Robust Principal Component Functional Logistic Regression

In this article, we discuss the estimation of the parameter function for a functional logistic regression model in the presence of outliers. We consider ways that allow for the parameter estimator to be resistant to outliers, in addition to minimizing multicollinearity and reducing the high dimensionality, which is inherent with functional data. To achieve this, the functional covariates and functional parameter of the model are approximated in a finite-dimensional space generated by an appropriate basis. This approach reduces the functional model to a standard multiple logistic model with highly collinear covariates and potential high-dimensionality issues. The proposed estimator tackles these issues and also minimizes the effect of functional outliers. Results from a simulation study and a real world example are also presented to illustrate the performance of the proposed estimator.     

Bayesian covariance estimation and inference in latent Gaussian process models

This paper describes inference methods for functional data under the assumption that the functional data of interest are smooth latent functions, characterized by a Gaussian process, which have been observed with noise over a finite set of time points. The methods we propose are completely specified in a Bayesian environment that allows for all inferences to be performed through a simple Gibbs sampler. Our main focus is in estimating and describing uncertainty in the covariance function. However, these models also encompass functional data estimation, functional regression where the predictors are latent functions, and an automatic approach to smoothing parameter selection. Furthermore, these models require minimal assumptions on the data structure as the time points for observations do not need to be equally spaced, the number and placement of observations are allowed to vary among functions, and special treatment is not required when the number of functional observations is less than the dimensionality of those observations. We illustrate the effectiveness of these models in estimating latent functional data, capturing variation in the functional covariance estimate, and in selecting appropriate smoothing parameters in both a simulation study and a regression analysis of medfly fertility data.     

Nonlinear functional models for functional responses in reproducing kernel hilbert spaces

The author proposes an extension of reproducing kernel Hilbert space theory which provides a new framework for analyzing functional responses with regression models. The approach only presumes a general nonlinear regression structure, as opposed to existing linear regression models. The author proposes generalized cross‐validation for automatic smoothing parameter estimation. He illustrates the use of the new estimator both on real and simulated data.     

函数型变量倾斜分位回归模型及其应用

本文考虑函数型数据的结构特征,针对两类函数型变量分位回归模型（函数型因变量对标量自变量和函数型因变量对函数型自变量）,基于函数型倾斜分位曲线的定义构建新型函数型倾斜分位回归模型。对于第二类模型,本文分别考虑样条基函数对模型系数展开和函数型主成分基函数对函数型自变量展开,得到倾斜分位回归模型的基本形式。参数估计采用成分梯度Boosting算法最小化加权非对称损失函数,提高计算效率。在理论上证明了倾斜分位回归模型的系数估计量均服从渐近正态分布。模拟和实证研究结果显示,倾斜分位回归模型比已有的逐点分位回归模型具有更好的拟合效果。根据积分均方预测误差准则,本文提出的模型有一致较好的预测能力。     

Robust group-Lasso for functional regression model

In this article, we consider the problem of selecting functional variables using the L1 regularization in a functional linear regression model with a scalar response and functional predictors, in the presence of outliers. Since the LASSO is a special case of the penalized least-square regression with L1 penalty function, it suffers from the heavy-tailed errors and/or outliers in data. Recently, Least Absolute Deviation (LAD) and the LASSO methods have been combined (the LAD-LASSO regression method) to carry out robust parameter estimation and variable selection simultaneously for a multiple linear regression model. However, variable selection of the functional predictors based on LASSO fails since multiple parameters exist for a functional predictor. Therefore, group LASSO is used for selecting functional predictors since group LASSO selects grouped variables rather than individual variables. In this study, we propose a robust functional predictor selection method, the LAD-group LASSO, for a functional linear regression model with a scalar response and functional predictors. We illustrate the performance of the LAD-group LASSO on both simulated and real data.     

Rank estimation for the functional linear model

This article discusses the estimation of the parameter function for a functional linear regression model under heavy-tailed errors' distributions and in the presence of outliers. Standard approaches of reducing the high dimensionality, which is inherent in functional data, are considered. After reducing the functional model to a standard multiple linear regression model, a weighted rank-based procedure is carried out to estimate the regression parameters. A Monte Carlo simulation and a real-world example are used to show the performance of the proposed estimator and a comparison made with the least-squares and least absolute deviation estimators.     

Functional logistic regression with fused lasso penalty

This study considers the binary classification of functional data collected in the form of curves. In particular, we assume a situation in which the curves are highly mixed over the entire domain, so that the global discriminant analysis based on the entire domain is not effective. This study proposes an interval-based classification method for functional data: the informative intervals for classification are selected and used for separating the curves into two classes. The proposed method, called functional logistic regression with fused lasso penalty, combines the functional logistic regression as a classifier and the fused lasso for selecting discriminant segments. The proposed method automatically selects the most informative segments of functional data for classification by employing the fused lasso penalty and simultaneously classifies the data based on the selected segments using the functional logistic regression. The effectiveness of the proposed method is demonstrated with simulated and real data examples.     

Joint detection for functional polynomial regression with autoregressive errors

In this article, we are concerned with detecting the true structure of a functional polynomial regression with autoregressive (AR) errors. The first issue is to detect which orders of the polynomial are significant in functional polynomial regression. The second issue is to detect which orders of the AR process in the AR errors are significant. We propose a shrinkage method to deal with the two problems: polynomial order selection and autoregressive order selection. Simulation studies demonstrate that the new method can identify the true structure. One empirical example is also presented to illustrate the usefulness of our method.     

Nonparametric regression for functional data: Automatic smoothing parameter selection

We study regression estimation when the explanatory variable is functional. Nonparametric estimates of the regression operator have been recently introduced. They depend on a smoothing factor which controls its behavior, and the aim of our work is to construct some data-driven criterion for choosing this smoothing parameter. The criterion can be formulated in terms of a functional version of cross-validation ideas. Under mild assumptions on the unknown regression operator, it is seen that this rule is asymptotically optimal. As by-products of this result, we state some asymptotic equivalences for several measures of accuracy for nonparametric estimate of the regression operator. We also present general inequalities for bounding moments of random sums involving functional variables. Finally, a short simulation study is carried out to illustrate the behavior of our method for finite samples.     

Bootstrap in functional linear regression

We have considered the functional linear model with scalar response and functional explanatory variable. One of the most popular methodologies for estimating the model parameter is based on functional principal components analysis (FPCA). In recent literature, weak convergence for a wide class of FPCA-type estimates has been proved, and consequently asymptotic confidence sets can be built. In this paper, we have proposed an alternative approach in order to obtain pointwise confidence intervals by means of a bootstrap procedure, for which we have obtained its asymptotic validity. Besides, a simulation study allows us to compare the practical behaviour of asymptotic and bootstrap confidence intervals in terms of coverage rates for different sample sizes.     

Functional quasi-likelihood regression models with smooth random effects

Summary. We propose a class of semiparametric functional regression models to describe the influence of vector-valued covariates on a sample of response curves. Each observed curve is viewed as the realization of a random process, composed of an overall mean function and random components. The finite dimensional covariates influence the random components of the eigenfunction expansion through single-index models that include unknown smooth link and variance functions. The parametric components of the single-index models are estimated via quasi-score estimating equations with link and variance functions being estimated nonparametrically. We obtain several basic asymptotic results. The functional regression models proposed are illustrated with the analysis of a data set consisting of egg laying curves for 1000 female Mediterranean fruit-flies (medflies).     

P-spline Estimation of Functional Classification Methods for Improving the Quality in the Food Industry

The aim of this article is to improve the quality of cookies production by classifying them as good or bad from the curves of resistance of dough observed during the kneading process. As the predictor variable is functional, functional classification methodologies such as functional logit regression and functional discriminant analysis are considered. A P-spline approximation of the sample curves is proposed to improve the classification ability of these models and to suitably estimate the relationship between the quality of cookies and the resistance of dough. Inference results on the functional parameters and related odds ratios are obtained using the asymptotic normality of the maximum likelihood estimators under the classical regularity conditions. Finally, the classification results are compared with alternative functional data analysis approaches such as componentwise classification on the logit regression model.     

Nonparametric regression method with functional covariates and multivariate response

Nonparametric regression methods have been widely studied in functional regression analysis in the context of functional covariates and univariate response, but it is not the case for functional covariates with multivariate response. In this paper, we present two new solutions for the latter problem: the first is to directly extend the nonparametric method for univariate response to multivariate response, and in the second, the correlation among different responses is incorporated into the model. The asymptotic properties of the estimators are studied, and the effectiveness of the proposed methods is demonstrated through several simulation studies and a real data example.     

Residual Kriging for Functional Spatial Prediction of Salinity Curves

Recently, several methodologies to perform geostatistical analysis of functional data have been proposed. All of them assume that the spatial functional process considered is stationary. However, in practice, we often have nonstationary functional data because there exists an explicit spatial trend in the mean. Here, we propose a methodology to extend kriging predictors for functional data to the case where the mean function is not constant through the region of interest. We consider an approach based on the classical residual kriging method used in univariate geostatistics. We propose a three steps procedure. Initially, a functional regression model is used to detrend the mean. Then we apply kriging methods for functional data to the regression residuals to predict a residual curve at a non-data location. Finally, the prediction curve is obtained as the sum of the trend and the residual prediction. We apply the methodology to salinity data corresponding to 21 salinity curves recorded at the Ciénaga Grande de Santa Marta estuary, located in the Caribbean coast of Colombia. A cross-validation analysis was carried out to track the performance of the proposed methodology.     

Two sample inference in functional linear models

We propose a method of comparing two functional linear models in which explanatory variables are functions (curves) and responses can be either scalars or functions. In such models, the role of parameter vectors (or matrices) is played by integral operators acting on a function space. We test the null hypothesis that these operators are the same in two independent samples. The complexity of the test statistics increases as we move from scalar to functional responses and relax assumptions on the covariance structure of the regressors. They all, however, have an asymptotic chi‐squared distribution with the number of degrees of freedom which depends on a specific setting. The test statistics are readily computable using the R package fda , and have good finite sample properties. The test is applied to egg‐laying curves of Mediterranean flies and to data from terrestrial magnetic observatories. The Canadian Journal of Statistics © 2009 Statistical Society of Canada     

Curve prediction and clustering with mixtures of Gaussian process functional regression models

Shi, Wang, Murray-Smith and Titterington (Biometrics 63:714–723, 2007) proposed a Gaussian process functional regression (GPFR) model to model functional response curves with a set of functional covariates. Two main problems are addressed by their method: modelling nonlinear and nonparametric regression relationship and modelling covariance structure and mean structure simultaneously. The method gives very good results for curve fitting and prediction but side-steps the problem of heterogeneity. In this paper we present a new method for modelling functional data with ‘spatially’ indexed data, i.e., the heterogeneity is dependent on factors such as region and individual patient’s information. For data collected from different sources, we assume that the data corresponding to each curve (or batch) follows a Gaussian process functional regression model as a lower-level model, and introduce an allocation model for the latent indicator variables as a higher-level model. This higher-level model is dependent on the information related to each batch. This method takes advantage of both GPFR and mixture models and therefore improves the accuracy of predictions. The mixture model has also been used for curve clustering, but focusing on the problem of clustering functional relationships between response curve and covariates, i.e. the clustering is based on the surface shape of the functional response against the set of functional covariates. The model is examined on simulated data and real data.     

Ordering and selecting components in multivariate or functional data linear prediction

Summary.  The problem of component choice in regression-based prediction has a long history. The main cases where important choices must be made are functional data analysis, and problems in which the explanatory variables are relatively high dimensional vectors. Indeed, principal component analysis has become the basis for methods for functional linear regression. In this context the number of components can also be interpreted as a smoothing parameter, and so the viewpoint is a little different from that for standard linear regression. However, arguments for and against conventional component choice methods are relevant to both settings and have received significant recent attention. We give a theoretical argument, which is applicable in a wide variety of settings, justifying the conventional approach. Although our result is of minimax type, it is not asymptotic in nature; it holds for each sample size. Motivated by the insight that is gained from this analysis, we give theoretical and numerical justification for cross-validation choice of the number of components that is used for prediction. In particular we show that cross-validation leads to asymptotic minimization of mean summed squared error, in settings which include functional data analysis.     

Functional approach of flexibly modelling generalized longitudinal data and survival time

We propose a flexible functional approach for modelling generalized longitudinal data and survival time using principal components. In the proposed model the longitudinal observations can be continuous or categorical data, such as Gaussian, binomial or Poisson outcomes. We generalize the traditional joint models that treat categorical data as continuous data by using some transformations, such as CD4 counts. The proposed model is data-adaptive, which does not require pre-specified functional forms for longitudinal trajectories and automatically detects characteristic patterns. The longitudinal trajectories observed with measurement error or random error are represented by flexible basis functions through a possibly nonlinear link function, combining dimension reduction techniques resulting from functional principal component (FPC) analysis. The relationship between the longitudinal process and event history is assessed using a Cox regression model. Although the proposed model inherits the flexibility of non-parametric methods, the estimation procedure based on the EM algorithm is still parametric in computation, and thus simple and easy to implement. The computation is simplified by dimension reduction for random coefficients or FPC scores. An iterative selection procedure based on Akaike information criterion (AIC) is proposed to choose the tuning parameters, such as the knots of spline basis and the number of FPCs, so that appropriate degree of smoothness and fluctuation can be addressed. The effectiveness of the proposed approach is illustrated through a simulation study, followed by an application to longitudinal CD4 counts and survival data which were collected in a recent clinical trial to compare the efficiency and safety of two antiretroviral drugs.     

Genetic Algorithm in the Wavelet Domain for Large p Small n Regression

Many areas of statistical modeling are plagued by the “curse of dimensionality,” in which there are more variables than observations. This is especially true when developing functional regression models where the independent dataset is some type of spectral decomposition, such as data from near-infrared spectroscopy. While we could develop a very complex model by simply taking enough samples (such that n > p), this could prove impossible or prohibitively expensive. In addition, a regression model developed like this could turn out to be highly inefficient, as spectral data usually exhibit high multicollinearity. In this article, we propose a two-part algorithm for selecting an effective and efficient functional regression model. Our algorithm begins by evaluating a subset of discrete wavelet transformations, allowing for variation in both wavelet and filter number. Next, we perform an intermediate processing step to remove variables with low correlation to the response data. Finally, we use the genetic algorithm to perform a stochastic search through the subset regression model space, driven by an information-theoretic objective function. We allow our algorithm to develop the regression model for each response variable independently, so as to optimally model each variable. We demonstrate our method on the familiar biscuit dough dataset, which has been used in a similar context by several researchers. Our results demonstrate both the flexibility and the power of our algorithm. For each response variable, a different subset model is selected, and different wavelet transformations are used. The models developed by our algorithm show an improvement, as measured by lower mean error, over results in the published literature.     

Measurement-Error Diagnostics and the Sex Discrimination Problem

Numerical and graphical diagnostic tools are presented for studying the effect of explanatory-variable measurement errors on regression results when very rough knowledge about the measurement-error variances or reliabilities is available. These methods are exhibited on an example of sex discrimination in which male and female salaries are compared after adjustment for individual qualifications but the observed qualification variables are only proxies for what is actually desired. A measurement-error trace is suggested, much like a ridge trace, to exhibit effects of measurement errors of various sizes on the estimate of the adjusted sex difference in log salaries. An approximate Bayesian analysis for the simple functional model is also presented.