Asymmetry models for square contingency tables: exact tests via algebraic statistics

Square contingency tables with the same row and column classification occur frequently in a wide range of statistical applications, e.g. whenever the members of a matched pair are classified on the same scale, which is usually ordinal. Such tables are analysed by choosing an appropriate loglinear model. We focus on the models of symmetry, triangular, diagonal and ordinal quasi symmetry. The fit of a specific model is tested by the chi-squared test or the likelihood-ratio test, where p-values are calculated from the asymptotic chi-square distribution of the test statistic or, if this seems unjustified, from the exact conditional distribution. Since the calculation of exact p-values is often not feasible, we propose alternatives based on algebraic statistics combined with MCMC methods.     

Asymptotic normality of two symmetry test statistics based on the L1-error

In this paper, we propose two new tests to test the symmetry of a distribution. These tests are built up on the asymptotic normality of the L₁-distance to the symmetry of the Kernel and histogram density estimates. A simulation study is carried out to evaluate performances of the kernel based test.     

A simple nonparametric test for bivariate symmetry about a line

Over the years many researchers have dealt with testing the hypotheses of symmetry in univariate and multivariate distributions in the parametric and nonparametric setup. In a multivariate setup, there are several formulations of symmetry, for example, symmetry about an axis, joint symmetry, marginal symmetry, radial symmetry, symmetry about a known point, spherical symmetry, and elliptical symmetry among others. In this paper, for the bivariate case, we formulate a concept of symmetry about a straight line passing through the origin in a plane and accordingly develop a simple nonparametric test for testing the hypothesis of symmetry about a straight line. The proposed test is based on a measure of deviance between observed counts of bivariate samples in suitably defined pairs of sets. The exact null distribution and non-null distribution, for specified classes of alternatives, of the test statistics are obtained. The null distribution is tabulated for sample size from n=5 up to n=30. The null mean, null variance and the asymptotic null distributions of the proposed test statistics are also obtained. The empirical power of the proposed test is evaluated by simulating samples from the suitable class of bivariate distributions. The empirical findings suggest that the test performs reasonably well against various classes of asymmetric bivariate distributions. Further, it is advocated that the basic idea developed in this work can be easily adopted to test the hypotheses of exchangeability of bivariate random variables and also bivariate symmetry about a given axis which have been considered by several authors in the past.     

Lower semiquadratic copulas with a given diagonal section

Inspired by the notion of lower semilinear copulas, we introduce a new class of copulas. These copulas, called lower semiquadratic copulas, are constructed by quadratic interpolation on segments connecting the diagonal of the unit square to the lower and left boundary of the unit square. Moreover, we unveil the necessary and sufficient conditions on a diagonal function and two auxiliary real functions u and v to obtain a copula that has this diagonal function as diagonal section. Under some mild assumptions, we characterize the smallest and the greatest lower semiquadratic copulas with a given diagonal section.     

Tests of symmetry with one-sided alternatives in three-way contingency tables

For a two-dimensional contingency table of probabilities, the concept of symmetry around the main diagonal is well defined. Statistical hypothesis test of symmetry versus positive bias have also been explored. For tables of higher (three or more) dimensions, however, different concepts of symmetry are available. In this study, we consider statistical inference procedures of symmetry in partial tables versus various biases in three-dimensional tables. We find the maximum likelihood estimates of the cell probabilities and the asymptotic distribution of the likelihood ratio test statistic in each case. Simulation studies are used to investigate the sizes and powers of the tests. The methodologies developed are applied on real data sets.     

Rank-based empirical likelihood inference on medians of k populations

We propose a nonparametric method, called rank-based empirical likelihood (REL), for making inferences on medians and cumulative distribution functions (CDFs) of k populations. The standard distribution-free approach to testing the equality of k medians requires that the k population distributions have the same shape. Our REL-ratio (RELR) test for this problem requires fewer assumptions and can effectively use the symmetry information when the distributions are symmetric. Furthermore, our RELR statistic does not require estimation of variance, and achieves asymptotic pivotalness implicitly. When the k populations have equal medians we show that the REL method produces valid inferences for the common median and CDFs of k populations. Simulation results show that the REL approach works remarkably well in finite samples. A real data example is used to illustrate the proposed REL method.     

Parametric and permutation testing for multivariate monotonic alternatives

We are firstly interested in testing the homogeneity of k mean vectors against two-sided restricted alternatives separately in multivariate normal distributions. This problem is a multivariate extension of Bartholomew (in Biometrica 46:328–335, 1959b) and an extension of Sasabuchi et al. (in Biometrica 70:465–472, 1983) and Kulatunga and Sasabuchi (in Mem. Fac. Sci., Kyushu Univ. Ser. A: Mathematica 38:151–161, 1984) to two-sided ordered hypotheses. We examine the problem of testing under two separate cases. One case is that covariance matrices are known, the other one is that covariance matrices are unknown but common. For the general case that covariance matrices are known the test statistic is obtained using the likelihood ratio method. When the known covariance matrices are common and diagonal, the null distribution of test statistic is derived and its critical values are computed at different significance levels. A Monte Carlo study is also presented to estimate the power of the test. A test statistic is proposed for the case when the common covariance matrices are unknown. Since it is difficult to compute the exact p-value for this problem of testing with the classical method when the covariance matrices are completely unknown, we first present a reformulation of the test statistic based on the orthogonal projections on the closed convex cones and then determine the upper bounds for its p-values. Also we provide a general nonparametric solution based on the permutation approach and nonparametric combination of dependent tests.     

Locally asymptotically optimal tests for AR(p) against diagonal bilinear dependence

The problem of testing linear AR(p1) against diagonal bilinear BL(p1, 0; p2, p2) dependence is considered. Emphasis is put on local asymptotic optimality and the nonspecification of innovation densities. The tests we are deriving are asymptotically valid under a large class of densities, and locally asymptotically most stringent at some selected density f. They rely on generalized versions of residual autocorrelations (the spectrum), and generalized versions of the so-called cubic autocorrelations (the bispectrum). Local powers are explicitly provided. The local power of the Gaussian Lagrange multipliers method follows as a particular case.     

An asymptotic test for separability of a spatial autoregressive model

In this paper an asymptotic test for the separability of the spatial AR(p ₁,1) model is presented by translating the spatial problem to a multiple time series problem. It is shown that the transformed problem reduces to testing whether or not the coefficient matrices of a certain VAR(p ₁) are diagonal.

Some simulation study results are also presented here to demonstrate the use of this test.     

On a nonparametric test for the mixed-model

Nonparametric tests for the null hypothesis of no treatment effect in the mixed-model experiment which involves n randomly chosen subjects who respond once to each of ρ distinct treatments have been developed by Koch and Sen (1968), These tests were based on the assumption of compound symmetry of the error vectors and on the weaker assumption of diagonal symmetry of the error vectors. This paper considers an alternative (permutationally) distribution-free test under this latter assumption. The new test follows the same type of distribution theory as those in Koch and Sen, but utilizes the inherent invariance structure in a more visable and direct way.     

A Simple Test For The Independence of Sets of Variables

A test for the mutual independence of subvectors of the p-dimensional random vector X , distributed as N( 0, S? ), is described. The test is based on the maximum likelihood estimates (MLEs) of the off-(block) diagonal elements of S?. It is shown that the resulting test statistic is much easier to compute than the likelihood ratio (LR) test statistic while retaining the same asymptotic power properties in view of the general properties of tests based on the MLEs (ML test) and the likelihood ratio (LR test).     

Logrank test for bivariate survival data

The logrank test procedure for testing bivariate symmetry against asymmetry in matched-pair data is proposed. The presented test statistic is based on Mantel-Haenszel type statistics evaluated at diagonal grid points on the plane obtained from distinct uncensored failure times. The asymptotic results of the proposed test are derived and an example is shown to illustrate the methodology.     

Robust estimation of the correlation matrix of longitudinal data

We propose a double-robust procedure for modeling the correlation matrix of a longitudinal dataset. It is based on an alternative Cholesky decomposition of the form Σ=DLL ^? D where D is a diagonal matrix proportional to the square roots of the diagonal entries of Σ and L is a unit lower-triangular matrix determining solely the correlation matrix. The first robustness is with respect to model misspecification for the innovation variances in D, and the second is robustness to outliers in the data. The latter is handled using heavy-tailed multivariate t-distributions with unknown degrees of freedom. We develop a Fisher scoring algorithm for computing the maximum likelihood estimator of the parameters when the nonredundant and unconstrained entries of (L,D) are modeled parsimoniously using covariates. We compare our results with those based on the modified Cholesky decomposition of the form LD ² L ^? using simulations and a real dataset.     

Orthogonal diagonal Latin squares with small subsquares

We prove that there exists a pair of orthogonal diagonal Latin squares of order v with missing subsquares of side n(ODLS(v, n)) if and only if v ⩾ 3n + 2 and v − n even, in the cases n ⩽ 6.     

Tests for Symmetry Based on the One-Sample Wilcoxon Signed Rank Statistic

ABSTRACT

The one-sample Wilcoxon signed rank test was originally designed to test for a specified median, under the assumption that the distribution is symmetric, but it can also serve as a test for symmetry if the median is known. In this article we derive the Wilcoxon statistic as the first component of Pearson's X ² statistic for independence in a particularly constructed contingency table. The second and third components are new test statistics for symmetry. In the second part of the article, the Wilcoxon test is extended so that symmetry around the median and symmetry in the tails can be examined seperately. A trimming proportion is used to split the observations in the tails from those around the median. We further extend the method so that no arbitrary choice for the trimming proportion has to be made. Finally, the new tests are compared to other tests for symmetry in a simulation study. It is concluded that our tests often have substantially greater powers than most other tests.     

Double linear diagonals-parameter symmetry and decomposition of double symmetry for square tables

For square contingency tables with ordered category, the present paper proposes the double linear diagonals-parameter symmetry (D-LDPS) model which implies the structure of both asymmetry with respect to the main diagonal and with respect to the reverse diagonal in the table. The D-LDPS model may be appropriate for a square ordinal table if it is reasonable to assume an underlying bivariate normal distribution with equal marginal variances. The present paper also gives the orthogonal decomposition of the double symmetry model into the D-LDPS model and the double marginal mean equality model. An example is given.     

Foldover Conference Designs for Screening Experiments

A conference matrix is a square matrix C with zeros on the diagonal and ±1s off the diagonal, such that C ^T C = CC ^T  = (n ? 1)I, where I is the identity matrix. Conference matrices are an important class of combinatorial designs due to their many applications in several fields of science, including statistical-experimental designs, telecommunications, elliptic geometry, and more. In this article, conference matrices and their full foldover design are combined together to obtain an alternative method for screening active factors in complicated problems. This method provides a model-independent estimate of the set of active factors and also gives a linearity test for the underlying model.     

A combined p-value test for multiple hypothesis testing

Tests that combine p-values, such as Fisher's product test, are popular to test the global null hypothesis H₀ that each of n component null hypotheses, H₁,…,H_n, is true versus the alternative that at least one of H₁,…,H_n is false, since they are more powerful than classical multiple tests such as the Bonferroni test and the Simes tests. Recent modifications of Fisher's product test, popular in the analysis of large scale genetic studies include the truncated product method (TPM) of Zaykin et al. (2002), the rank truncated product (RTP) test of Dudbridge and Koeleman (2003) and more recently, a permutation based test—the adaptive rank truncated product (ARTP) method of Yu et al. (2009). The TPM and RTP methods require users' specification of a truncation point. The ARTP method improves the performance of the RTP method by optimizing selection of the truncation point over a set of pre-specified candidate points. In this paper we extend the ARTP by proposing to use all the possible truncation points {1,…,n} as the candidate truncation points. Furthermore, we derive the theoretical probability distribution of the test statistic under the global null hypothesis H₀. Simulations are conducted to compare the performance of the proposed test with the Bonferroni test, the Simes test, the RTP test, and Fisher's product test. The simulation results show that the proposed test has higher power than the Bonferroni test and the Simes test, as well as the RTP method. It is also significantly more powerful than Fisher's product test when the number of truly false hypotheses is small relative to the total number of hypotheses, and has comparable power to Fisher's product test otherwise.