Multivariate Poisson hidden Markov models with a case study of modelling seismicity

While the literature on multivariate models for continuous data flourishes, there is a lack of models for multivariate counts. We aim to contribute to this framework by extending the well known class of univariate hidden Markov models to the multidimensional case, by introducing multivariate Poisson hidden Markov models. Each state of the extended model is associated with a different multivariate discrete distribution. We consider different distributions with Poisson marginals, starting from the multivariate Poisson distribution and then extending to copula based distributions to allow flexible dependence structures. An EM type algorithm is developed for maximum likelihood estimation. A real data application is presented to illustrate the usefulness of the proposed models. In particular, we apply the models to the occurrence of strong earthquakes (surface wave magnitude ≥5), in three seismogenic subregions in the broad region of the North Aegean Sea for the time period from 1 January 1981 to 31 December 2008. Earthquakes occurring in one subregion may trigger events in adjacent ones and hence the observed time series of events are cross‐correlated. It is evident from the results that the three subregions interact with each other at times differing by up to a few months. This migration of seismic activity is captured by the model as a transition to a state of higher seismicity.     

Multivariate Poisson regression with covariance structure

In recent years the applications of multivariate Poisson models have increased, mainly because of the gradual increase in computer performance. The multivariate Poisson model used in practice is based on a common covariance term for all the pairs of variables. This is rather restrictive and does not allow for modelling the covariance structure of the data in a flexible way. In this paper we propose inference for a multivariate Poisson model with larger structure, i.e. different covariance for each pair of variables. Maximum likelihood estimation, as well as Bayesian estimation methods are proposed. Both are based on a data augmentation scheme that reflects the multivariate reduction derivation of the joint probability function. In order to enlarge the applicability of the model we allow for covariates in the specification of both the mean and the covariance parameters. Extension to models with complete structure with many multi-way covariance terms is discussed. The method is demonstrated by analyzing a real life data set.     

Doubly inflated Poisson model using Gaussian copula

Multivariate data are present in many research areas. Its analysis is challenging when assumptions of normality are violated and the data are discrete. The Poisson discrete data can be thought of as very common discrete type, but the inflated and the doubly inflated correspondence are gaining popularity (Sengupta, Chaganty, and Sabo 2015; Lee, Jung, and Jin 2009; Agarwal, Gelfand, and Citron-Pousty 2002).

Our aim is to build a statistical model that can be tractable and used to estimate the model parameters for the multivariate doubly inflated Poisson. To keep the correlation structure, we incorporate ideas from the copula distributions. A multivariate doubly inflated Poisson distribution using Gaussian copula is introduced. Data simulation and parameter estimation algorithms are also provided. Residual checks are carried out to assess any substantial biases. The model dimensionality has been increased to test the performance of the provided estimation method. All results show high-efficiency and promising outcomes in the modeling of discrete data and particularly the doubly inflated Poisson count type data, under a novel modified algorithm.     

Regression for doubly inflated multivariate Poisson distributions

Dependent multivariate count data occur in several research studies. These data can be modelled by a multivariate Poisson or Negative binomial distribution constructed using copulas. However, when some of the counts are inflated, that is, the number of observations in some cells are much larger than other cells, then the copula-based multivariate Poisson (or Negative binomial) distribution may not fit well and it is not an appropriate statistical model for the data. There is a need to modify or adjust the multivariate distribution to account for the inflated frequencies. In this article, we consider the situation where the frequencies of two cells are higher compared to the other cells and develop a doubly inflated multivariate Poisson distribution function using multivariate Gaussian copula. We also discuss procedures for regression on covariates for the doubly inflated multivariate count data. For illustrating the proposed methodologies, we present real data containing bivariate count observations with inflations in two cells. Several models and linear predictors with log link functions are considered, and we discuss maximum likelihood estimation to estimate unknown parameters of the models.     

Finite mixtures of multivariate Poisson distributions with application

In the present paper we examine finite mixtures of multivariate Poisson distributions as an alternative class of models for multivariate count data. The proposed models allow for both overdispersion in the marginal distributions and negative correlation, while they are computationally tractable using standard ideas from finite mixture modelling. An EM type algorithm for maximum likelihood (ML) estimation of the parameters is developed. The identifiability of this class of mixtures is proved. Properties of ML estimators are derived. A real data application concerning model based clustering for multivariate count data related to different types of crime is presented to illustrate the practical potential of the proposed class of models.     

General mixed Poisson regression models with varying dispersion

A general class of mixed Poisson regression models is introduced. This class is based on a mixing between the Poisson distribution and a distribution belonging to the exponential family. With this, we unified some overdispersed models which have been studied separately, such as negative binomial and Poisson inverse gaussian models. We consider a regression structure for both the mean and dispersion parameters of the mixed Poisson models, thus extending, and in some cases correcting, some previous models considered in the literature. An expectation–maximization (EM) algorithm is proposed for estimation of the parameters and some diagnostic measures, based on the EM algorithm, are considered. We also obtain an explicit expression for the observed information matrix. An empirical illustration is presented in order to show the performance of our class of mixed Poisson models. This paper contains a Supplementary Material.     

Bayesian multivariate Poisson mixtures with an unknown number of components

In this paper we present Bayesian analysis of finite mixtures of multivariate Poisson distributions with an unknown number of components. The multivariate Poisson distribution can be regarded as the discrete counterpart of the multivariate normal distribution, which is suitable for modelling multivariate count data. Mixtures of multivariate Poisson distributions allow for overdispersion and for negative correlations between variables. To perform Bayesian analysis of these models we adopt a reversible jump Markov chain Monte Carlo (MCMC) algorithm with birth and death moves for updating the number of components. We present results obtained from applying our modelling approach to simulated and real data. Furthermore, we apply our approach to a problem in multivariate disease mapping, namely joint modelling of diseases with correlated counts.     

Parameter estimation under orthant restrictions

The authors consider the estimation of linear functions of a multivariate parameter under orthant restrictions. These restrictions are considered both for location models and for the Poisson distribution. For these models, situations are characterized for which the restricted maximum likelihood estimator dominates the unrestricted one for the estimation of any linear function of the parameter. The results obtained point directly to the importance of the dimension of the parameter space, the central direction of the cone and its vertex in these cases. Special attention is given to examples, such as the one‐way analysis of variance, where the estimation of individual interesting linear functions of the parameter, as the coordinates and the differences between them, is also treated.     

Exact Bayesian modeling for bivariate Poisson data and extensions

Bivariate count data arise in several different disciplines (epidemiology, marketing, sports statistics just to name a few) and the bivariate Poisson distribution being a generalization of the Poisson distribution plays an important role in modelling such data. In the present paper we present a Bayesian estimation approach for the parameters of the bivariate Poisson model and provide the posterior distributions in closed forms. It is shown that the joint posterior distributions are finite mixtures of conditionally independent gamma distributions for which their full form can be easily deduced by a recursively updating scheme. Thus, the need of applying computationally demanding MCMC schemes for Bayesian inference in such models will be removed, since direct sampling from the posterior will become available, even in cases where the posterior distribution of functions of the parameters is not available in closed form. In addition, we define a class of prior distributions that possess an interesting conjugacy property which extends the typical notion of conjugacy, in the sense that both prior and posteriors belong to the same family of finite mixture models but with different number of components. Extension to certain other models including multivariate models or models with other marginal distributions are discussed.     

Likelihood-based and Bayesian methods for Tweedie compound Poisson linear mixed models

The Tweedie compound Poisson distribution is a subclass of the exponential dispersion family with a power variance function, in which the value of the power index lies in the interval (1,2). It is well known that the Tweedie compound Poisson density function is not analytically tractable, and numerical procedures that allow the density to be accurately and fast evaluated did not appear until fairly recently. Unsurprisingly, there has been little statistical literature devoted to full maximum likelihood inference for Tweedie compound Poisson mixed models. To date, the focus has been on estimation methods in the quasi-likelihood framework. Further, Tweedie compound Poisson mixed models involve an unknown variance function, which has a significant impact on hypothesis tests and predictive uncertainty measures. The estimation of the unknown variance function is thus of independent interest in many applications. However, quasi-likelihood-based methods are not well suited to this task. This paper presents several likelihood-based inferential methods for the Tweedie compound Poisson mixed model that enable estimation of the variance function from the data. These algorithms include the likelihood approximation method, in which both the integral over the random effects and the compound Poisson density function are evaluated numerically; and the latent variable approach, in which maximum likelihood estimation is carried out via the Monte Carlo EM algorithm, without the need for approximating the density function. In addition, we derive the corresponding Markov Chain Monte Carlo algorithm for a Bayesian formulation of the mixed model. We demonstrate the use of the various methods through a numerical example, and conduct an array of simulation studies to evaluate the statistical properties of the proposed estimators.     

A robust multivariate Birnbaum–Saunders distribution: EM estimation

We propose here a robust multivariate extension of the bivariate Birnbaum–Saunders (BS) distribution derived by Kundu et al. [Bivariate Birnbaum–Saunders distribution and associated inference. J Multivariate Anal. 2010;101:113–125], based on scale mixtures of normal (SMN) distributions that are used for modelling symmetric data. This resulting multivariate BS-type distribution is an absolutely continuous distribution whose marginal and conditional distributions are of BS-type distribution of Balakrishnan et al. [Estimation in the Birnbaum–Saunders distribution based on scalemixture of normals and the EM algorithm. Stat Oper Res Trans. 2009;33:171–192]. Due to the complexity of the likelihood function, parameter estimation by direct maximization is very difficult to achieve. For this reason, we exploit the nice hierarchical representation of the proposed distribution to propose a fast and accurate EM algorithm for computing the maximum likelihood (ML) estimates of the model parameters. We then evaluate the finite-sample performance of the developed EM algorithm and the asymptotic properties of the ML estimates through empirical experiments. Finally, we illustrate the obtained results with a real data and display the robustness feature of the estimation procedure developed here.     

The multivariate component zero-inflated Poisson model for correlated count data analysis

Multivariate zero-inflated Poisson (ZIP) distributions are important tools for modelling and analysing correlated count data with extra zeros. Unfortunately, existing multivariate ZIP distributions consider only the overall zero-inflation while the component zero-inflation is not well addressed. This paper proposes a flexible multivariate ZIP distribution, called the multivariate component ZIP distribution, in which both the overall and component zero-inflations are taken into account. Likelihood-based inference procedures including the calculation of maximum likelihood estimates of parameters in the model without and with covariates are provided. Simulation studies indicate that the performance of the proposed methods on the multivariate component ZIP model is satisfactory. The Australia health care utilisation data set is analysed to demonstrate that the new distribution is more appropriate than the existing multivariate ZIP distributions.     

Ml estimation in the poisson binomial distribution with grouped data via the em algorithm

The maximum likelihood estimation of parameters of the Poisson binomial distribution, based on a sample with exact and grouped observations, is considered by applying the EM algorithm (Dempster et al, 1977). The results of Louis (1982) are used in obtaining the observed information matrix and accelerating the convergence of the EM algorithm substantially. The maximum likelihood estimation from samples consisting entirely of complete (Sprott, 1958) or grouped observations are treated as special cases of the estimation problem mentioned above. A brief account is given for the implementation of the EM algorithm when the sampling distribution is the Neyman Type A since the latter is a limiting form of the Poisson binomial. Numerical examples based on real data are included.     

Pairwise likelihood estimation for multivariate mixed Poisson models generated by Gamma intensities

Estimating the parameters of multivariate mixed Poisson models is an important problem in image processing applications, especially for active imaging or astronomy. The classical maximum likelihood approach cannot be used for these models since the corresponding masses cannot be expressed in a simple closed form. This paper studies a maximum pairwise likelihood approach to estimate the parameters of multivariate mixed Poisson models when the mixing distribution is a multivariate Gamma distribution. The consistency and asymptotic normality of this estimator are derived. Simulations conducted on synthetic data illustrate these results and show that the proposed estimator outperforms classical estimators based on the method of moments. An application to change detection in low-flux images is also investigated.     

Nonparametric Bayesian inference for multivariate density functions using Feller priors

Multivariate density estimation plays an important role in investigating the mechanism of high-dimensional data. This article describes a nonparametric Bayesian approach to the estimation of multivariate densities. A general procedure is proposed for constructing Feller priors for multivariate densities and their theoretical properties as nonparametric priors are established. A blocked Gibbs sampling algorithm is devised to sample from the posterior of the multivariate density. A simulation study is conducted to evaluate the performance of the procedure.     

Modelling asymmetric volatility dynamics by multivariate BL-GARCH models

The class of Multivariate BiLinear GARCH (MBL-GARCH) models is proposed and its statistical properties are investigated. The model can be regarded as a generalization to a multivariate setting of the univariate BL-GARCH model proposed by Storti and Vitale (Stat Methods Appl 12:19–40, 2003a; Comput Stat 18:387–400, 2003b). It is shown how MBL-GARCH models allow to account for asymmetric effects in both conditional variances and correlations. An EM algorithm for the maximum likelihood estimation of the model parameters is derived. Furthermore, in order to test for the appropriateness of the conditional variance and covariance specifications, a set of robust conditional moments test statistics are defined. Finally, the effectiveness of MBL-GARCH models in a risk management setting is assessed by means of an application to the estimation of the optimal hedge ratio in futures hedging.     

三个多元正态总体在简单半序约束下均值估计

 多元保序回归理论对统计学中研究多维参数在序约束下的估计理论起着关键性作用。本文讨论了当协方差矩阵已知,在简单半序约束下,对三个多元正态总体均值的估计问题,给出了估计的算法。并证明了在多元均方损失条件下,给出的均值估计优于无序约束的均值估计。     

On a class of bivariate mixed Sarmanov distributions

Multivariate distributions are more and more used to model the dependence encountered in many fields. However, classical multivariate distributions can be restrictive by their nature, while Sarmanov's multivariate distribution, by joining different marginals in a flexible and tractable dependence structure, often provides a valuable alternative. In this paper, we introduce some bivariate mixed Sarmanov distributions with the purpose to extend the class of bivariate Sarmanov distributions and to obtain new dependency structures. Special attention is paid to the bivariate mixed Sarmanov distribution with Poisson marginals and, in particular, to the resulting bivariate Sarmanov distributions with negative binomial and with Poisson‐inverse Gaussian marginals; these particular types of mixed distributions have possible applications in, for example modelling bivariate count data. The extension to higher dimensions is also discussed. Moreover, concerning the dependency structure, we also present some correlation formulas.     

Dependence Estimation for Marginal Models of Multivariate Survival Data

We have previously(Segal and Neuhaus, 1993) devised methods for obtaining marginal regression coefficients and associated variance estimates for multivariate survival data, using a synthesis of the Poisson regression formulation for univariate censored survival analysis and generalized estimating equations (GEE's). The method is parametric in that a baseline survival distribution is specified. Analogous semiparametric models, with unspecified baseline survival, have also been developed (Wei, Lin and Weissfeld, 1989; Lin, 1994).Common to both these approaches is the provision of robust variances for the regression parameters. However, none of this work has addressed the more difficult area of dependence estimation. While GEE approaches ostensibly provide such estimates, we show that there are problems adopting these with multivariate survival data. Further, we demonstrate that these problems can affect estimation of the regression coefficients themselves. An alternate, ad hoc approach to dependence estimation, based on design effects, is proposed and evaluated via simulation and illustrative examples. This revised version was published online in July 2006 with corrections to the Cover Date.     

Multivariate mixtures of Erlangs for density estimation under censoring

Multivariate mixtures of Erlang distributions form a versatile, yet analytically tractable, class of distributions making them suitable for multivariate density estimation. We present a flexible and effective fitting procedure for multivariate mixtures of Erlangs, which iteratively uses the EM algorithm, by introducing a computationally efficient initialization and adjustment strategy for the shape parameter vectors. We furthermore extend the EM algorithm for multivariate mixtures of Erlangs to be able to deal with randomly censored and fixed truncated data. The effectiveness of the proposed algorithm is demonstrated on simulated as well as real data sets.