Robust group-Lasso for functional regression model

In this article, we consider the problem of selecting functional variables using the L1 regularization in a functional linear regression model with a scalar response and functional predictors, in the presence of outliers. Since the LASSO is a special case of the penalized least-square regression with L1 penalty function, it suffers from the heavy-tailed errors and/or outliers in data. Recently, Least Absolute Deviation (LAD) and the LASSO methods have been combined (the LAD-LASSO regression method) to carry out robust parameter estimation and variable selection simultaneously for a multiple linear regression model. However, variable selection of the functional predictors based on LASSO fails since multiple parameters exist for a functional predictor. Therefore, group LASSO is used for selecting functional predictors since group LASSO selects grouped variables rather than individual variables. In this study, we propose a robust functional predictor selection method, the LAD-group LASSO, for a functional linear regression model with a scalar response and functional predictors. We illustrate the performance of the LAD-group LASSO on both simulated and real data.     

Simultaneous structure estimation and variable selection in partial linear varying coefficient models for longitudinal data

Partial linear varying coefficient models (PLVCM) are often considered for analysing longitudinal data for a good balance between flexibility and parsimony. The existing estimation and variable selection methods for this model are mainly built upon which subset of variables have linear or varying effect on the response is known in advance, or say, model structure is determined. However, in application, this is unreasonable. In this work, we propose a simultaneous structure estimation and variable selection method, which can do simultaneous coefficient estimation and three types of selections: varying and constant effects selection, relevant variable selection. It can be easily implemented in one step by employing a penalized M-type regression, which uses a general loss function to treat mean, median, quantile and robust mean regressions in a unified framework. Consistency in the three types of selections and oracle property in estimation are established as well. Simulation studies and real data analysis also confirm our method.     

Variable selection in joint location and scale models of the skew-normal distribution

A regression model with skew-normal errors provides a useful extension for ordinary normal regression models when the data set under consideration involves asymmetric outcomes. Variable selection is an important issue in all regression analyses, and in this paper, we investigate the simultaneously variable selection in joint location and scale models of the skew-normal distribution. We propose a unified penalized likelihood method which can simultaneously select significant variables in the location and scale models. Furthermore, the proposed variable selection method can simultaneously perform parameter estimation and variable selection in the location and scale models. With appropriate selection of the tuning parameters, we establish the consistency and the oracle property of the regularized estimators. Simulation studies and a real example are used to illustrate the proposed methodologies.     

Consistent and robust variable selection in regression based on Wald test

Selection of relevant predictor variables for building a model is an important problem in the multiple linear regression. Variable selection method based on ordinary least squares estimator fails to select the set of relevant variables for building a model in the presence of outliers and leverage points. In this article, we propose a new robust variable selection criterion for selection of relevant variables in the model and establish its consistency property. Performance of the proposed method is evaluated through simulation study and real data.     

Hierarchically penalized quantile regression

In many regression problems, predictors are naturally grouped. For example, when a set of dummy variables is used to represent categorical variables, or a set of basis functions of continuous variables is included in the predictor set, it is important to carry out a feature selection both at the group level and at individual variable levels within the group simultaneously. To incorporate the group and variables within-group information into a regularized model fitting, several regularization methods have been developed, including the Cox regression and the conditional mean regression. Complementary to earlier works, the simultaneous group and within-group variables selection method is examined in quantile regression. We propose a hierarchically penalized quantile regression, and show that the hierarchical penalty possesses the oracle property in quantile regression, as well as in the Cox regression. The proposed method is evaluated through simulation studies and a real data application.     

Regression models with ordered multiple categorical predictors

Ordered multiple categorical (MC) variable has been widely considered and studied as response variable, and few studies have carefully considered it as a predictor in linear regression. When doing this, the existence of some pseudo-categories may result in overfitting, and to detect those pseudo-categories by hypothesis test of all dummy variables might have low specificity. In this paper, we propose a transformation method of dummy variables for such ordered MC predictors, after which a model selection method combined with BIC will be elaborated. Theoretical consistency of our model selection method is established under some common assumptions. Both simulation studies and real data analysis of a medical survey indicate that our method provides good performance and is applicable to a wide range of biomedical research.     

Noncrossing structured additive multiple-output Bayesian quantile regression models

Quantile regression models are a powerful tool for studying different points of the conditional distribution of univariate response variables. Their multivariate counterpart extension though is not straightforward, starting with the definition of multivariate quantiles. We propose here a flexible Bayesian quantile regression model when the response variable is multivariate, where we are able to define a structured additive framework for all predictor variables. We build on previous ideas considering a directional approach to define the quantiles of a response variable with multiple outputs, and we define noncrossing quantiles in every directional quantile model. We define a Markov chain Monte Carlo (MCMC) procedure for model estimation, where the noncrossing property is obtained considering a Gaussian process design to model the correlation between several quantile regression models. We illustrate the results of these models using two datasets: one on dimensions of inequality in the population, such as income and health; the second on scores of students in the Brazilian High School National Exam, considering three dimensions for the response variable.     

Nonlinear mixed-effects scalar-on-function models and variable selection

This paper is motivated by our collaborative research and the aim is to model clinical assessments of upper limb function after stroke using 3D-position and 4D-orientation movement data. We present a new nonlinear mixed-effects scalar-on-function regression model with a Gaussian process prior focusing on the variable selection from a large number of candidates including both scalar and function variables. A novel variable selection algorithm has been developed, namely functional least angle regression. As it is essential for this algorithm, we studied the representation of functional variables with different methods and the correlation between a scalar and a group of mixed scalar and functional variables. We also propose a new stopping rule for practical use. This algorithm is efficient and accurate for both variable selection and parameter estimation even when the number of functional variables is very large and the variables are correlated. And thus the prediction provided by the algorithm is accurate. Our comprehensive simulation study showed that the method is superior to other existing variable selection methods. When the algorithm was applied to the analysis of the movement data, the use of the nonlinear random-effect model and the function variables significantly improved the prediction accuracy for the clinical assessment.

     

Selection of Predictors in Distance-Based Regression

Distance-based regression is a prediction method consisting of two steps: from distances between observations we obtain latent variables which, in turn, are the regressors in an ordinary least squares linear model. Distances are computed from actually observed predictors by means of a suitable dissimilarity function. Being generally nonlinearly related with the response, their selection by the usual F tests is unavailable. In this article, we propose a solution to this predictor selection problem by defining generalized test statistics and adapting a nonparametric bootstrap method to estimate their p-values. We include a numerical example with automobile insurance data.     

Some overall properties of seemingly unrelated regression models

Seemingly unrelated regression models are extensions of linear regression models which allow correlated errors between equations. Estimations and inferences of singular seemingly unrelated regression models involve some complicated operations of the given matrices in the models and their generalized inverses. In this study, we characterize the consistency, natural restrictions, estimability of parametric functions under a singular seemingly unrelated regression model using the matrix rank method. We also derive necessary and sufficient conditions for the ordinary least squares estimators and the best linear unbiased estimators of parametric functions to be equal under seemingly unrelated regression models.     

A variable selection approach to monotonic regression with Bernstein polynomials

One of the standard problems in statistics consists of determining the relationship between a response variable and a single predictor variable through a regression function. Background scientific knowledge is often available that suggests that the regression function should have a certain shape (e.g. monotonically increasing or concave) but not necessarily a specific parametric form. Bernstein polynomials have been used to impose certain shape restrictions on regression functions. The Bernstein polynomials are known to provide a smooth estimate over equidistant knots. Bernstein polynomials are used in this paper due to their ease of implementation, continuous differentiability, and theoretical properties. In this work, we demonstrate a connection between the monotonic regression problem and the variable selection problem in the linear model. We develop a Bayesian procedure for fitting the monotonic regression model by adapting currently available variable selection procedures. We demonstrate the effectiveness of our method through simulations and the analysis of real data.     

Evaluation of alternative model selection criteria in the analysis of unimodal response curves using CART

We investigated CART performance with a unimodal response curve for one continuous response and four continuous explanatory variables, where two variables were important (i.e. directly related to the response) and the other two were not. We explored performance under three relationship strengths and two explanatory variable conditions: equal importance and one variable four times as important as the other. We compared CART variable selection performance using three tree-selection rules ('minimum risk', 'minimum risk complexity', 'one standard error') to stepwise polynomial ordinary least squares (OLS) under four sample size conditions. The one-standard-error and minimum risk-complexity methods performed about as well as stepwise OLS with large sample sizes when the relationship was strong. With weaker relationships, equally important explanatory variables and larger sample sizes, the one-standard-error and minimum-risk-complexity rules performed better than stepwise OLS. With weaker relationships and explanatory variables of unequal importance, tree-structured methods did not perform as well as stepwise OLS. Comparing performance within tree-structured methods, with a strong relationship and equally important explanatory variables, the one-standard-error rule was more likely to choose the correct model than were the other tree-selection rules. The minimum-risk-complexity rule was more likely to choose the correct model than were the other tree-selection rules (1) with weaker relationships and equally important explanatory variables; and (2) under all relationship strengths when explanatory variables were of unequal importance and sample sizes were lower.     

Variable selection in joint mean and variance models of Box–Cox transformation

In many applications, a single Box–Cox transformation cannot necessarily produce the normality, constancy of variance and linearity of systematic effects. In this paper, by establishing a heterogeneous linear regression model for the Box–Cox transformed response, we propose a hybrid strategy, in which variable selection is employed to reduce the dimension of the explanatory variables in joint mean and variance models, and Box–Cox transformation is made to remedy the response. We propose a unified procedure which can simultaneously select significant variables in the joint mean and variance models of Box–Cox transformation which provide a useful extension of the ordinary normal linear regression models. With appropriate choice of the tuning parameters, we establish the consistency of this procedure and the oracle property of the obtained estimators. Moreover, we also consider the maximum profile likelihood estimator of the Box–Cox transformation parameter. Simulation studies and a real example are used to illustrate the application of the proposed methods.     

Sparse Bayesian variable selection in multinomial probit regression model with application to high-dimensional data classification

Here we consider a multinomial probit regression model where the number of variables substantially exceeds the sample size and only a subset of the available variables is associated with the response. Thus selecting a small number of relevant variables for classification has received a great deal of attention. Generally when the number of variables is substantial, sparsity-enforcing priors for the regression coefficients are called for on grounds of predictive generalization and computational ease. In this paper, we propose a sparse Bayesian variable selection method in multinomial probit regression model for multi-class classification. The performance of our proposed method is demonstrated with one simulated data and three well-known gene expression profiling data: breast cancer data, leukemia data, and small round blue-cell tumors. The results show that compared with other methods, our method is able to select the relevant variables and can obtain competitive classification accuracy with a small subset of relevant genes.     

Variable Selection in Joint Location and Scale Models of the Skew-t-Normal Distribution

Variable selection is an important issue in all regression analysis, and in this article, we investigate the simultaneous variable selection in joint location and scale models of the skew-t-normal distribution when the dataset under consideration involves heavy tail and asymmetric outcomes. We propose a unified penalized likelihood method which can simultaneously select significant variables in the location and scale models. Furthermore, the proposed variable selection method can simultaneously perform parameter estimation and variable selection in the location and scale models. With appropriate selection of the tuning parameters, we establish the consistency and the oracle property of the regularized estimators. These estimators are compared by simulation studies.     

Supervised functional principal component analysis

In functional linear regression, one conventional approach is to first perform functional principal component analysis (FPCA) on the functional predictor and then use the first few leading functional principal component (FPC) scores to predict the response variable. The leading FPCs estimated by the conventional FPCA stand for the major source of variation of the functional predictor, but these leading FPCs may not be mostly correlated with the response variable, so the prediction accuracy of the functional linear regression model may not be optimal. In this paper, we propose a supervised version of FPCA by considering the correlation of the functional predictor and response variable. It can automatically estimate leading FPCs, which represent the major source of variation of the functional predictor and are simultaneously correlated with the response variable. Our supervised FPCA method is demonstrated to have a better prediction accuracy than the conventional FPCA method by using one real application on electroencephalography (EEG) data and three carefully designed simulation studies.     

Variable selection for varying dispersion beta regression model

The beta regression models are commonly used by practitioners to model variables that assume values in the standard unit interval (0, 1). In this paper, we consider the issue of variable selection for beta regression models with varying dispersion (VBRM), in which both the mean and the dispersion depend upon predictor variables. Based on a penalized likelihood method, the consistency and the oracle property of the penalized estimators are established. Following the coordinate descent algorithm idea of generalized linear models, we develop new variable selection procedure for the VBRM, which can efficiently simultaneously estimate and select important variables in both mean model and dispersion model. Simulation studies and body fat data analysis are presented to illustrate the proposed methods.     

Robust multivariate mixture regression models with incomplete data

Multivariate mixture regression models can be used to investigate the relationships between two or more response variables and a set of predictor variables by taking into consideration unobserved population heterogeneity. It is common to take multivariate normal distributions as mixing components, but this mixing model is sensitive to heavy-tailed errors and outliers. Although normal mixture models can approximate any distribution in principle, the number of components needed to account for heavy-tailed distributions can be very large. Mixture regression models based on the multivariate t distributions can be considered as a robust alternative approach. Missing data are inevitable in many situations and parameter estimates could be biased if the missing values are not handled properly. In this paper, we propose a multivariate t mixture regression model with missing information to model heterogeneity in regression function in the presence of outliers and missing values. Along with the robust parameter estimation, our proposed method can be used for (i) visualization of the partial correlation between response variables across latent classes and heterogeneous regressions, and (ii) outlier detection and robust clustering even under the presence of missing values. We also propose a multivariate t mixture regression model using MM-estimation with missing information that is robust to high-leverage outliers. The proposed methodologies are illustrated through simulation studies and real data analysis.     

Variable selection in heteroscedastic single-index quantile regression

We propose a new algorithm for simultaneous variable selection and parameter estimation for the single-index quantile regression (SIQR) model . The proposed algorithm, which is non iterative , consists of two steps. Step 1 performs an initial variable selection method. Step 2 uses the results of Step 1 to obtain better estimation of the conditional quantiles and , using them, to perform simultaneous variable selection and estimation of the parametric component of the SIQR model. It is shown that the initial variable selection method consistently estimates the relevant variables , and the estimated parametric component derived in Step 2 satisfies the oracle property.     

Model selection for logistic regression via association rules analysis

Interaction is very common in reality, but has received little attention in logistic regression literature. This is especially true for higher-order interactions. In conventional logistic regression, interactions are typically ignored. We propose a model selection procedure by implementing an association rules analysis. We do this by (1) exploring the combinations of input variables which have significant impacts to response (via association rules analysis); (2) selecting the potential (low- and high-order) interactions; (3) converting these potential interactions into new dummy variables; and (4) performing variable selections among all the input variables and the newly created dummy variables (interactions) to build up the optimal logistic regression model. Our model selection procedure establishes the optimal combination of main effects and potential interactions. The comparisons are made through thorough simulations. It is shown that the proposed method outperforms the existing methods in all cases. A real-life example is discussed in detail to demonstrate the proposed method.