Bayesian local influence analysis of skew-normal spatial dynamic panel data models

The existing studies on spatial dynamic panel data model (SDPDM) mainly focus on the normality assumption of response variables and random effects. This assumption may be inappropriate in some applications. This paper proposes a new SDPDM by assuming that response variables and random effects follow the multivariate skew-normal distribution. A Markov chain Monte Carlo algorithm is developed to evaluate Bayesian estimates of unknown parameters and random effects in skew-normal SDPDM by combining the Gibbs sampler and the Metropolis–Hastings algorithm. A Bayesian local influence analysis method is developed to simultaneously assess the effect of minor perturbations to the data, priors and sampling distributions. Simulation studies are conducted to investigate the finite-sample performance of the proposed methodologies. An example is illustrated by the proposed methodologies.     

On local influence for elliptical linear models

The local influence method plays an important role in regression diagnostics and sensitivity analysis. To implement it, we need the Delta matrix for the underlying scheme of perturbations, in addition to the observed information matrix under the postulated model. Galea, Paula and Bolfarine (1997) has recently given the observed information matrix and the Delta matrix for a scheme of scale perturbations and has assessed of local influence for elliptical linear regression models. In the present paper, we consider the same elliptical linear regression models. We study the schemes of scale, predictor and response perturbations, and obtain their corresponding Delta matrices, respectively. To illustrate the methodology for assessment of local influence for these schemes and the implementation of the obtained results, we give an example.     

Bayesian dynamic models for survival data with a cure fraction

In this paper, we propose a new class of semi-parametric cure rate models. Specifically, we construct dynamic models for piecewise hazard functions over a finite partition of the time axis. Allowing the size of partition and the levels of baseline hazard to be random, our proposed models provide a great flexibility in controlling the degree of parametricity in the right tail of the survival distribution and the amount of correlations among the log-baseline hazard levels. Several properties of the proposed models are derived, and propriety of the implied posteriors with improper noninformative priors for regression coefficients based on the proposed models is established for the fixed partition of the time axis. In addition, an efficient reversible jump computational algorithm is developed for carrying out posterior computation. A real data set from a melanoma clinical trial is analyzed in detail to further demonstrate the proposed methodology.     

Bayesian Weibull tree models for survival analysis of clinico-genomic data

An important goal of research involving gene expression data for outcome prediction is to establish the ability of genomic data to define clinically relevant risk factors. Recent studies have demonstrated that microarray data can successfully cluster patients into low- and high-risk categories. However, the need exists for models which examine how genomic predictors interact with existing clinical factors and provide personalized outcome predictions. We have developed clinico-genomic tree models for survival outcomes which use recursive partitioning to subdivide the current data set into homogeneous subgroups of patients, each with a specific Weibull survival distribution. These trees can provide personalized predictive distributions of the probability of survival for individuals of interest. Our strategy is to fit multiple models; within each model we adopt a prior on the Weibull scale parameter and update this prior via Empirical Bayes whenever the sample is split at a given node. The decision to split is based on a Bayes factor criterion. The resulting trees are weighted according to their relative likelihood values and predictions are made by averaging over models. In a pilot study of survival in advanced stage ovarian cancer we demonstrate that clinical and genomic data are complementary sources of information relevant to survival, and we use the exploratory nature of the trees to identify potential genomic biomarkers worthy of further study.     

Bayesian analysis of generalized odds-rate hazards models for survival data

In the analysis of censored survival data Cox proportional hazards model (1972) is extremely popular among the practitioners. However, in many real-life situations the proportionality of the hazard ratios does not seem to be an appropriate assumption. To overcome such a problem, we consider a class of nonproportional hazards models known as generalized odds-rate class of regression models. The class is general enough to include several commonly used models, such as proportional hazards model, proportional odds model, and accelerated life time model. The theoretical and computational properties of these models have been re-examined. The propriety of the posterior has been established under some mild conditions. A simulation study is conducted and a detailed analysis of the data from a prostate cancer study is presented to further illustrate the proposed methodology.     

Assessing local influence for elliptical linear models under equality constraints

ABSTRACT

In this article, we study the local influence for the elliptical linear regression model under equality constraints. We first obtain the parameter estimators of this model using the penalized log-likelihood function and iterative techniques. Then we obtain the diagnostics under the perturbations of constant variance, responses, and explanatory variables in the spirit of Cook (1986 Cook, R.D. (1986). Assessment of local influence. J. Royal Stat. Soc. Ser. B 48(2):133–169. [Google Scholar]). Finally, a numerical example on the data set of the salinity of water is given to illustrate the theoretical results.     

Bayesian gamma frailty models for survival data with semi-competing risks and treatment switching

Motivated from a colorectal cancer study, we propose a class of frailty semi-competing risks survival models to account for the dependence between disease progression time, survival time, and treatment switching. Properties of the proposed models are examined and an efficient Gibbs sampling algorithm using the collapsed Gibbs technique is developed. A Bayesian procedure for assessing the treatment effect is also proposed. The deviance information criterion (DIC) with an appropriate deviance function and Logarithm of the pseudomarginal likelihood (LPML) are constructed for model comparison. A simulation study is conducted to examine the empirical performance of DIC and LPML and as well as the posterior estimates. The proposed method is further applied to analyze data from a colorectal cancer study.     

Bayesian inference for Heston-STAR models

The Heston-STAR model is a new class of stochastic volatility models defined by generalizing the Heston model to allow the volatility of the volatility process as well as the correlation between asset log-returns and variance shocks to change across different regimes via smooth transition autoregressive (STAR) functions. The form of the STAR functions is very flexible, much more so than the functions introduced in Jones (J Econom 116:181–224, 2003), and provides the framework for a wide range of stochastic volatility models. A Bayesian inference approach using data augmentation techniques is used for the parameters of our model. We also explore goodness of fit of our Heston-STAR model. Our analysis of the S&P 500 and VIX index demonstrates that the Heston-STAR model is more capable of dealing with large market fluctuations (such as in 2008) compared to the standard Heston model.     

Stepwise local influence in generalized autoregressive conditional heteroskedasticity models

Detection of outliers or influential observations is an important work in statistical modeling, especially for the correlated time series data. In this paper we propose a new procedure to detect patch of influential observations in the generalized autoregressive conditional heteroskedasticity (GARCH) model. Firstly we compare the performance of innovative perturbation scheme, additive perturbation scheme and data perturbation scheme in local influence analysis. We find that the innovative perturbation scheme give better result than other two schemes although this perturbation scheme may suffer from masking effects. Then we use the stepwise local influence method under innovative perturbation scheme to detect patch of influential observations and uncover the masking effects. The simulated studies show that the new technique can successfully detect a patch of influential observations or outliers under innovative perturbation scheme. The analysis based on simulation studies and two real data sets show that the stepwise local influence method under innovative perturbation scheme is efficient for detecting multiple influential observations and dealing with masking effects in the GARCH model.     

Assessing local cluster influence in generalized linear mixed models

This paper investigates local influence measures for assessing cluster influence in generalized linear mixed models. Several cluster-specific perturbation schemes are considered. The proposed local influence diagnostics are applied to analyse maternity length of inpatient stay data where individual observations are nested within hospitals and the relative performance of hospitals is of interest.     

Bayesian estimation and influence diagnostics of generalized partially linear mixed-effects models for longitudinal data

This paper develops a Bayesian approach to obtain the joint estimates of unknown parameters, nonparametric functions and random effects in generalized partially linear mixed models (GPLMMs), and presents three case deletion influence measures to identify influential observations based on the φ-divergence, Cook's posterior mean distance and Cook's posterior mode distance of parameters. Fisher's iterative scoring algorithm is developed to evaluate the posterior modes of parameters in GPLMMs. The first-order approximation to Cook's posterior mode distance is presented. The computationally feasible formulae for the φ-divergence diagnostic and Cook's posterior mean distance are given. Several simulation studies and an example are presented to illustrate our proposed methodologies.     

On estimation and local influence analysis for measurement errors models under heavy-tailed distributions

Scale mixtures of normal distributions form a class of symmetric thick-tailed distributions that includes the normal one as a special case. In this paper we consider local influence analysis for measurement error models (MEM) when the random error and the unobserved value of the covariates jointly follow scale mixtures of normal distributions, providing an appealing robust alternative to the usual Gaussian process in measurement error models. In order to avoid difficulties in estimating the parameter of the mixing variable, we fixed it previously, as recommended by Lange et al. (J Am Stat Assoc 84:881–896, 1989) and Berkane et al. (Comput Stat Data Anal 18:255–267, 1994). The local influence method is used to assess the robustness aspects of the parameter estimates under some usual perturbation schemes. However, as the observed log-likelihood associated with this model involves some integrals, Cook’s well–known approach may be hard to apply to obtain measures of local influence. Instead, we develop local influence measures following the approach of Zhu and Lee (J R Stat Soc Ser B 63:121–126, 2001), which is based on the EM algorithm. Results obtained from a real data set are reported, illustrating the usefulness of the proposed methodology, its relative simplicity, adaptability and practical usage.     

Bayesian quantile regression for single-index models

Using an asymmetric Laplace distribution, which provides a mechanism for Bayesian inference of quantile regression models, we develop a fully Bayesian approach to fitting single-index models in conditional quantile regression. In this work, we use a Gaussian process prior for the unknown nonparametric link function and a Laplace distribution on the index vector, with the latter motivated by the recent popularity of the Bayesian lasso idea. We design a Markov chain Monte Carlo algorithm for posterior inference. Careful consideration of the singularity of the kernel matrix, and tractability of some of the full conditional distributions leads to a partially collapsed approach where the nonparametric link function is integrated out in some of the sampling steps. Our simulations demonstrate the superior performance of the Bayesian method versus the frequentist approach. The method is further illustrated by an application to the hurricane data.     

Bayesian inference for double SARMA models

In this paper, we present a Bayesian analysis of double seasonal autoregressive moving average models. We first consider the problem of estimating unknown lagged errors in the moving average part using non linear least squares method, and then using natural conjugate and Jeffreys’ priors we approximate the marginal posterior distributions to be multivariate t and gamma distributions for the model coefficients and precision, respectively. We evaluate the proposed Bayesian methodology using simulation study, and apply to real-world hourly electricity load data sets.     

Bayesian clustering for row effects models

We deal with two-way contingency tables having ordered column categories. We use a row effects model wherein each interaction term is assumed to have a multiplicative form involving a row effect parameter and a fixed column score. We propose a methodology to cluster row effects in order to simplify the interaction structure and to enhance the interpretation of the model. Our method uses a product partition model with a suitable specification of the cohesion function, so that we can carry out our analysis on a collection of models of varying dimensions using a straightforward MCMC sampler. The methodology is illustrated with reference to simulated and real data sets.     

Semiparametric Bayesian inference for regression models

This paper presents a method for Bayesian inference for the regression parameters in a linear model with independent and identically distributed errors that does not require the specification of a parametric family of densities for the error distribution. This method first selects a nonparametric kernel density estimate of the error distribution which is unimodal and based on the least-squares residuals. Once the error distribution is selected, the Metropolis algorithm is used to obtain the marginal posterior distribution of the regression parameters. The methodology is illustrated with data sets, and its performance relative to standard Bayesian techniques is evaluated using simulation results.     

Bayesian conditional inference for Rasch models

This paper is concerned with Bayesian inference in psychometric modeling. It treats conditional likelihood functions obtained from discrete conditional probability distributions which are generalizations of the hypergeometric distribution. The influence of nuisance parameters is eliminated by conditioning on observed values of their sufficient statistics, and Bayesian considerations are only referred to parameters of interest. Since such a combination of techniques to deal with both types of parameters is less common in psychometrics, a wider scope in future research may be gained. The focus is on the evaluation of the empirical appropriateness of assumptions of the Rasch model, thereby pointing to an alternative to the frequentists’ approach which is dominating in this context. A number of examples are discussed. Some are very straightforward to apply. Others are computationally intensive and may be unpractical. The suggested procedure is illustrated using real data from a study on vocational education.     

Adaptive sampling for Bayesian geospatial models

Bayesian hierarchical modeling with Gaussian process random effects provides a popular approach for analyzing point-referenced spatial data. For large spatial data sets, however, generic posterior sampling is infeasible due to the extremely high computational burden in decomposing the spatial correlation matrix. In this paper, we propose an efficient algorithm—the adaptive griddy Gibbs (AGG) algorithm—to address the computational issues with large spatial data sets. The proposed algorithm dramatically reduces the computational complexity. We show theoretically that the proposed method can approximate the real posterior distribution accurately. The sufficient number of grid points for a required accuracy has also been derived. We compare the performance of AGG with that of the state-of-the-art methods in simulation studies. Finally, we apply AGG to spatially indexed data concerning building energy consumption.     

Bayesian hierarchical models for linear networks

The purpose of this study is to highlight dangerous motorways via estimating the intensity of accidents and study its pattern across the UK motorway network. Two methods have been developed to achieve this aim. First, the motorway-specific intensity is estimated by using a homogeneous Poisson process. The heterogeneity across motorways is incorporated using two-level hierarchical models. The data structure is multilevel since each motorway consists of junctions that are joined by grouped segments. In the second method, the segment-specific intensity is estimated. The homogeneous Poisson process is used to model accident data within grouped segments but heterogeneity across grouped segments is incorporated using three-level hierarchical models. A Bayesian method via Markov Chain Monte Carlo is used to estimate the unknown parameters in the models and the sensitivity to the choice of priors is assessed. The performance of the proposed models is evaluated by a simulation study and an application to traffic accidents in 2016 on the UK motorway network. The deviance information criterion (DIC) and the widely applicable information criterion (WAIC) are employed to choose between models.