Marginal Nested Interactions for Contingency Tables

We introduce a new definition of generalized marginal interactions, called marginal nested interactions, which includes baseline, local, continuation and reverse continuation logits and odds ratios as special cases. The significant aspect of this definition is the inclusion of new types of logits and odds ratios that can handle non-ordinal, ordinal and partially ordered categorical variables in a flexible and appropriate way. It is proved also that the marginal nested interactions define a saturated model of a multi-way contingency table.     

Maximum Likelihood Inference for Log-linear Models Subject to Constraints of Double Monotone Dependence

To model an hypothesis of double monotone dependence between two ordinal categorical variables A and B usually a set of symmetric odds ratios defined on the joint probability function is subject to linear inequality constraints. Conversely in this paper two sets of asymmetric odds ratios defined, respectively, on the conditional distributions of A given B and on the conditional distributions of B given A are subject to linear inequality constraints. If the joint probabilities are parameterized by a saturated log-linear model, these constraints are nonlinear inequality constraints on the log-linear parameters. The problem here considered is a non-standard one both for the presence of nonlinear inequality constraints and for the fact that the number of these constraints is greater than the number of the parameters of the saturated log-linear model.This work has been supported by the COFIN 2002 project, references 2002133957_002, 2002133957_004. Preliminary findings have been presented at SIS (Società Italiana di Statistica) Annual Meeting, Bari, 2004.     

Bayesian inference for categorical data analysis

This article surveys Bayesian methods for categorical data analysis, with primary emphasis on contingency table analysis. Early innovations were proposed by Good (1953, 1956, 1965) for smoothing proportions in contingency tables and by Lindley (1964) for inference about odds ratios. These approaches primarily used conjugate beta and Dirichlet priors. Altham (1969, 1971) presented Bayesian analogs of small-sample frequentist tests for 2 x 2 tables using such priors. An alternative approach using normal priors for logits received considerable attention in the 1970s by Leonard and others (e.g., Leonard 1972). Adopted usually in a hierarchical form, the logit-normal approach allows greater flexibility and scope for generalization. The 1970s also saw considerable interest in loglinear modeling. The advent of modern computational methods since the mid-1980s has led to a growing literature on fully Bayesian analyses with models for categorical data, with main emphasis on generalized linear models such as logistic regression for binary and multi-category response variables.     

A parametric approach for measuring the effect of the 10th revision of the international classification of diseases

Summary.  The World Health Organization revises the international classification of diseases about every 10 years to stay abreast of advances in medical science and to compare international health statistics. However, the new revision (i.e. the 10th revision) introduces discontinuities in mortality trends, making it impossible to compare the mortality statistics before and after the revision directly. The US National Center for Health Statistics published comparability ratios to correct the discontinuities between the two sets of mortality data: one coded by the ninth revision and the other by the 10th revision. We propose a parametric two-stage model to produce new comparability ratios and use these ratios to correct the discontinuities. The asymptotic behaviour of the comparability ratios is investigated. Our model not only measures the extent of discontinuities in trends in mortality but also can be used to forecast future mortality. Comparing with the National Center for Health Statistics's ratios, our comparability ratios smooth out the discontinuities better for most causes.     

Flexible modelling of neuron firing rates across different experimental conditions: an application to neural activity in the prefrontal cortex during a discrimination task

Summary.  In many electrophysiological experiments the main objectives include estimation of the firing rate of a single neuron, as well as a comparison of its temporal evolution across different experimental conditions. To accomplish these two goals, we propose a flexible approach based on the logistic generalized additive model including condition-by-time interactions. If an interaction of this type is detected in the model, we then establish that the use of the temporal odds ratio curves is very useful in discriminating between the conditions under which the firing probability is higher. Bootstrap techniques are used for testing for interactions and constructing pointwise confidence bands for the true odds ratio curves. Finally, we apply the new methodology to assessing relationships between neural response and decision-making in movement-selective neurons in the prefrontal cortex of behaving monkeys.     

Dynamic Bayesian analysis of generalized odds ratios assuming multivariate skew-normal distribution for the error terms in the system equation

In this paper, we develop a methodology for the dynamic Bayesian analysis of generalized odds ratios in contingency tables. It is a standard practice to assume a normal distribution for the random effects in the dynamic system equations. Nevertheless, the normality assumption may be unrealistic in some applications and hence the validity of inferences can be dubious. Therefore, we assume a multivariate skew-normal distribution for the error terms in the system equation at each step. Moreover, we introduce a moving average approach to elicit the hyperparameters. Both simulated data and real data are analyzed to illustrate the application of this methodology.     

Generalised quasi‐symmetry models for ordinal contingency tables

This paper extends the ordinary quasi‐symmetry (QS) model for square contingency tables with commensurable classification variables. The proposed generalised QS model is defined in terms of odds ratios that apply to ordinal variables. In particular, we present QS models based on global, cumulative and continuation odds ratios and discuss their properties. Finally, the conditional generalised QS model is introduced for local and global odds ratios. These models are illustrated through the analysis of two data sets.     

Repeated confidence intervals and prediction intervals using stochastic curtailment

Jennlson and Turnbull (1984,1989) proposed procedures for repeated confidence intervals for parameters of interest In a clinical trial monitored with group sequential methods. These methods are extended for use with stochastic curtailment procedures for two samples in the estimation of differences of means, differences of proportions, odds ratios, and hazard ratios. Methods are described for constructing 1) confidence intervals for these estimates at repeated times In the course of a trial, and 2) prediction intervals for predicted estimates at the end of a trial. Specific examples from several clinical trials are presented.     

Bayesian estimation of log odds ratios over two-way contingency tables with intraclass correlated cells

In this article, a Bayesian approach is proposed for the estimation of log odds ratios and intraclass correlations over a two-way contingency table, including intraclass correlated cells. Required likelihood functions of log odds ratios are obtained, and determination of prior structures is discussed. Hypothesis testing for log odds ratios and intraclass correlations by using the posterior simulations is outlined. Because the proposed approach includes no asymptotic theory, it is useful for the estimation and hypothesis testing of log odds ratios in the presence of certain intraclass correlation patterns. A family health status and limitations data set is analyzed by using the proposed approach in order to figure out the impact of intraclass correlations on the estimates and hypothesis tests of log odds ratios. Although intraclass correlations are small in the data set, we obtain that even small intraclass correlations can significantly affect the estimates and test results, and our approach is useful for the estimation and testing of log odds ratios in the presence of intraclass correlations.     

Using continuation-ratio logits to analyze the variation of the age composition of fish catches

Major sources of information for the estimation of the size of the fish stocks and the rate of their exploitation are samples from which the age composition of catches may be determined. However, the age composition in the catches often varies as a result of several factors. Stratification of the sampling is desirable, because it leads to better estimates of the age composition, and the corresponding variances and covariances. The analysis is impeded by the fact that the response is ordered categorical. This paper introduces an easily applicable method to analyze such data. The method combines continuation-ratio logits and the theory for generalized linear mixed models. Continuation-ratio logits are designed for ordered multinomial response and have the feature that the associated log-likelihood splits into separate terms for each category levels. Thus, generalized linear mixed models can be applied separately to each level of the logits. The method is illustrated by the analysis of age-composition data collected from the Danish sandeel fishery in the North Sea in 1993. The significance of possible sources of variation is evaluated, and formulae for estimating the proportions of each age group and their variance-covariance matrix are derived.     

Simultaneous Logit-Based Confidence Intervals for Odds Ratios in 2 × k Classification Tables with a Fixed Reference Level

In this article, we consider the problem of constructing simultaneous confidence intervals for odds ratios in 2 × k classification tables with a fixed reference level. We discuss six methods designed to control the familywise error rate and investigate these methods in terms of simultaneous coverage probability and mean interval length. We illustrate the importance and the implementation of these methods using two {\sc hiv} public health studies.     

The analysis of ratios and cross-product ratios of poisson variates with application to incidence rates

The incidence of most diseases is low enough that in. large populations the number of new cases may be considered a Poisson variate. This paper explores models and methods for analyzing such data Specific cases are the estimation and testing of ratios and the cross-product ratios, both simple and stratified* We assume the Poisson means are exponential functions of the relevant parameters. The resulting sets of sufficient statistics are partitioned into a test statistic and a vector of statistics related to the nuisance parameters . The methods derived are based on the conditional distribution of the test statistic given the other sufficient statistics. The analyses of stratified cross-product ratios are seen to be analogues of the noncentral distribution associated with theanalysis of the common odds ratio in several 2×2 tables. The various methods are illustrated in numerical examples involving incidence rates of cancer in two metropolitan areas adjusting for both age and sex.     

Cumulative or adjacent logits: Which choice for an ordinal logistic latent variable model?

With ordinal response items, a graded response model (GRM) is of cumulative logits type, while the polytomous Rasch model (PRM) is based on adjacent logits. In this work, we compare the two approaches. We show that the PRM is superior to the GRM, with interesting properties that we prove. Note S_ν the sum of item responses of individual ν and Θ_ν its latent parameter; we show i) S_ν is a sufficient statistic for θ_ν and ii) a property of “stochastic ordering” of the conditional distributions G_θ/S. The second property, less known, is, to our knowledge, nowhere satisfactorily demonstrated.     

Measuring and estimating the interaction between exposures on a dichotomous outcome for observational studies

In observational studies for the interaction between exposures on a dichotomous outcome of a certain population, usually one parameter of a regression model is used to describe the interaction, leading to one measure of the interaction. In this article we use the conditional risk of an outcome given exposures and covariates to describe the interaction and obtain five different measures of the interaction, that is, difference between the marginal risk differences, ratio of the marginal risk ratios, ratio of the marginal odds ratios, ratio of the conditional risk ratios, and ratio of the conditional odds ratios. These measures reflect different aspects of the interaction. By using only one regression model for the conditional risk, we obtain the maximum-likelihood (ML)-based point and interval estimates of these measures, which are most efficient due to the nature of ML. We use the ML estimates of the model parameters to obtain the ML estimates of these measures. We use the approximate normal distribution of the ML estimates of the model parameters to obtain approximate non-normal distributions of the ML estimates of these measures and then confidence intervals of these measures. The method can be easily implemented and is presented via a medical example.     

Approximating the distribution of a renewal process using generalized poisson distributions

The exact distribution of a renewal counting process is not easy to compute and is rarely of closed form. In this article, we approximate the distribution of a renewal process using families of generalized Poisson distributions. We first compute approximations to the first several moments of the renewal process. In some cases, a closed form approximation is obtained. It is found that each family considered has its own strengths and weaknesses. Some new families of generalized Poisson distributions are recommended. Theorems are obtained determining when these variance to mean ratios are less than (or exceed) one without having to find the mean and variance. Some numerical comparisons are also made.     

Estimation of odds ratios under order restrictions

A new method for estimating a set of odds ratios under an order restriction based on estimating equations is proposed. The method is applied to those of the conditional maximum likelihood estimators and the Mantel-Haenszel estimators. The estimators derived from the conditional likelihood estimating equations are shown to maximize the conditional likelihoods. It is also seen that the restricted estimators converge almost surely to the respective odds ratios when the respective sample sizes become large regularly. The restricted estimators are compared with the unrestricted maximum likelihood estimators by a Monte Carlo simulation. The simulation studies show that the restricted estimates improve the mean squared errors remarkably, while the Mantel-Haenszel type estimates are competitive with the conditional maximum likelihood estimates, being slightly worse.     

Cumulative logit models for matched pairs case-control design: Studies with covariates

Binary as well as polytomous logistic models have been found useful for estimating odds ratios when the exposure of prime interest assumes unordered multiple levels under matched pair case-control design. In our earlier studies, we have shown the use of a polytomous logistic model for estimating cumulative odds ratios when the exposure of prime interest assumes multiple ordered levels under matched pair case-control design. In this paper, using the above model, we estimate the covariate adjusted cumulative odds ratios, in the case of an ordinal multiple level exposure variable under a pairwise matched case-control retrospective design. An approach, based on asymptotic distributional results, is also described to investigate whether or not the response categories are distinguishable with respect to the cumulative odds ratios after adjusting the effect of covariates. An illustrative example is presented and discussed.     

Mantel-Haenszel estimators for irregular sparse K2×J tables

This paper deals with sparse K2×J(J>2)$K2\times J(J>2)$ tables. Projection-method Mantel–Haenszel (MH) estimators of the common odds ratios have been proposed for K2×J$K2\times J$ tables, which include Greenland's generalized MH estimator as a special case. The method projects log-transformed MH estimators for all K2×2$K2\times 2$ subtables, which were called naive MH estimators, onto a linear space spanned by log odds ratios. However, for sparse tables it is often the case that naive MH estimators are unable to be computed. In this paper we introduce alternative naive MH estimators using a graph that represents K2×J$K2\times J$ tables, and apply the projection to these alternative estimators. The idea leads to infinitely many reasonable estimators and we propose a method to choose the optimal one by solving a quadratic optimization problem induced by the graph, where some graph-theoretic arguments play important roles to simplify the optimization problem. An illustration is given using data from a case–control study. A simulation study is also conducted, which indicates that the MH estimator tends to have a smaller mean squared error than the MH estimator previously suggested and the conditional maximum likelihood estimator for sparse tables.     

On estmation of poisson lovits

Simultaneous estimation of poisson logits is considered in a 2xp contingency table under entropy loss. Classical estimators, which are corrected versions of the maximum likeihood estimators, are obtained as generalized Bayes and empirical Bayes estimators. Finally, improved estimators are obtained which domicate the generalized Bayes estimators.     

The magnitude of the difference of crude and adjusted log odds ratios

Crude and adjusted odds ratios, calculated from a collapsed 2×2 table or a stratified 2×2×K table, can be very similar or quite different when significant associations are found between each dichotomous variable and the K-level stratifying variable. It is demonstrated here that the magnitude of the difference between the logs of the two estimators can be approximated by 4 times the covariance between log linear interactions describing the associations of each of the binary variables with the stratifying variable. Two data examples illustrate the usefulness of the variability and covariability of the interactions in providing a statistical accounting for the magnitude of the difference between the logs of the crude and adjusted odds ratios. Other interpretations and applications of the variances and covariances of the log linear interactions are discussed.