MAP segmentation in Bayesian hidden Markov models: a case study

We consider the problem of estimating the maximum posterior probability (MAP) state sequence for a finite state and finite emission alphabet hidden Markov model (HMM) in the Bayesian setup, where both emission and transition matrices have Dirichlet priors. We study a training set consisting of thousands of protein alignment pairs. The training data is used to set the prior hyperparameters for Bayesian MAP segmentation. Since the Viterbi algorithm is not applicable any more, there is no simple procedure to find the MAP path, and several iterative algorithms are considered and compared. The main goal of the paper is to test the Bayesian setup against the frequentist one, where the parameters of HMM are estimated using the training data.     

Risk Analysis for U.S. Offshore Wind Farms: The Need for an Integrated Approach

Wind power is becoming an increasingly important part of the global energy portfolio, and there is growing interest in developing offshore wind farms in the United States to better utilize this resource. Wind farms have certain environmental benefits, notably near‐zero emissions of greenhouse gases, particulates, and other contaminants of concern. However, there are significant challenges ahead in achieving large‐scale integration of wind power in the United States, particularly offshore wind. Environmental impacts from wind farms are a concern, and these are subject to a number of on‐going studies focused on risks to the environment. However, once a wind farm is built, the farm itself will face a number of risks from a variety of hazards, and managing these risks is critical to the ultimate achievement of long‐term reductions in pollutant emissions from clean energy sources such as wind. No integrated framework currently exists for assessing risks to offshore wind farms in the United States, which poses a challenge for wind farm risk management. In this “Perspective”, we provide an overview of the risks faced by an offshore wind farm, argue that an integrated framework is needed, and give a preliminary starting point for such a framework to illustrate what it might look like. This is not a final framework; substantial work remains. Our intention here is to highlight the research need in this area in the hope of spurring additional research about the risks to wind farms to complement the substantial amount of on‐going research on the risks from wind farms.     

A Bayesian analysis of a change in the parameters of autoregressive time series

In this article, we consider a Bayesian analysis of a possible change in the parameters of autoregressive time series of known order p, AR(p). An unconditional Bayesian test based on highest posterior density (HPD) credible sets is determined. The test is useful to detect a change in any one of the parameters separately. Using the Gibbs sampler algorithm, we approximate the posterior densities of the change point and other parameters to calculate the p-values that define our test.     

Do military veteran and civilian students function differently in college?

Objective: The authors sought to assess military veterans' functioning in college by comparing their experience with that of civilian students. Participants: The study, conducted from April 2012 to February 2013, included 445 civilian and 61 student service member/veteran (SSM/V) undergraduates, drawn from a community college and two 4-year Catholic colleges, in Pennsylvania, New Jersey, and New York. Methods: Participants completed anonymous online surveys. Six areas of functioning in transition to college were examined: Health, Fitting In, Emotional Adjustment, Productivity, Perceived Career Support, and Social Engagement. Results: Students, both SSM/V and civilian, with past exposure to a potentially traumatic event fit in worse than students without such exposure. Past exposure to trauma was associated with poorer emotional adjustment in civilian students, but not in SSM/V. Conclusions: Implications of results were discussed.     

Objective Bayesian analysis of counting experiments with correlated sources of background

Searches for faint signals in counting experiments are often encountered in particle physics and astrophysics, as well as in other fields. Many problems can be reduced to the case of a model with independent and Poisson-distributed signal and background. Often several background contributions are present at the same time, possibly correlated. We provide the analytic solution of the statistical inference problem of estimating the signal in the presence of multiple backgrounds, in the framework of objective Bayes statistics. The model can be written in the form of a product of a single Poisson distribution with a multinomial distribution. The first is related to the total number of events, whereas the latter describes the fraction of events coming from each individual source. Correlations among different backgrounds can be included in the inference problem by a suitable choice of the priors.     

Efficient Bayesian sampling plans for exponential distributions with type-I-censored samples

The aim of this paper is to introduce an efficient Bayesian sampling procedure for exponential distribution with type-I censoring. An online inspection method is suggested to reach a Bayes decision prior the termination time of life test. Bayesian sampling plans (BSPs) with quadratic loss function are established to illustrate the use of the proposed method. Some BSPs are tabulated, and the performance of the proposed BSPs is compared with two existing competitive methods. Numerical results indicate that a significant reduction in the experimental time over the conventional BSP can be achieved when the online inspection method is applied.     

Bayesian testing of restrictions on vector autoregressive models

In this study, we propose a prior on restricted Vector Autoregressive (VAR) models. The prior setting permits efficient Markov Chain Monte Carlo (MCMC) sampling from the posterior of the VAR parameters and estimation of the Bayes factor. Numerical simulations show that when the sample size is small, the Bayes factor is more effective in selecting the correct model than the commonly used Schwarz criterion. We conduct Bayesian hypothesis testing of VAR models on the macroeconomic, state-, and sector-specific effects of employment growth.     

Evaluating Probabilistic Forecasts with Bayesian Signal Detection Models

We propose the use of signal detection theory (SDT) to evaluate the performance of both probabilistic forecasting systems and individual forecasters. The main advantage of SDT is that it provides a principled way to distinguish the response from system diagnosticity, which is defined as the ability to distinguish events that occur from those that do not. There are two challenges in applying SDT to probabilistic forecasts. First, the SDT model must handle judged probabilities rather than the conventional binary decisions. Second, the model must be able to operate in the presence of sparse data generated within the context of human forecasting systems. Our approach is to specify a model of how individual forecasts are generated from underlying representations and use Bayesian inference to estimate the underlying latent parameters. Given our estimate of the underlying representations, features of the classic SDT model, such as the receiver operating characteristic (ROC) curve and the area under the ROC curve (AUC), follow immediately. We show how our approach allows ROC curves and AUCs to be applied to individuals within a group of forecasters, estimated as a function of time, and extended to measure differences in forecastability across different domains. Among the advantages of this method is that it depends only on the ordinal properties of the probabilistic forecasts. We conclude with a brief discussion of how this approach might facilitate decision making.     

Bayes Inference in Constant Partially Accelerated Life Tests for the Generalized Exponential Distribution with Progressive Censoring

In this paper, the problem of constant partially accelerated life tests when the lifetime follows the generalized exponential distribution is considered. Based on progressive type-II censoring scheme, the maximum likelihood and Bayes methods of estimation are used for estimating the distribution parameters and acceleration factor. A Monte Carlo simulation study is carried out to examine the performance of the obtained estimates.     

Geometric Anisotropic Spatial Point Pattern Analysis and Cox Processes

We consider spatial point processes with a pair correlation function, which depends only on the lag vector between a pair of points. Our interest is in statistical models with a special kind of ‘structured’ anisotropy: the pair correlation function is geometric anisotropic if it is elliptical but not spherical. In particular, we study Cox process models with an elliptical pair correlation function, including shot noise Cox processes and log Gaussian Cox processes, and we develop estimation procedures using summary statistics and Bayesian methods. Our methodology is illustrated on real and synthetic datasets of spatial point patterns.