A non-iterative sampling Bayesian method for linear mixed models with normal independent distributions

In this paper, we utilize normal/independent (NI) distributions as a tool for robust modeling of linear mixed models (LMM) under a Bayesian paradigm. The purpose is to develop a non-iterative sampling method to obtain i.i.d. samples approximately from the observed posterior distribution by combining the inverse Bayes formulae, sampling/importance resampling and posterior mode estimates from the expectation maximization algorithm to LMMs with NI distributions, as suggested by Tan et al. [33 Tan, M., Tian, G. and Ng, K. 2003. A noniterative sampling method for computing posteriors in the structure of EM-type algorithms. Statist. Sinica, 13(3): 625–640. [Web of Science ®] , [Google Scholar]]. The proposed algorithm provides a novel alternative to perfect sampling and eliminates the convergence problems of Markov chain Monte Carlo methods. In order to examine the robust aspects of the NI class, against outlying and influential observations, we present a Bayesian case deletion influence diagnostics based on the Kullback–Leibler divergence. Further, some discussions on model selection criteria are given. The new methodologies are exemplified through a real data set, illustrating the usefulness of the proposed methodology.     

A multivariate rank test for comparing mass size distributions

Particle size analyses of a raw material are commonplace in the mineral processing industry. Knowledge of particle size distributions is crucial in planning milling operations to enable an optimum degree of liberation of valuable mineral phases, to minimize plant losses due to an excess of oversize or undersize material or to attain a size distribution that fits a contractual specification. The problem addressed in the present paper is how to test the equality of two or more underlying size distributions. A distinguishing feature of these size distributions is that they are not based on counts of individual particles. Rather, they are mass size distributions giving the fractions of the total mass of a sampled material lying in each of a number of size intervals. As such, the data are compositional in nature, using the terminology of Aitchison [1 Aitchison, J. 1986. “The Statistical Analysis of Compositional Data”. London: Chapman and Hall. [Crossref] , [Google Scholar]] that is, multivariate vectors the components of which add to 100%. In the literature, various versions of Hotelling's T ² have been used to compare matched pairs of such compositional data. In this paper, we propose a robust test procedure based on ranks as a competitor to Hotelling's T ². In contrast to the latter statistic, the power of the rank test is not unduly affected by the presence of outliers or of zeros among the data.     

Influence diagnostics in heteroscedastic and/or autoregressive nonlinear elliptical models for correlated data

In this paper, we propose nonlinear elliptical models for correlated data with heteroscedastic and/or autoregressive structures. Our aim is to extend the models proposed by Russo et al. 22 by considering a more sophisticated scale structure to deal with variations in data dispersion and/or a possible autocorrelation among measurements taken throughout the same experimental unit. Moreover, to avoid the possible influence of outlying observations or to take into account the non-normal symmetric tails of the data, we assume elliptical contours for the joint distribution of random effects and errors, which allows us to attribute different weights to the observations. We propose an iterative algorithm to obtain the maximum-likelihood estimates for the parameters and derive the local influence curvatures for some specific perturbation schemes. The motivation for this work comes from a pharmacokinetic indomethacin data set, which was analysed previously by Bocheng and Xuping 1 under normality.     

Estimation and diagnostics for heteroscedastic nonlinear regression models based on scale mixtures of skew-normal distributions

An extension of some standard likelihood based procedures to heteroscedastic nonlinear regression models under scale mixtures of skew-normal (SMSN) distributions is developed. This novel class of models provides a useful generalization of the heteroscedastic symmetrical nonlinear regression models (Cysneiros et al., 2010), since the random term distributions cover both symmetric as well as asymmetric and heavy-tailed distributions such as skew-t, skew-slash, skew-contaminated normal, among others. A simple EM-type algorithm for iteratively computing maximum likelihood estimates of the parameters is presented and the observed information matrix is derived analytically. In order to examine the performance of the proposed methods, some simulation studies are presented to show the robust aspect of this flexible class against outlying and influential observations and that the maximum likelihood estimates based on the EM-type algorithm do provide good asymptotic properties. Furthermore, local influence measures and the one-step approximations of the estimates in the case-deletion model are obtained. Finally, an illustration of the methodology is given considering a data set previously analyzed under the homoscedastic skew-t nonlinear regression model.     

Estimation of extreme quantiles from heavy and light tailed distributions

In Gardes et al. (2011), a new family of distributions is introduced, depending on two parameters τ$\tau$ and θ$\theta$, which encompasses Pareto-type distributions as well as Weibull tail-distributions. Estimators for θ$\theta$ and extreme quantiles are also proposed, but they both depend on the unknown parameter τ$\tau$, making them useless in practical situations. In this paper, we propose an estimator of τ$\tau$ which is independent of θ$\theta$. Plugging our estimator of τ$\tau$ in the two previous ones allows us to estimate extreme quantiles from Pareto-type and Weibull tail-distributions in an unified way. The asymptotic distributions of our three new estimators are established and their efficiency is illustrated on a small simulation study and on a real data set.     

Decision-Making with Heterogeneous Sources of Information

In any model the values of estimates for various parameters are obtained from different sources each with its own level of uncertainty. When the probability distributions of the estimates are obtained as opposed to point values only, the measurement uncertainties in the parameter estimates may be addressed. However, the sources used for obtaining the data and the models used to select appropriate distributions are of differing degrees of uncertainty. A hierarchy of different sources of uncertainty based upon one's ability to validate data and models empirically is presented. When model parameters are aggregated with different levels of the hierarchy represented, this implies distortion or degradation in the utility and validity of the models used. Means to identify and deal with such heterogeneous data sources are explored, and a number of approaches to addressing this problem is presented. One approach, using Range/Confidence Estimates coupled with an Information Value Analysis Process, is presented as an example.     

Bayesian analysis of agricultural field experiments

The paper describes Bayesian analysis for agricultural field experiments, a topic that has received very little previous attention, despite a vast frequentist literature. Adoption of the Bayesian paradigm simplifies the interpretation of the results, especially in ranking and selection. Also, complex formulations can be analysed with comparative ease, by using Markov chain Monte Carlo methods. A key ingredient in the approach is the need for spatial representations of the unobserved fertility patterns. This is discussed in detail. Problems caused by outliers and by jumps in fertility are tackled via hierarchical t formulations that may find use in other contexts. The paper includes three analyses of variety trials for yield and one example involving binary data; none is entirely straightforward. Some comparisons with frequentist analyses are made.