A robust multivariate measurement error model with skew-normal/independent distributions and Bayesian MCMC implementation

Skew-normal/independent distributions are a class of asymmetric thick-tailed distributions that include the skew-normal distribution as a special case. In this paper, we explore the use of Markov Chain Monte Carlo (MCMC) methods to develop a Bayesian analysis in multivariate measurement errors models. We propose the use of skew-normal/independent distributions to model the unobserved value of the covariates (latent variable) and symmetric normal/independent distributions for the random errors term, providing an appealing robust alternative to the usual symmetric process in multivariate measurement errors models. Among the distributions that belong to this class of distributions, we examine univariate and multivariate versions of the skew-normal, skew-t, skew-slash and skew-contaminated normal distributions. The results and methods are applied to a real data set.     

Flexible mixture modeling via the multivariate t distribution with?the?Box-Cox transformation: an?alternative to?the?skew-t distribution

Cluster analysis is the automated search for groups of homogeneous observations in a data set. A popular modeling approach for clustering is based on finite normal mixture models, which assume that each cluster is modeled as a multivariate normal distribution. However, the normality assumption that each component is symmetric is often unrealistic. Furthermore, normal mixture models are not robust against outliers; they often require extra components for modeling outliers and/or give a poor representation of the data. To address these issues, we propose a new class of distributions, multivariate t distributions with the Box-Cox transformation, for mixture modeling. This class of distributions generalizes the normal distribution with the more heavy-tailed t distribution, and introduces skewness via the Box-Cox transformation. As a result, this provides a unified framework to simultaneously handle outlier identification and data transformation, two interrelated issues. We describe an Expectation-Maximization algorithm for parameter estimation along with transformation selection. We demonstrate the proposed methodology with three real data sets and simulation studies. Compared with a wealth of approaches including the skew-t mixture model, the proposed t mixture model with the Box-Cox transformation performs favorably in terms of accuracy in the assignment of observations, robustness against model misspecification, and selection of the number of components.     

Double Generalized Spatial Econometric Models

The authors offer a unified method extending traditional spatial dependence with normally distributed error terms to a new class of spatial models based on the biparametric exponential family of distributions. Joint modeling of the mean and variance (or precision) parameters is proposed in this family of distributions, including spatial correlation. The proposed models are applied for analyzing Colombian land concentration, assuming that the variable of interest follows normal, gamma, and beta distributions. In all cases, the models were fitted using Bayesian methodology with the Markov Chain Monte Carlo (MCMC) algorithm for sampling from joint posterior distribution of the model parameters.     

Bayesian analysis of skew-normal independent linear mixed models with heterogeneity in the random-effects population

We present a new class of models to fit longitudinal data, obtained with a suitable modification of the classical linear mixed-effects model. For each sample unit, the joint distribution of the random effect and the random error is a finite mixture of scale mixtures of multivariate skew-normal distributions. This extension allows us to model the data in a more flexible way, taking into account skewness, multimodality and discrepant observations at the same time. The scale mixtures of skew-normal form an attractive class of asymmetric heavy-tailed distributions that includes the skew-normal, skew-Student-t, skew-slash and the skew-contaminated normal distributions as special cases, being a flexible alternative to the use of the corresponding symmetric distributions in this type of models. A simple efficient MCMC Gibbs-type algorithm for posterior Bayesian inference is employed. In order to illustrate the usefulness of the proposed methodology, two artificial and two real data sets are analyzed.     

BINARY REGRESSION WITH A CLASS OF SKEWED t LINK MODELS

ABSTRACT

In this paper we propose a class of skewed t link models for analyzing binary response data with covariates. It is a class of asymmetric link models designed to improve the overall fit when commonly used symmetric links, such as the logit and probit links, do not provide the best fit available for a given binary response dataset. Introducing a skewed t distribution for the underlying latent variable, we develop the class of models. For the analysis of the models, a Bayesian and non-Bayesian methods are pursued using a Markov chain Monte Carlo (MCMC) sampling based approach. Necessary theories involved in modelling and computation are provided. Finally, a simulation study and a real data example are used to illustrate the proposed methodology.     

A multiple group item response theory model with centered skew-normal latent trait distributions under a Bayesian framework

Very often, in psychometric research, as in educational assessment, it is necessary to analyze item response from clustered respondents. The multiple group item response theory (IRT) model proposed by Bock and Zimowski [12] provides a useful framework for analyzing such type of data. In this model, the selected groups of respondents are of specific interest such that group-specific population distributions need to be defined. The usual assumption for parameter estimation in this model, which is that the latent traits are random variables following different symmetric normal distributions, has been questioned in many works found in the IRT literature. Furthermore, when this assumption does not hold, misleading inference can result. In this paper, we consider that the latent traits for each group follow different skew-normal distributions, under the centered parameterization. We named it skew multiple group IRT model. This modeling extends the works of Azevedo et al. [4], Bazán et al. [11] and Bock and Zimowski [12] (concerning the latent trait distribution). Our approach ensures that the model is identifiable. We propose and compare, concerning convergence issues, two Monte Carlo Markov Chain (MCMC) algorithms for parameter estimation. A simulation study was performed in order to evaluate parameter recovery for the proposed model and the selected algorithm concerning convergence issues. Results reveal that the proposed algorithm recovers properly all model parameters. Furthermore, we analyzed a real data set which presents asymmetry concerning the latent traits distribution. The results obtained by using our approach confirmed the presence of negative asymmetry for some latent trait distributions.     

Inference on progressive-stress model for the exponentiated exponential distribution under type-II progressive hybrid censoring

In this paper, progressive-stress accelerated life tests are applied when the lifetime of a product under design stress follows the exponentiated distribution [G(x)]^α. The baseline distribution, G(x), follows a general class of distributions which includes, among others, Weibull, compound Weibull, power function, Pareto, Gompertz, compound Gompertz, normal and logistic distributions. The scale parameter of G(x) satisfies the inverse power law and the cumulative exposure model holds for the effect of changing stress. A special case for an exponentiated exponential distribution has been discussed. Using type-II progressive hybrid censoring and MCMC algorithm, Bayes estimates of the unknown parameters based on symmetric and asymmetric loss functions are obtained and compared with the maximum likelihood estimates. Normal approximation and bootstrap confidence intervals for the unknown parameters are obtained and compared via a simulation study.     

On diagnostics in multivariate measurement error models under asymmetric heavy-tailed distributions

In this paper, we discuss the extension of some diagnostic procedures to multivariate measurement error models with scale mixtures of skew-normal distributions (Lachos et?al., Statistics 44:541?C556, 2010c). This class provides a useful generalization of normal (and skew-normal) measurement error models since the random term distributions cover symmetric, asymmetric and heavy-tailed distributions, such as skew-t, skew-slash and skew-contaminated normal, among others. Inspired by the EM algorithm proposed by Lachos et?al. (Statistics 44:541?C556, 2010c), we develop a local influence analysis for measurement error models, following Zhu and Lee??s (J R Stat Soc B 63:111?C126, 2001) approach. This is because the observed data log-likelihood function associated with the proposed model is somewhat complex and Cook??s well-known approach can be very difficult to apply to achieve local influence measures. Some useful perturbation schemes are also discussed. In addition, a score test for assessing the homogeneity of the skewness parameter vector is presented. Finally, the methodology is exemplified through a real data set, illustrating the usefulness of the proposed methodology.     

Computation for intrinsic variable selection in normal regression models via expected-posterior prior

In this paper, we focus on the variable selection problem in normal regression models using the expected-posterior prior methodology. We provide a straightforward MCMC scheme for the derivation of the posterior distribution, as well as Monte Carlo estimates for the computation of the marginal likelihood and posterior model probabilities. Additionally, for large spaces, a model search algorithm based on $\mathit{MC}^{3}$ is constructed. The proposed methodology is applied in two real life examples, already used in the relevant literature of objective variable selection. In both examples, uncertainty over different training samples is taken into consideration.     

Local power properties of some asymptotic tests in symmetric linear regression models

In this paper we obtain asymptotic expansions, up to order n^−1/2 and under a sequence of Pitman alternatives, for the nonnull distribution functions of the likelihood ratio, Wald, score and gradient test statistics in the class of symmetric linear regression models. This is a wide class of models which encompasses the t model and several other symmetric distributions with longer-than normal tails. The asymptotic distributions of all four statistics are obtained for testing a subset of regression parameters. Furthermore, in order to compare the finite-sample performance of these tests in this class of models, Monte Carlo simulations are presented. An empirical application to a real data set is considered for illustrative purposes.     

Calibration model with skew scale mixtures of normal distributions

This work presents a new linear calibration model with replication by assuming that the error of the model follows a skew scale mixture of the normal distributions family, which is a class of asymmetric thick-tailed distributions that includes the skew normal distribution and symmetric distributions. In the literature, most calibration models assume that the errors are normally distributed. However, the normal distribution is not suitable when there are atypical observations and asymmetry. The estimation of the calibration model parameters are done numerically by the EM algorithm. A simulation study is carried out to verify the properties of the maximum likelihood estimators. This new approach is applied to a real dataset from a chemical analysis.     

Bayesian inference for joint location and scale nonlinear models with skew-normal errors

A regression model with skew-normal errors provides a useful extension for ordinary normal regression models when the dataset under consideration involves asymmetric outcomes. In this article, we explore the use of Markov Chain Monte Carlo (MCMC) methods to develop a Bayesian analysis for joint location and scale nonlinear models with skew-normal errors, which relax the normality assumption and include the normal one as a special case. The main advantage of these class of distributions is that they have a nice hierarchical representation that allows the implementation of MCMC methods to simulate samples from the joint posterior distribution. Finally, simulation studies and a real example are used to illustrate the proposed methodology.     

A robust class of homoscedastic nonlinear regression models

In this paper, we examine a nonlinear regression (NLR) model with homoscedastic errors which follows a flexible class of two-piece distributions based on the scale mixtures of normal (TP-SMN) family. The objective of using this family is to develop a robust NLR model. The TP-SMN is a rich class of distributions that covers symmetric/asymmetric and lightly/heavy-tailed distributions and is an alternative family to the well-known scale mixtures of skew-normal (SMSN) family studied by Branco and Dey [35]. A key feature of this study is using a new suitable hierarchical representation of the family to obtain maximum-likelihood estimates of model parameters via an EM-type algorithm. The performances of the proposed robust model are demonstrated using simulated and some natural real datasets and also compared to other well-known NLR models.     

Improved Score Tests in Symmetric Linear Regression Models

The class of symmetric linear regression models has the normal linear regression model as a special case and includes several models that assume that the errors follow a symmetric distribution with longer-than-normal tails. An important member of this class is the t linear regression model, which is commonly used as an alternative to the usual normal regression model when the data contain extreme or outlying observations. In this article, we develop second-order asymptotic theory for score tests in this class of models. We obtain Bartlett-corrected score statistics for testing hypotheses on the regression and the dispersion parameters. The corrected statistics have chi-squared distributions with errors of order O(n ^?3/2), n being the sample size. The corrections represent an improvement over the corresponding original Rao's score statistics, which are chi-squared distributed up to errors of order O(n ^?1). Simulation results show that the corrected score tests perform much better than their uncorrected counterparts in samples of small or moderate size.     

Influence diagnostics in the capital asset pricing model under elliptical distributions

In this paper we consider the Capital Asset Pricing Model under Elliptical (symmetric) Distributions. This class of distributions, which contains the normal distribution, t, contaminated normal and power exponential, among others, offers a more flexible framework for modelling asset prices or returns. In order to analyze the sensibility to possible outliers and/or atypical returns of the maximum likelihood estimators, the local influence method was implemented. The results are illustrated by using a set of shares from companies who trade in the Chilean Stock Market. Our main conclusion is that symmetric distributions having heavier tails than those of the normal distribution, especially the t distribution with small degrees of freedom, show a better fit and allow the reduction of the influence of atypical returns in the maximum likelihood estimators.     

Bayesian analysis of censored linear regression models with scale mixtures of normal distributions

As is the case of many studies, the data collected are limited and an exact value is recorded only if it falls within an interval range. Hence, the responses can be either left, interval or right censored. Linear (and nonlinear) regression models are routinely used to analyze these types of data and are based on normality assumptions for the errors terms. However, those analyzes might not provide robust inference when the normality assumptions are questionable. In this article, we develop a Bayesian framework for censored linear regression models by replacing the Gaussian assumptions for the random errors with scale mixtures of normal (SMN) distributions. The SMN is an attractive class of symmetric heavy-tailed densities that includes the normal, Student-t, Pearson type VII, slash and the contaminated normal distributions, as special cases. Using a Bayesian paradigm, an efficient Markov chain Monte Carlo algorithm is introduced to carry out posterior inference. A new hierarchical prior distribution is suggested for the degrees of freedom parameter in the Student-t distribution. The likelihood function is utilized to compute not only some Bayesian model selection measures but also to develop Bayesian case-deletion influence diagnostics based on the q-divergence measure. The proposed Bayesian methods are implemented in the R package BayesCR. The newly developed procedures are illustrated with applications using real and simulated data.     

Estimation and diagnostics for heteroscedastic nonlinear regression models based on scale mixtures of skew-normal distributions

An extension of some standard likelihood based procedures to heteroscedastic nonlinear regression models under scale mixtures of skew-normal (SMSN) distributions is developed. This novel class of models provides a useful generalization of the heteroscedastic symmetrical nonlinear regression models (Cysneiros et al., 2010), since the random term distributions cover both symmetric as well as asymmetric and heavy-tailed distributions such as skew-t, skew-slash, skew-contaminated normal, among others. A simple EM-type algorithm for iteratively computing maximum likelihood estimates of the parameters is presented and the observed information matrix is derived analytically. In order to examine the performance of the proposed methods, some simulation studies are presented to show the robust aspect of this flexible class against outlying and influential observations and that the maximum likelihood estimates based on the EM-type algorithm do provide good asymptotic properties. Furthermore, local influence measures and the one-step approximations of the estimates in the case-deletion model are obtained. Finally, an illustration of the methodology is given considering a data set previously analyzed under the homoscedastic skew-t nonlinear regression model.     

Robust linear mixed models with skew-normal independent distributions from a Bayesian perspective

Linear mixed models were developed to handle clustered data and have been a topic of increasing interest in statistics for the past 50 years. Generally, the normality (or symmetry) of the random effects is a common assumption in linear mixed models but it may, sometimes, be unrealistic, obscuring important features of among-subjects variation. In this article, we utilize skew-normal/independent distributions as a tool for robust modeling of linear mixed models under a Bayesian paradigm. The skew-normal/independent distributions is an attractive class of asymmetric heavy-tailed distributions that includes the skew-normal distribution, skew-t, skew-slash and the skew-contaminated normal distributions as special cases, providing an appealing robust alternative to the routine use of symmetric distributions in this type of models. The methods developed are illustrated using a real data set from Framingham cholesterol study.     

Bayesian analysis of circular distributions based on non-negative trigonometric sums

ABSTRACT

Fernández-Durán [Circular distributions based on nonnegative trigonometric sums. Biometrics. 2004;60:499–503] developed a new family of circular distributions based on non-negative trigonometric sums that is suitable for modelling data sets that present skewness and/or multimodality. In this paper, a Bayesian approach to deriving estimates of the unknown parameters of this family of distributions is presented. Because the parameter space is the surface of a hypersphere and the dimension of the hypersphere is an unknown parameter of the distribution, the Bayesian inference must be based on transdimensional Markov Chain Monte Carlo (MCMC) algorithms to obtain samples from the high-dimensional posterior distribution. The MCMC algorithm explores the parameter space by moving along great circles on the surface of the hypersphere. The methodology is illustrated with real and simulated data sets.     

Sampling-based Inference of Time Deformation Models with Heavy Tail Distributions

This article focuses on simulation-based inference for the time-deformation models directed by a duration process. In order to better capture the heavy tail property of the time series of financial asset returns, the innovation of the observation equation is subsequently assumed to have a Student-t distribution. Suitable Markov chain Monte Carlo (MCMC) algorithms, which are hybrids of Gibbs and slice samplers, are proposed for estimation of the parameters of these models. In the algorithms, the parameters of the models can be sampled either directly from known distributions or through an efficient slice sampler. The states are simulated one at a time by using a Metropolis-Hastings method, where the proposal distributions are sampled through a slice sampler. Simulation studies conducted in this article suggest that our extended models and accompanying MCMC algorithms work well in terms of parameter estimation and volatility forecast.