities is proposed. The methods are also developed for the two covariate case where there are additional issues associated with the presence of a jump location curve. Methods for estimating this curve are also developed. All the techniques, for the one and two covariate situations, are illustrated through applications.     

Bivariate zero-inflated negative binomial regression model with applications

Count data often display excessive number of zero outcomes than are expected in the Poisson regression model. The zero-inflated Poisson regression model has been suggested to handle zero-inflated data, whereas the zero-inflated negative binomial (ZINB) regression model has been fitted for zero-inflated data with additional overdispersion. For bivariate and zero-inflated cases, several regression models such as the bivariate zero-inflated Poisson (BZIP) and bivariate zero-inflated negative binomial (BZINB) have been considered. This paper introduces several forms of nested BZINB regression model which can be fitted to bivariate and zero-inflated count data. The mean–variance approach is used for comparing the BZIP and our forms of BZINB regression model in this study. A similar approach was also used by past researchers for defining several negative binomial and zero-inflated negative binomial regression models based on the appearance of linear and quadratic terms of the variance function. The nested BZINB regression models proposed in this study have several advantages; the likelihood ratio tests can be performed for choosing the best model, the models have flexible forms of marginal mean–variance relationship, the models can be fitted to bivariate zero-inflated count data with positive or negative correlations, and the models allow additional overdispersion of the two dependent variables.     

Goodness‐of‐fit methods for matched case‐control studies

The authors propose graphical and numerical methods for checking the adequacy of the logistic regression model for matched case‐control data. Their approach is based on the cumulative sum of residuals over the covariate or linear predictor. Under the assumed model, the cumulative residual process converges weakly to a centered Gaussian limit whose distribution can be approximated via computer simulation. The observed cumulative residual pattern can then be compared both visually and analytically to a certain number of simulated realizations of the approximate limiting process under the null hypothesis. The proposed techniques allow one to check the functional form of each covariate, the logistic link function as well as the overall model adequacy. The authors assess the performance of the proposed methods through simulation studies and illustrate them using data from a cardiovascular study.     

Estimation and diagnostic for skew-normal partially linear models

Partially linear models (PLMs) are an important tool in modelling economic and biometric data and are considered as a flexible generalization of the linear model by including a nonparametric component of some covariate into the linear predictor. Usually, the error component is assumed to follow a normal distribution. However, the theory and application (through simulation or experimentation) often generate a great amount of data sets that are skewed. The objective of this paper is to extend the PLMs allowing the errors to follow a skew-normal distribution [A. Azzalini, A class of distributions which includes the normal ones, Scand. J. Statist. 12 (1985), pp. 171–178], increasing the flexibility of the model. In particular, we develop the expectation-maximization (EM) algorithm for linear regression models and diagnostic analysis via local influence as well as generalized leverage, following [H. Zhu and S. Lee, Local influence for incomplete-data models, J. R. Stat. Soc. Ser. B 63 (2001), pp. 111–126]. A simulation study is also conducted to evaluate the efficiency of the EM algorithm. Finally, a suitable transformation is applied in a data set on ragweed pollen concentration in order to fit PLMs under asymmetric distributions. An illustrative comparison is performed between normal and skew-normal errors.     

A gradient-based algorithm for semiparametric models with missing covariates

In the parametric regression model, the covariate missing problem under missing at random is considered. It is often desirable to use flexible parametric or semiparametric models for the covariate distribution, which can reduce a potential misspecification problem. Recently, a completely nonparametric approach was developed by [H.Y. Chen, Nonparametric and semiparametric models for missing covariates in parameter regression, J. Amer. Statist. Assoc. 99 (2004), pp. 1176–1189; Z. Zhang and H.E. Rockette, On maximum likelihood estimation in parametric regression with missing covariates, J. Statist. Plann. Inference 47 (2005), pp. 206–223]. Although it does not require a model for the covariate distribution or the missing data mechanism, the proposed method assumes that the covariate distribution is supported only by observed values. Consequently, their estimator is a restricted maximum likelihood estimator (MLE) rather than the global MLE. In this article, we show the restricted semiparametric MLE could be very misleading in some cases. We discuss why this problem occurs and suggest an algorithm to obtain the global MLE. Then, we assess the performance of the proposed method via some simulation experiments.