Considering the Concordant Observations in Likelihood Ratio Test for Paired Binary Data

In the formula of the likelihood ratio test on fourfold tables with matched pairs of binary data, only the two parts b and c, which represent changes, are considered; the retained parts a and d, which represent concordant observations, are not included. To develop the test by considering all the four parts and the mixture distribution of likelihood ratio chi-squares, a formula based on the entire sample is proposed. The revised formula is the same as the unrevised one when a + d is zero. The revised test is more valid than the revised McNemar's test in most cases.     

Inference of Genetic Networks from Time Course Expression Data Using Functional Regression with Lasso Penalty

Statistical inference of genetic regulatory networks is essential for understanding temporal interactions of regulatory elements inside the cells. In this work, we propose to infer the parameters of the ordinary differential equations using the techniques from functional data analysis (FDA) by regarding the observed time course expression data as continuous-time curves. For networks with a large number of genes, we take advantage of the sparsity of the networks by penalizing the linear coefficients with a L ₁ norm. The ability of the algorithm to infer network structure is demonstrated using the cell-cycle time course data for Saccharomyces cerevisiae.     

A Numerical Method for Estimating the Variance of Age at Maximum Growth Rate in Growth Models

Studies on maturation and body composition mention age at peak height velocity (PHV) as an important measure that could predict adulthood outcome. The age at PHV is often derived from growth models such as the triple logistic fitted to the stature (height) data. Theoretically, for a well-behaved growth function, age at PHV could be obtained by setting the second derivative of the growth function to zero and solving for age. Such a solution obviously depends on the parameters of the growth function. Therefore, the uncertainty in the estimation of age at PHV resulting from the uncertainty in the estimation of the growth model, need to be accounted for in the models in which it is used as a predictor. Explicit expressions for the age at PHV and, consequently the variance of the estimate of the age at PHV, do not exist for some of the commonly used nonlinear growth functions, such as the triple logistic function. Once an estimate of this variance is obtained, it could be incorporated in subsequent modeling either through measurement error models or by using the inverse variances as weights. A numerical method for estimating the variance is implemented. The accuracy of this method is demonstrated through comparisons in models where explicit solution for the variance exists. The method of estimating the variance is illustrated by applying to growth data from the Fels study and subsequently used as weights in modeling two adulthood outcomes from the same study.     

Semiparametric Regression Analysis of Panel Count Data with Time-Dependent Covariates and Informative Observation and Censoring Times

In this article, we extend the joint frailty models proposed by Zhao and Tong (2011 Zhao , X. , Tong , X. ( 2011 ). Semiparametric regression analysis of panel count data with informative observation times . Comput. Statist. Data. Anal. 55 : 291 – 300 .[Crossref], [Web of Science ®] , [Google Scholar]) to panel count data with the time-dependent covariates and informative observation and censoring times. A novel estimating equation approach that does not depend on the distribution of frailty variables and the link function is proposed for estimation of parameters, and the asymptotic properties of the proposed estimators are established. Simulation studies demonstrate that the proposed inference procedure performs well. The analysis of a bladder tumor data is presented to illustrate the method.     

Nonparametric Predictive Inference for Ordinal Data

Nonparametric predictive inference (NPI) is a powerful frequentist statistical framework based only on an exchangeability assumption for future and past observations, made possible by the use of lower and upper probabilities. In this article, NPI is presented for ordinal data, which are categorical data with an ordering of the categories. The method uses a latent variable representation of the observations and categories on the real line. Lower and upper probabilities for events involving the next observation are presented, and briefly compared to NPI for non ordered categorical data. As application, the comparison of multiple groups of ordinal data is presented.     

The Poisson Generalized Linear Failure Rate Model

We formulate a new cure rate survival model by assuming that the number of competing causes of the event of interest has the Poisson distribution, and the time to this event has the generalized linear failure rate distribution. A new distribution to analyze lifetime data is defined from the proposed cure rate model, and its quantile function as well as a general expansion for the moments is derived. We estimate the parameters of the model with cure rate in the presence of covariates for censored observations using maximum likelihood and derive the observed information matrix. We obtain the appropriate matrices for assessing local influence on the parameter estimates under different perturbation schemes and present some ways to perform global influence analysis. The usefulness of the proposed cure rate survival model is illustrated in an application to real data.     

An Improved Test for Continuous Local Martingales

We present a new test for the “continuous martingale hypothesis”. That is, a test for the hypothesis that observed data are from a process which is a continuous local martingale. The basis of the test is an embedded random walk at first passage times, obtained from the well-known representation of a continuous local martingale as a continuous time-change of Brownian motion. With a variety of simulated diffusion processes our new test shows higher power than existing tests using either the crossing tree or the quadratic variation, including the situation where non-negligible drift is present. The power of the test in the presence of jumps is also explored with a variety of simulated jump diffusion processes. The test is also applied to two sequences of high-frequency foreign exchange trade-by-trade data. In both cases the continuous martingale hypothesis is rejected at times less than hourly and we identify significant dependence in price movements at these small scales.     

Statistical Inference on Partially Linear Additive Models with Missing Response Variables and Error-prone Covariates

This paper considers statistical inference for the partially linear additive models, which are useful extensions of additive models and partially linear models. We focus on the case where some covariates are measured with additive errors, and the response variable is sometimes missing. We propose a profile least-squares estimator for the parametric component and show that the resulting estimator is asymptotically normal. To construct a confidence region for the parametric component, we also propose an empirical-likelihood-based statistic, which is shown to have a chi-squared distribution asymptotically. Furthermore, a simulation study is conducted to illustrate the performance of the proposed methods.     

Depth Measures for Multivariate Functional Data

In this article, we address the problem of mining and analyzing multivariate functional data. That is, data where each observation is a set of possibly correlated functions. Complex data of this kind is more and more common in many research fields, particularly in the biomedical context. In this work, we propose and apply a new concept of depth measure for multivariate functional data. With this new depth measure it is possible to generalize robust statistics, such as the median, to the multivariate functional framework, which in turn allows the application of outlier detection, boxplots construction, and nonparametric tests also in this more general framework. We present an application to Electrocardiographic (ECG) signals.     

Operating Characteristics of a Subset Selection Procedure Applied to a Hybrid Randomized Response Model

The operating characteristics (OCs) of a subset ranking and selection procedure are derived for the hybrid randomized response model developed by Jia and McDonald (2009 Jia, F., McDonald, G. (2009). Analyzing hybrid randomized response data with a binomial selection procedure. Commun. Statist. Theor. Meth. 38:784807.[Taylor & Francis Online], [Web of Science ®] , [Google Scholar]). The OCs include the probability of a correct P(CS), the individual selection probability γ_i, and the expected subset size E(S), under the slippage configuration or the equi-spaced configuration. An example comparing failure rates of contraceptive methods is used to illustrate the use of these new results.