Posterior Analysis for Normalized Random Measures with Independent Increments

Abstract.  One of the main research areas in Bayesian Nonparametrics is the proposal and study of priors which generalize the Dirichlet process. In this paper, we provide a comprehensive Bayesian non-parametric analysis of random probabilities which are obtained by normalizing random measures with independent increments (NRMI). Special cases of these priors have already shown to be useful for statistical applications such as mixture models and species sampling problems. However, in order to fully exploit these priors, the derivation of the posterior distribution of NRMIs is crucial: here we achieve this goal and, indeed, provide explicit and tractable expressions suitable for practical implementation. The posterior distribution of an NRMI turns out to be a mixture with respect to the distribution of a specific latent variable. The analysis is completed by the derivation of the corresponding predictive distributions and by a thorough investigation of the marginal structure. These results allow to derive a generalized Blackwell–MacQueen sampling scheme, which is then adapted to cover also mixture models driven by general NRMIs.     

On square ordinal contingency tables: a comparison of social class and income mobility for the same individuals

Summary.  Square contingency tables with matching ordinal rows and columns arise in particular as empirical transition matrices and the paper considers these in the context of social class and income mobility tables. Such tables relate the socio-economic position of parents to the socio-economic position of their child in adulthood. The level of association between parental and child socio-economic position is taken as a measure of mobility. Several approaches to analysis are described and illustrated by UK data in which interest focuses on comparisons of social class and income mobility tables that are derived from the same individuals. Account is taken of the use of the same individuals in the two tables. Additionally comparisons over time are considered.     

ASSOCIATIONS BETWEEN AIR POLLUTION AND HOSPITAL VISITS FOR CARDIOVASCULAR DISEASES IN THE ELDERLY IN SYDNEY USING BAYESIAN STATISTICAL METHODS

Using generalized linear models (GLMs), Jalaludin  et al. (2006;  J. Exposure Analysis and Epidemiology   16 , 225–237) studied the association between the daily number of visits to emergency departments for cardiovascular disease by the elderly (65+) and five measures of ambient air pollution. Bayesian methods provide an alternative approach to classical time series modelling and are starting to be more widely used. This paper considers Bayesian methods using the dataset used by Jalaludin  et al.  (2006) , and compares the results from Bayesian methods with those obtained by Jalaludin  et al.  (2006) using GLM methods.     

Robust tests for the common principal components model

When dealing with several populations, the common principal components (CPC) model assumes equal principal axes but different variances along them. In this paper, a robust log-likelihood ratio statistic allowing to test the null hypothesis of a CPC model versus no restrictions on the scatter matrices is introduced. The proposal plugs into the classical log-likelihood ratio statistic robust scatter estimators. Using the same idea, a robust log-likelihood ratio and a robust Wald-type statistic for testing proportionality against a CPC model are considered. Their asymptotic distributions under the null hypothesis and their partial influence functions are derived. A small simulation study allows to compare the behavior of the classical and robust tests, under normal and contaminated data.     

Nonparametric control charts based on runs and Wilcoxon-type rank-sum statistics

In this article, we introduce three new distribution-free Shewhart-type control charts that exploit run and Wilcoxon-type rank-sum statistics to detect possible shifts of a monitored process. Exact formulae for the alarm rate, the run length distribution, and the average run length (ARL) are all derived. A key advantage of these charts is that, due to their nonparametric nature, the false alarm rate (FAR) and in-control run length distribution is the same for all continuous process distributions. Tables are provided for the implementation of the charts for some typical FAR values. Furthermore, a numerical study carried out reveals that the new charts are quite flexible and efficient in detecting shifts to Lehmann-type out-of-control situations.     

Multivariate regression analysis of panel data with binary outcomes applied to unemployment data

Summary  In panel studies binary outcome measures together with time stationary and time varying explanatory variables are collected over time on the same individual. Therefore, a regression analysis for this type of data must allow for the correlation among the outcomes of an individual. The multivariate probit model of Ashford and Sowden (1970) was the first regression model for multivariate binary responses. However, a likelihood analysis of the multivariate probit model with general correlation structure for higher dimensions is intractable due to the maximization over high dimensional integrals thus severely restricting ist applicability so far. Czado (1996) developed a Markov Chain Monte Carlo (MCMC) algorithm to overcome this difficulty. In this paper we present an application of this algorithm to unemployment data from the Panel Study of Income Dynamics involving 11 waves of the panel study. In addition we adapt Bayesian model checking techniques based on the posterior predictive distribution (see for example Gelman et al. (1996)) for the multivariate probit model. These help to identify mean and correlation specification which fit the data well. C. Czado was supported by research grant OGP0089858 of the Natural Sciences and Engineering Research Council of Canada.     

Recent and classical goodness-of-fit tests for the Poisson distribution

We give a critical synopsis of classical and recent tests for Poissonity, our emphasis being on procedures which are consistent against general alternatives. Two classes of weighted Cramér–von Mises type test statistics, based on the empirical probability generating function process, are studied in more detail. Both of them generalize already known test statistics by introducing a weighting parameter, thus providing more flexibility with regard to power against specific alternatives. In both cases, we prove convergence in distribution of the statistics under the null hypothesis in the setting of a triangular array of rowwise independent and identically distributed random variables as well as consistency of the corresponding test against general alternatives. Therefore, a sound theoretical basis is provided for the parametric bootstrap procedure, which is applied to obtain critical values in a large-scale simulation study. Each of the tests considered in this study, when implemented via the parametric bootstrap method, maintains a nominal level of significance very closely, even for small sample sizes. The procedures are applied to four well-known data sets.     

Detecting homogeneous segments in DNA sequences by using hidden Markov models

In recent years there has been a rapid growth in the amount of DNA being sequenced and in its availability through genetic databases. Statistical techniques which identify structure within these sequences can be of considerable assistance to molecular biologists particularly when they incorporate the discrete nature of changes caused by evolutionary processes. This paper focuses on the detection of homogeneous segments within heterogeneous DNA sequences. In particular, we study an intron from the chimpanzee α-fetoprotein gene; this protein plays an important role in the embryonic development of mammals. We present a Bayesian solution to this segmentation problem using a hidden Markov model implemented by Markov chain Monte Carlo methods. We consider the important practical problem of specifying informative prior knowledge about sequences of this type. Two Gibbs sampling algorithms are contrasted and the sensitivity of the analysis to the prior specification is investigated. Model selection and possible ways to overcome the label switching problem are also addressed. Our analysis of intron 7 identifies three distinct homogeneous segment types, two of which occur in more than one region, and one of which is reversible.     

Binary probability maps using a hidden conditional autoregressive Gaussian process with an application to Finnish common toad data

The Finnish common toad data of Heikkinen and Hogmander are reanalysed using an alternative fully Bayesian model that does not require a pseudolikelihood approximation and an alternative prior distribution for the true presence or absence status of toads in each 10 km×10 km square. Markov chain Monte Carlo methods are used to obtain posterior probability estimates of the square-specific presences of the common toad and these are presented as a map. The results are different from those of Heikkinen and Hogmander and we offer an explanation in terms of the prior used for square-specific presence of the toads. We suggest that our approach is more faithful to the data and avoids unnecessary confounding of effects. We demonstrate how to extend our model efficiently with square-specific covariates and illustrate this by introducing deterministic spatial changes.