NON‐PARAMETRIC BAYESIAN INFERENCE FOR INHOMOGENEOUS MARKOV POINT PROCESSES

With reference to a specific dataset, we consider how to perform a flexible non‐parametric Bayesian analysis of an inhomogeneous point pattern modelled by a Markov point process, with a location‐dependent first‐order term and pairwise interaction only. A priori we assume that the first‐order term is a shot noise process, and that the interaction function for a pair of points depends only on the distance between the two points and is a piecewise linear function modelled by a marked Poisson process. Simulation of the resulting posterior distribution using a Metropolis–Hastings algorithm in the ‘conventional’ way involves evaluating ratios of unknown normalizing constants. We avoid this problem by applying a recently introduced auxiliary variable technique. In the present setting, the auxiliary variable used is an example of a partially ordered Markov point process model.     

State estimation for aoristic models

Aoristic data can be described by a marked point process in time in which the points cannot be observed directly but are known to lie in observable intervals, the marks. We consider Bayesian state estimation for the latent points when the marks are modeled in terms of an alternating renewal process in equilibrium and the prior is a Markov point process. We derive the posterior distribution, estimate its parameters and present some examples that illustrate the influence of the prior distribution. The model is then used to estimate times of occurrence of interval censored crimes.     

Modelling columnarity of pyramidal cells in the human cerebral cortex

For modelling the location of pyramidal cells in the human cerebral cortex, we suggest a hierarchical point process in that exhibits anisotropy in the form of cylinders extending along the z-axis. The model consists first of a generalised shot noise Cox process for the xy-coordinates, providing cylindrical clusters, and next of a Markov random field model for the z-coordinates conditioned on the xy-coordinates, providing either repulsion, aggregation or both within specified areas of interaction. Several cases of these hierarchical point processes are fitted to two pyramidal cell data sets, and of these a final model allowing for both repulsion and attraction between the points seem adequate. We discuss how the final model relates to the so-called minicolumn hypothesis in neuroscience.     

What is the effective sample size of a spatial point process?

Point process models are a natural approach for modelling data that arise as point events. In the case of Poisson counts, these may be fitted easily as a weighted Poisson regression. Point processes lack the notion of sample size. This is problematic for model selection, because various classical criteria such as the Bayesian information criterion (BIC) are a function of the sample size, n, and are derived in an asymptotic framework where n tends to infinity. In this paper, we develop an asymptotic result for Poisson point process models in which the observed number of point events, m, plays the role that sample size does in the classical regression context. Following from this result, we derive a version of BIC for point process models, and when fitted via penalised likelihood, conditions for the LASSO penalty that ensure consistency in estimation and the oracle property. We discuss challenges extending these results to the wider class of Gibbs models, of which the Poisson point process model is a special case.     

A Monte Carlo method for filtering a marked doubly stochastic Poisson process

The author provides an approximated solution for the filtering of a state-space model, where the hidden state process is a continuous-time pure jump Markov process and the observations come from marked point processes. Each state k corresponds to a different marked point process, defined by its conditional intensity function λ _k (t). When a state is visited by the hidden process, the corresponding marked point process is observed. The filtering equations are obtained by applying the innovation method and the integral representation theorem of a point process martingale. Since the filtering equations belong to the family of Kushner–Stratonovich equations, an iterative solution is calculated. The theoretical solution is approximated and a Monte Carlo integration technique employed to implement it. The sequential method has been tested on a simulated data set based on marked point processes widely used in the statistical analysis of seismic sequences: the Poisson model, the stress release model and the Etas model.     

The Multi-scale Marked Area-interaction Point Process: A Model for the Spatial Pattern of Trees

Abstract.  The spatial pattern of trees in forests often combines different types of structure (regularity, clustering or randomness) at different scales. Taking species or size into account leads to marked patterns. The question addressed is to model such multi-scale marked patterns using a single process. Within the category of Markov processes, the area-interaction process has the advantage of being locally stable, whether it is attractive or repulsive. This process was originally defined as a one-scale non-marked process. We propose an extension as a multi-scale marked process. Three examples are presented to show the adequacy of this process to model tree patterns: 1. A pine pattern showing anisotropic regularity and clustering at different scales. 2. A bivariate (adult/juvenile) kimboto pattern in French Guiana, showing regularity for one type, clustering for the other and repulsion between the two. 3. A marked pattern in Gabon where the mark is tree diameter.     

Real-time reliability evaluation of two-phase Wiener degradation process

Reliability modeling and evaluation for the two-phase Wiener degradation process are studied. For many devices, the degradation rates could possibly increase or decrease in a non smooth manner at some point in time due to the change of degradation mechanism. A two-phase Wiener degradation process with an unobserved change point is used to model the degradation process. And we assume that the change point varies randomly from device to device. Furthermore, we integrate historical data and up-to-date observation data to improve the degradation modeling and evaluation based on Bayesian method. The change point between the two phases was obtained based on the Akaike information criterion (AIC) and the criterion of the residual sum of squares. Finally, a real example of liquid coupling devices (LCDs) and a numeric example are discussed to demonstrate the effectiveness of the proposed method. The results show that the proposed method is effective and efficient.     

Infill asymptotics for adaptive kernel estimators of spatial intensity

We apply the Abramson principle to define adaptive kernel estimators for the intensity function of a spatial point process. We derive asymptotic expansions for the bias and variance under the regime that n independent copies of a simple point process in Euclidean space are superposed. The method is illustrated by means of a simple example and applied to tornado data.     

A hierarchical point process with application to storm cell modelling

In environmetrics, interest often centres around the development of models and methods for making inference on observed point patterns assumed to be generated by latent spatial or spatio‐temporal processes, which may have a hierarchical structure. In this research, motivated by the analysis of spatio‐temporal storm cell data, we generalize the Neyman–Scott parent–child process to account for hierarchical clustering. This is accomplished by allowing the parents to follow a log‐Gaussian Cox process thereby incorporating correlation and facilitating inference at all levels of the hierarchy. This approach is applied to monthly storm cell data from the Bismarck, North Dakota radar station from April through August 2003 and we compare these results to simpler cluster processes to demonstrate the advantages of accounting for both levels of correlation present in these hierarchically clustered point patterns. The Canadian Journal of Statistics 47: 46–64; 2019 © 2019 Statistical Society of Canada     

Bayesian inference for non-Gaussian Ornstein–Uhlenbeck stochastic volatility processes

Summary.  We develop Markov chain Monte Carlo methodology for Bayesian inference for non-Gaussian Ornstein–Uhlenbeck stochastic volatility processes. The approach introduced involves expressing the unobserved stochastic volatility process in terms of a suitable marked Poisson process. We introduce two specific classes of Metropolis–Hastings algorithms which correspond to different ways of jointly parameterizing the marked point process and the model parameters. The performance of the methods is investigated for different types of simulated data. The approach is extended to consider the case where the volatility process is expressed as a superposition of Ornstein–Uhlenbeck processes. We apply our methodology to the US dollar–Deutschmark exchange rate.     

A J‐function for Inhomogeneous Spatio‐temporal Point Processes

We propose a new summary statistic for inhomogeneous intensity‐reweighted moment stationarity spatio‐temporal point processes. The statistic is defined in terms of the n‐point correlation functions of the point process, and it generalizes the J‐function when stationarity is assumed. We show that our statistic can be represented in terms of the generating functional and that it is related to the spatio‐temporal K‐function. We further discuss its explicit form under some specific model assumptions and derive ratio‐unbiased estimators. We finally illustrate the use of our statistic in practice. © 2014 Board of the Foundation of the Scandinavian Journal of Statistics     

A Sequential Point Process Model and Bayesian Inference for Spatial Point Patterns with Linear Structures

Abstract. We introduce a flexible spatial point process model for spatial point patterns exhibiting linear structures, without incorporating a latent line process. The model is given by an underlying sequential point process model. Under this model, the points can be of one of three types: a ‘background point’ an ‘independent cluster point’ or a ‘dependent cluster point’. The background and independent cluster points are thought to exhibit ‘complete spatial randomness’, whereas the dependent cluster points are likely to occur close to previous cluster points. We demonstrate the flexibility of the model for producing point patterns with linear structures and propose to use the model as the likelihood in a Bayesian setting when analysing a spatial point pattern exhibiting linear structures. We illustrate this methodology by analysing two spatial point pattern datasets (locations of bronze age graves in Denmark and locations of mountain tops in Spain).     

Structured Spatio-Temporal Shot-Noise Cox Point Process Models, with a View to Modelling Forest Fires

Abstract.  Spatio-temporal Cox point process models with a multiplicative structure for the driving random intensity, incorporating covariate information into temporal and spatial components, and with a residual term modelled by a shot-noise process, are considered. Such models are flexible and tractable for statistical analysis, using spatio-temporal versions of intensity and inhomogeneous K -functions, quick estimation procedures based on composite likelihoods and minimum contrast estimation, and easy simulation techniques. These advantages are demonstrated in connection with the analysis of a relatively large data set consisting of 2796 days and 5834 spatial locations of fires. The model is compared with a spatio-temporal log-Gaussian Cox point process model, and likelihood-based methods are discussed to some extent.     

Leverage and Influence Diagnostics for Spatial Point Processes

Abstract. For a spatial point process model fitted to spatial point pattern data, we develop diagnostics for model validation, analogous to the classical measures of leverage and influence in a generalized linear model. The diagnostics can be characterized as derivatives of basic functionals of the model. They can also be derived heuristically (and computed in practice) as the limits of classical diagnostics under increasingly fine discretizations of the spatial domain. We apply the diagnostics to two example datasets where there are concerns about model validity.     

Conditional intensity: A powerful tool for modelling and analysing point process data

The conditional intensity function of a spatial point process describes how the probability that a point of the process occurs ‘at’ a particular point in its carrier space depends on the realisation of the process in the remainder of the carrier space. Provided that the point process is simple, the conditional intensity determines all of the properties of the process, in particular its likelihood function. In this paper, we review the use of the conditional intensity function in the formulation of point process models and in making inferences from point process data, giving separate consideration to temporal, spatial and spatiotemporal settings. We argue that the conditional intensity function should take centre-stage in spatiotemporal point process modelling and analysis.     

Perfect Simulation for Length-interacting Polygonal Markov Fields in the Plane

Abstract.  The purpose of this paper was to construct perfect samplers for length-interacting Arak–Clifford–Surgailis polygonal Markov fields in the plane with nodes of order 2 ( V -shaped nodes). This is achieved by providing for the polygonal fields a hard core marked point process representation with individual points carrying polygonal loops as their marks, so that the coupling from the past and clan of ancestors routines can be adopted.     

A method for approximate fully bayesian analysis of parameters

Stochastic modeling of the geology in petroleum reservoirs has become an important tool in order to investigate flow properties in the reservoir. The stochastic models used contain parameters which must be estimated based on observations and geological knowledge. The amount of data available is however quite limited due to high drilling costs etc., and the lack of data prevents the use of many of the standard data driven approaches to the parameter estimation problem. Modern simulation based methods using Markov chain Monte Carlo simulation, can however be used to do fully Bayesian analysis with respect to parameters in the reservoir model, with the drawback of relatively high computational costs. In this paper, we propose a simple, relatively fast approximate method for fully Bayesian analysis of the parameters. We illustrate the method on both simulated and real data using a two-dimensional marked point model for reservoir characterization.     

A marked point process perspective in fitting spatial point process models

This paper discusses a new perspective in fitting spatial point process models. Specifically the spatial point process of interest is treated as a marked point process where at each observed event x$\mathbf{x}$ a stochastic process M(x;t)$M(\mathbf{x};t)$, 0<t<r$0<t<r$, is defined. Each mark process M(x;t)$M(\mathbf{x};t)$ is compared with its expected value, say F(t;θ)$F(t;\theta )$, to produce a discrepancy measure at x$\mathbf{x}$, where θ$\theta$ is a set of unknown parameters. All individual discrepancy measures are combined to define an overall measure which will then be minimized to estimate the unknown parameters. The proposed approach can be easily applied to data with sample size commonly encountered in practice. Simulations and an application to a real data example demonstrate the efficacy of the proposed approach.