Estimation using plug-in of the stationary distribution and Shannon entropy of continuous time Markov processes

A natural way to deal with the uncertainty of an ergodic finite state space Markov process is to investigate the entropy of its stationary distribution. When the process is observed, it becomes necessary to estimate this entropy.We estimate both the stationary distribution and its entropy by plug-in of the estimators of the infinitesimal generator. Three situations of observation are discussed: one long trajectory is observed, several independent short trajectories are observed, or the process is observed at discrete times. The good asymptotic behavior of the plug-in estimators is established. We also illustrate the behavior of the estimators through simulation.