Residual analysis for spatial point processes (with discussion)

Summary.  We define residuals for point process models fitted to spatial point pattern data, and we propose diagnostic plots based on them. The residuals apply to any point process model that has a conditional intensity; the model may exhibit spatial heterogeneity, interpoint interaction and dependence on spatial covariates. Some existing ad hoc methods for model checking (quadrat counts, scan statistic, kernel smoothed intensity and Berman's diagnostic) are recovered as special cases. Diagnostic tools are developed systematically, by using an analogy between our spatial residuals and the usual residuals for (non-spatial) generalized linear models. The conditional intensity λ plays the role of the mean response. This makes it possible to adapt existing knowledge about model validation for generalized linear models to the spatial point process context, giving recommendations for diagnostic plots. A plot of smoothed residuals against spatial location, or against a spatial covariate, is effective in diagnosing spatial trend or co-variate effects. Q – Q -plots of the residuals are effective in diagnosing interpoint interaction.     

A note on measures of similarity based on centrality

This note presents a measure of similarity between connected nodes in terms of centrality based on Euclidean distances, and compares it to ‘assortative mixing’ [Newman, M.E.J., 2002. Assortative mixing in networks. Physical Review Letters 89, 208701], which is based on Pearson correlation coefficient. This study suggests that the measure based on Euclidean distances may be more appropriate for relatively smaller (N < 500) and denser networks.     

企业研发效率测度与比较——以中国各地区大中型工业企业数据为例

研发效率的高低是影响企业研发决策和经济增长效率的重要因素。已有研究在选择分析方法的时候往往只是根据主观判断,并没有给出明确和客观的理由。而且由于在样本区间、指标选择和数据处理等方面存在较大差异,不同研究之间难以进行直接比较,其核算结果也不能作为判断哪种方法有效的依据。本文在相同的样本区间、指标选择和数据处理前提下,针对中国各地区大中型工业企业1996—2005年的面板数据样本,利用索洛剩余核算、随机前沿分析和数据包络分析等方法对中国企业的研发效率进行评价。通过不同指标和方法的分析比较,可以得到相对更为全面和准确的测度,从而对中国企业的研发行为及效率做出较为客观的评价。     

A Weighted Least Squares Approach to Levene's Test of Homogeneity of Variance

In 1960 Levene suggested a potentially robust test of homogeneity of variance based on an ordinary least squares analysis of variance of the absolute values of mean-based residuals. Levene's test has since been shown to have inflated levels of significance when based on the F-distribution, and tests a hypothesis other than homogeneity of variance when treatments are unequally replicated, but the incorrect formulation is now standard output in several statistical packages. This paper develops a weighted least squares analysis of variance of the absolute values of both mean-based and median-based residuals. It shows how to adjust the residuals so that tests using the F -statistic focus on homogeneity of variance for both balanced and unbalanced designs. It shows how to modify the F -statistics currently produced by statistical packages so that the distribution of the resultant test statistic is closer to an F-distribution than is currently the case. The weighted least squares approach also produces component mean squares that are unbiased irrespective of which variable is used in Levene's test. To complete this aspect of the investigation the paper derives exact second-order moments of the component sums of squares used in the calculation of the mean-based test statistic. It shows that, for large samples, both ordinary and weighted least squares test statistics are equivalent; however they are over-dispersed compared to an F variable.     

Bootstrapping regression models with BLUS residuals

To bootstrap a regression problem, pairs of response and explanatory variables or residuals can be resam‐pled, according to whether we believe that the explanatory variables are random or fixed. In the latter case, different residuals have been proposed in the literature, including the ordinary residuals (Efron 1979), standardized residuals (Bickel & Freedman 1983) and Studentized residuals (Weber 1984). Freedman (1981) has shown that the bootstrap from ordinary residuals is asymptotically valid when the number of cases increases and the number of variables is fixed. Bickel & Freedman (1983) have shown the asymptotic validity for ordinary residuals when the number of variables and the number of cases both increase, provided that the ratio of the two converges to zero at an appropriate rate. In this paper, the authors introduce the use of BLUS (Best Linear Unbiased with Scalar covariance matrix) residuals in bootstrapping regression models. The main advantage of the BLUS residuals, introduced in Theil (1965), is that they are uncorrelated. The main disadvantage is that only n —p residuals can be computed for a regression problem with n cases and p variables. The asymptotic results of Freedman (1981) and Bickel & Freedman (1983) for the ordinary (and standardized) residuals are generalized to the BLUS residuals. A small simulation study shows that even though only n — p residuals are available, in small samples bootstrapping BLUS residuals can be as good as, and sometimes better than, bootstrapping from standardized or Studentized residuals.     

A non-parametric statistic for testing conditional heteroscedasticity for unobserved component models

When prediction intervals are constructed using unobserved component models (UCM), problems can arise due to the possible existence of components that may or may not be conditionally heteroscedastic. Accurate coverage depends on correctly identifying the source of the heteroscedasticity. Different proposals for testing heteroscedasticity have been applied to UCM; however, in most cases, these procedures are unable to identify the heteroscedastic component correctly. The main issue is that test statistics are affected by the presence of serial correlation, causing the distribution of the statistic under conditional homoscedasticity to remain unknown. We propose a nonparametric statistic for testing heteroscedasticity based on the well-known Wilcoxon''s rank statistic. We study the asymptotic validation of the statistic and examine bootstrap procedures for approximating its finite sample distribution. Simulation results show an improvement in the size of the homoscedasticity tests and a power that is clearly comparable with the best alternative in the literature. We also apply the test on real inflation data. Looking for the presence of a conditionally heteroscedastic effect on the error terms, we arrive at conclusions that almost all cases are different than those given by the alternative test statistics presented in the literature.     

Diagnostics of multiple group influential observations for logistic regression models

In this paper, two new multiple influential observation detection methods, GCD.GSPR and mCD*, are introduced for logistic regression. The proposed diagnostic measures are compared with the generalized difference in fits (GDFFITS) and the generalized squared difference in beta (GSDFBETA), which are multiple influential diagnostics. The simulation study is conducted with one, two and five independent variable logistic regression models. The performance of the diagnostic measures is examined for a single contaminated independent variable for each model and in the case where all the independent variables are contaminated with certain contamination rates and intensity. In addition, the performance of the diagnostic measures is compared in terms of the correct identification rate and swamping rate via a frequently referred to data set in the literature.     

Influence diagnostics in gamma ridge regression model

In this article, we proposed some influence diagnostics for the gamma regression model (GRM) and the gamma ridge regression model (GRRM). We assess the impact of influential observations on the GRM and GRRM estimates by extending the work of Pregibon [Logistic regression diagnostics. Ann Stat. 1981;9:705–724] and Walker and Birch [Influence measures in ridge regression. Technometrics. 1988;30:221–227]. Comparison of both models is made and demonstrated with the help of a simulation study and a real data set. We report some momentous results in detecting the influential observations and their effects on the GRM and GRRM estimates.     

Approximating the risk score for disease diagnosis using MARS

In disease screening and diagnosis, often multiple markers are measured and combined to improve the accuracy of diagnosis. McIntosh and Pepe [Combining several screening tests: optimality of the risk score, Biometrics 58 (2002), pp. 657–664] showed that the risk score, defined as the probability of disease conditional on multiple markers, is the optimal function for classification based on the Neyman–Pearson lemma. They proposed a two-step procedure to approximate the risk score. However, the resulting receiver operating characteristic (ROC) curve is only defined in a subrange (L, h) of false-positive rates in (0,1) and the determination of the lower limit L needs extra prior information. In practice, most diagnostic tests are not perfect, and it is usually rare that a single marker is uniformly better than the other tests. Using simulation, I show that multivariate adaptive regression spline is a useful tool to approximate the risk score when combining multiple markers, especially when ROC curves from multiple tests cross. The resulting ROC is defined in the whole range of (0,1) and is easy to implement and has intuitive interpretation. The sample code of the application is shown in the appendix.     

Change-Point Tests for the Error Distribution in Non-parametric Regression

Abstract.  Several testing procedures are proposed that can detect change-points in the error distribution of non-parametric regression models. Different settings are considered where the change-point either occurs at some time point or at some value of the covariate. Fixed as well as random covariates are considered. Weak convergence of the suggested difference of sequential empirical processes based on non-parametrically estimated residuals to a Gaussian process is proved under the null hypothesis of no change-point. In the case of testing for a change in the error distribution that occurs with increasing time in a model with random covariates the test statistic is asymptotically distribution free and the asymptotic quantiles can be used for the test. This special test statistic can also detect a change in the regression function. In all other cases the asymptotic distribution depends on unknown features of the data-generating process and a bootstrap procedure is proposed in these cases. The small sample performances of the proposed tests are investigated by means of a simulation study and the tests are applied to a data example.