An empirical comparison of two approaches for CDPCA in high-dimensional data

Statistical Methods & Applications - Modified principal component analysis techniques, specially those yielding sparse solutions, are attractive due to its usefulness for interpretation...     

Time-varying clustering of multivariate longitudinal observations

Abstract

We propose a statistical method for clustering multivariate longitudinal data into homogeneous groups. This method relies on a time-varying extension of the classical K-means algorithm, where a multivariate vector autoregressive model is additionally assumed for modeling the evolution of clusters' centroids over time. Model inference is based on a least-squares method and on a coordinate descent algorithm. To illustrate our work, we consider a longitudinal dataset on human development. Three variables are modeled, namely life expectancy, education and gross domestic product.     

Multivariate linear regression for heterogeneous data

The problem of multivariate regression modelling in the presence of heterogeneous data is dealt to address the relevant issue of the influence of such heterogeneity in assessing the linear relations between responses and explanatory variables. In spite of its popularity, clusterwise regression is not designed to identify the linear relationships within ‘homogeneous’ clusters exhibiting internal cohesion and external separation. A within-clusterwise regression is introduced to achieve this aim and, since the possible presence of a linear relation ‘between’ clusters should be also taken into account, a general regression model is introduced to account for both the between-cluster and the within-cluster regression variation. Some decompositions of the variance of the responses accounted for are also given, the least-squares estimation of the parameters is derived, together with an appropriate coordinate descent algorithms and the performance of the proposed methodology is evaluated in different datasets.     

Clustering microarray data using model-based double K-means

The microarray technology allows the measurement of expression levels of thousands of genes simultaneously. The dimension and complexity of gene expression data obtained by microarrays create challenging data analysis and management problems ranging from the analysis of images produced by microarray experiments to biological interpretation of results. Therefore, statistical and computational approaches are beginning to assume a substantial position within the molecular biology area. We consider the problem of simultaneously clustering genes and tissue samples (in general conditions) of a microarray data set. This can be useful for revealing groups of genes involved in the same molecular process as well as groups of conditions where this process takes place. The need of finding a subset of genes and tissue samples defining a homogeneous block had led to the application of double clustering techniques on gene expression data. Here, we focus on an extension of standard K-means to simultaneously cluster observations and features of a data matrix, namely double K-means introduced by Vichi (2000). We introduce this model in a probabilistic framework and discuss the advantages of using this approach. We also develop a coordinate ascent algorithm and test its performance via simulation studies and real data set. Finally, we validate the results obtained on the real data set by building resampling confidence intervals for block centroids.