A Method of Finding Predictor Genes for a Particular Disease Using a Clustering Algorithm

Clustering Algorithms are nowadays really important tools in microarray data analysis. The different clustering algorithm generally used in biological science does not take into consideration the underlying probability distribution of the data. In this sense, they are heuristic in nature. In this work we proposed a clustering algorithm based on EM Algorithm. It gives 28% less misclassification than the K-means algorithm (which is mostly use in Bio science). We have also shown on a real data set that this algorithm can be efficiently used for detecting the genes which are responsible for a particular disease.     

Marginal zero-inflated regression models for count data

Data sets with excess zeroes are frequently analyzed in many disciplines. A common framework used to analyze such data is the zero-inflated (ZI) regression model. It mixes a degenerate distribution with point mass at zero with a non-degenerate distribution. The estimates from ZI models quantify the effects of covariates on the means of latent random variables, which are often not the quantities of primary interest. Recently, marginal zero-inflated Poisson (MZIP; Long et al. [A marginalized zero-inflated Poisson regression model with overall exposure effects. Stat. Med. 33 (2014), pp. 5151–5165]) and negative binomial (MZINB; Preisser et al., 2016) models have been introduced that model the mean response directly. These models yield covariate effects that have simple interpretations that are, for many applications, more appealing than those available from ZI regression. This paper outlines a general framework for marginal zero-inflated models where the latent distribution is a member of the exponential dispersion family, focusing on common distributions for count data. In particular, our discussion includes the marginal zero-inflated binomial (MZIB) model, which has not been discussed previously. The details of maximum likelihood estimation via the EM algorithm are presented and the properties of the estimators as well as Wald and likelihood ratio-based inference are examined via simulation. Two examples presented illustrate the advantages of MZIP, MZINB, and MZIB models for practical data analysis.     

Estimating survival curves with left truncated and interval censored data via the ems algorithm

It is well-known that the nonparametric maximum likelihood estimator (NPMLE) of a survival function may severely underestimate the survival probabilities at very early times for left truncated data. This problem might be overcome by instead computing a smoothed nonparametric estimator (SNE) via the EMS algorithm. The close connection between the SNE and the maximum penalized likelihood estimator is also established. Extensive Monte Carlo simulations demonstrate the superior performance of the SNE over that of the NPMLE, in terms of either bias or variance, even for moderately large Samples. The methodology is illustrated with an application to the Massachusetts Health Care Panel Study dataset to estimate the probability of being functionally independent for non-poor male and female groups rcspectively.     

Estimation of gaussian mixtures with rotationally invariant covariance matrices

Homoscedastic and heteroscedastic Gaussian mixtures differ in the constraints placed on the covariance matrices of the mixture components. A new mixture, called herein a strophoscedastic mixture, is defined by a new constraint, This constraint requires the matrices to be identical under orthogonal trans¬formations, where different transformations are allowed for different matrices. It is shown that the M-step of the EM method for estimating the parameters of strophoscedastic mixtures from sample data is explicitly solvable using singular value decompositions. Consequently, the EM-based maximum likelihood estimation algorithm is as easily implemented for strophoscedastic mixtures as it is for homoscedastic and heteroscedastic mixtures. An example of a “noisy” Archimedian spiral is presented.     

Computation of an efficient and robust estimator in a semiparametric mixture model

In this article, we propose an efficient and robust estimation for the semiparametric mixture model that is a mixture of unknown location-shifted symmetric distributions. Our estimation is derived by minimizing the profile Hellinger distance (MPHD) between the model and a nonparametric density estimate. We propose a simple and efficient algorithm to find the proposed MPHD estimation. Monte Carlo simulation study is conducted to examine the finite sample performance of the proposed procedure and to compare it with other existing methods. Based on our empirical studies, the newly proposed procedure works very competitively compared to the existing methods for normal component cases and much better for non-normal component cases. More importantly, the proposed procedure is robust when the data are contaminated with outlying observations. A real data application is also provided to illustrate the proposed estimation procedure.     

Estimation of a discriminant function from a mixture of two inverse Weibull distributions

The classification of a random variable based on a mixture can be meaningfully discussed only if the class of all finite mixtures is identifiable. In this paper, we find the maximum-likelihood estimates of the parameters of the mixture of two inverse Weibull distributions by using classified and unclassified observations. Next, we estimate the nonlinear discriminant function of the underlying model. Also, we calculate the total probabilities of misclassification as well as the percentage bias. In addition, we investigate the performance of all results through a series of simulation experiments by means of relative efficiencies. Finally, we analyse some simulated and real data sets through the findings of the paper.     

Reliability models for categorical data

As assumed hypothetical consensus category corresponding to a case being classified provides a basis for assessment of reliability of judges. Equivalent judges are characterised by the joint probability distribution of the judge assignment and the consensus category. Estimates of the conditional probabilities of judge assignment given consensus category and of consensus category given judge assignments are indices of reliability. All parameters can be estimated if data include classifications of a number of cases by 3 or more judges. Restrictive assumptions are imposed to obtain models for data from classifications by two judges. Maximum likelihood estimation is discussed and illustrated by example for the 3 or more judges case.     

Estimation and Properties of a Time-Varying EGARCH(1,1) in Mean Model

Time-varying GARCH-M models are commonly employed in econometrics and financial economics. Yet the recursive nature of the conditional variance makes likelihood analysis of these models computationally infeasible. This article outlines the issues and suggests to employ a Markov chain Monte Carlo algorithm which allows the calculation of a classical estimator via the simulated EM algorithm or a simulated Bayesian solution in only O(T) computational operations, where T is the sample size. Furthermore, the theoretical dynamic properties of a time-varying-parameter EGARCH(1,1)-M are derived. We discuss them and apply the suggested Bayesian estimation to three major stock markets.     

EM浸种处理对玉米叶色值的影响

以玉米品种农大108为试验材料,用SPAD-502仪分别测定了不同浓度EM稀释液浸种处理后的叶色值。试验结果表明:利用不同浓度EM(有效微生物群)稀释液浸种及在玉米拔节期叶面喷施并灌根,可显著提高玉米叶片的叶绿素含量。并遴选出玉米施用EM的最佳浓度为500倍稀释液。     

Nonparametric maximum likelihood estimation for artificially truncated absence data

In manpower planning it is cornmoniy tue case tnat employees withuraw from active service for a period of time before returning to take up post at a later date. Such periods of absence are frequently of major concern to employers who are anxious to ensure that employees return as soon as possible. The distribution of duration of such periods of absence are therefore of considerable interest as is the probability that such employees will ever return to active service. In this paper we derive a nonparametric estimator for such a lifetime distribution based on renewal data which are subject to various forms of incompleteness, namely right censoring, left and right truncation, and forward recurrence. Artificial truncation is used to ensure that the data are time homogeneous. A nonparametric maximum likelihood estimator for the lifetime.